HEADER HYDROLASE 05-SEP-13 4MKI TITLE COBALT TRANSPORTER ATP-BINDING SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENERGY-COUPLING FACTOR TRANSPORTER ATP-BINDING PROTEIN COMPND 3 ECFA2; COMPND 4 CHAIN: B, A; COMPND 5 SYNONYM: ECF TRANSPORTER A COMPONENT ECFA2; COMPND 6 EC: 3.6.3.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 3 ORGANISM_TAXID: 273068; SOURCE 4 STRAIN: MB4; SOURCE 5 GENE: ECFA2, CBIO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOTIDE-BINDING DOMAIN, ECF TYPE COBALT TRANSPORTER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YU,L.ZHANG,C.L.CHAI,D.HEYMANN REVDAT 3 20-MAR-24 4MKI 1 REMARK SEQADV REVDAT 2 11-JUN-14 4MKI 1 AUTHOR REVDAT 1 30-OCT-13 4MKI 0 JRNL AUTH C.L.CHAI,Y.YU,W.ZHUO,H.ZHAO,X.LI,N.WANG,J.CHAI,M.YANG JRNL TITL STRUCTURAL BASIS FOR A HOMODIMERIC ATPASE SUBUNIT OF AN ECF JRNL TITL 2 TRANSPORTER JRNL REF PROTEIN CELL V. 4 793 2013 JRNL REFN ISSN 1674-800X JRNL PMID 24104393 JRNL DOI 10.1007/S13238-013-3915-Y REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 29168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1550 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2119 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4448 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -1.07000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.421 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4600 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4673 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6198 ; 1.830 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10818 ; 1.228 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 566 ; 6.456 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;37.305 ;24.599 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 879 ;17.927 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.487 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4967 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 907 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 1 282 A 1 282 16964 0.160 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4MKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30742 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PENTAERYTHRITOL ETHOXYLATE (15/4 REMARK 280 EO/OH), 0.1M SODIUM CACODYLATE TRITYDRATE, 0.05M AMMONIUM REMARK 280 SULFATE, PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.11450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.58150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.11450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.58150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 477 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 484 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 PRO B 0 REMARK 465 LYS B 284 REMARK 465 ASN B 285 REMARK 465 VAL B 286 REMARK 465 LEU B 287 REMARK 465 GLU B 288 REMARK 465 HIS B 289 REMARK 465 HIS B 290 REMARK 465 HIS B 291 REMARK 465 HIS B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 LYS A 284 REMARK 465 ASN A 285 REMARK 465 VAL A 286 REMARK 465 LEU A 287 REMARK 465 GLU A 288 REMARK 465 HIS A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 ARG A -1 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 18 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 18 OH REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2B LMT B 302 O HOH B 438 1.95 REMARK 500 O2' LMT A 303 O HOH A 438 2.03 REMARK 500 O HOH A 473 O HOH A 478 2.03 REMARK 500 NH2 ARG A 219 O4' LMT B 302 2.09 REMARK 500 O HOH A 410 O HOH A 494 2.11 REMARK 500 OG1 THR B 283 O HOH B 486 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU B 224 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 16 135.24 151.96 REMARK 500 LEU B 114 130.78 66.00 REMARK 500 GLU B 169 60.35 35.02 REMARK 500 LEU B 243 -157.46 -111.14 REMARK 500 THR A 16 134.98 147.80 REMARK 500 ASP A 70 97.08 -67.64 REMARK 500 PHE A 97 -45.48 -139.20 REMARK 500 LEU A 112 4.08 -68.40 REMARK 500 LEU A 114 129.84 72.23 REMARK 500 GLU A 169 65.77 38.05 REMARK 500 GLU A 234 49.40 -83.86 REMARK 500 LEU A 243 -159.38 -107.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET B 195 ILE B 196 147.11 REMARK 500 MET A 195 ILE A 196 146.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT A 303 DBREF 4MKI B 1 286 UNP Q8R7Y5 ECFA2_THETN 1 286 DBREF 4MKI A 1 286 UNP Q8R7Y5 ECFA2_THETN 1 286 SEQADV 4MKI MET B -3 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI GLY B -2 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI ARG B -1 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI PRO B 0 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI LEU B 287 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI GLU B 288 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS B 289 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS B 290 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS B 291 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS B 292 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS B 293 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS B 294 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI MET A -3 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI GLY A -2 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI ARG A -1 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI PRO A 0 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI LEU A 287 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI GLU A 288 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS A 289 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS A 290 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS A 291 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS A 292 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS A 293 UNP Q8R7Y5 EXPRESSION TAG SEQADV 4MKI HIS A 294 UNP Q8R7Y5 EXPRESSION TAG SEQRES 1 B 298 MET GLY ARG PRO MET PRO ILE LYS VAL GLU ASN VAL SER SEQRES 2 B 298 PHE ILE TYR ASN GLU GLY THR PRO TYR ALA THR VAL ALA SEQRES 3 B 298 LEU LYS ASP ILE ASN PHE SER ILE ASP ASP GLU GLU PHE SEQRES 4 B 298 VAL GLY ILE ILE GLY HIS THR GLY SER GLY LYS SER THR SEQRES 5 B 298 LEU ILE GLN GLN LEU ASN GLY LEU LEU LYS PRO SER LYS SEQRES 6 B 298 GLY LYS ILE TYR ILE ASN GLY ILE ASP ILE THR ASP LYS SEQRES 7 B 298 LYS VAL SER LEU LYS ASP ILE ARG LYS GLN VAL GLY LEU SEQRES 8 B 298 VAL PHE GLN TYR PRO GLU TYR GLN LEU PHE GLU GLU THR SEQRES 9 B 298 VAL PHE LYS ASP ILE ALA PHE GLY PRO SER ASN LEU GLY SEQRES 10 B 298 LEU SER GLU GLU GLU VAL LYS GLU ARG VAL TYR GLU ALA SEQRES 11 B 298 MET GLU ILE VAL GLY ILE SER LYS GLU LEU ALA ASP LYS SEQRES 12 B 298 SER PRO PHE GLU LEU SER GLY GLY GLN LYS ARG ARG VAL SEQRES 13 B 298 ALA ILE ALA GLY ILE LEU ALA MET ARG PRO LYS ILE LEU SEQRES 14 B 298 ILE LEU ASP GLU PRO THR ALA GLY LEU ASP PRO LYS GLY SEQRES 15 B 298 LYS GLN GLU ILE LEU ASN LYS ILE LYS GLU ILE HIS ASP SEQRES 16 B 298 LYS TYR LYS MET ILE THR ILE LEU VAL SER HIS ASN MET SEQRES 17 B 298 GLU ASP ILE ALA ARG ILE ALA ASP LYS ILE ILE VAL MET SEQRES 18 B 298 ASN ARG GLY LYS ILE GLU LEU ILE GLY THR PRO ARG GLU SEQRES 19 B 298 VAL PHE ARG GLU ALA GLU ARG LEU GLU LYS ILE GLY LEU SEQRES 20 B 298 SER VAL PRO GLN ILE THR SER LEU ALA ARG GLU LEU ARG SEQRES 21 B 298 LYS ARG GLY VAL PRO ILE PRO PRO ASP VAL LEU THR ILE SEQRES 22 B 298 GLU GLU ALA LYS GLU HIS ILE LEU ARG TYR LEU ARG GLY SEQRES 23 B 298 THR LYS ASN VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 298 MET GLY ARG PRO MET PRO ILE LYS VAL GLU ASN VAL SER SEQRES 2 A 298 PHE ILE TYR ASN GLU GLY THR PRO TYR ALA THR VAL ALA SEQRES 3 A 298 LEU LYS ASP ILE ASN PHE SER ILE ASP ASP GLU GLU PHE SEQRES 4 A 298 VAL GLY ILE ILE GLY HIS THR GLY SER GLY LYS SER THR SEQRES 5 A 298 LEU ILE GLN GLN LEU ASN GLY LEU LEU LYS PRO SER LYS SEQRES 6 A 298 GLY LYS ILE TYR ILE ASN GLY ILE ASP ILE THR ASP LYS SEQRES 7 A 298 LYS VAL SER LEU LYS ASP ILE ARG LYS GLN VAL GLY LEU SEQRES 8 A 298 VAL PHE GLN TYR PRO GLU TYR GLN LEU PHE GLU GLU THR SEQRES 9 A 298 VAL PHE LYS ASP ILE ALA PHE GLY PRO SER ASN LEU GLY SEQRES 10 A 298 LEU SER GLU GLU GLU VAL LYS GLU ARG VAL TYR GLU ALA SEQRES 11 A 298 MET GLU ILE VAL GLY ILE SER LYS GLU LEU ALA ASP LYS SEQRES 12 A 298 SER PRO PHE GLU LEU SER GLY GLY GLN LYS ARG ARG VAL SEQRES 13 A 298 ALA ILE ALA GLY ILE LEU ALA MET ARG PRO LYS ILE LEU SEQRES 14 A 298 ILE LEU ASP GLU PRO THR ALA GLY LEU ASP PRO LYS GLY SEQRES 15 A 298 LYS GLN GLU ILE LEU ASN LYS ILE LYS GLU ILE HIS ASP SEQRES 16 A 298 LYS TYR LYS MET ILE THR ILE LEU VAL SER HIS ASN MET SEQRES 17 A 298 GLU ASP ILE ALA ARG ILE ALA ASP LYS ILE ILE VAL MET SEQRES 18 A 298 ASN ARG GLY LYS ILE GLU LEU ILE GLY THR PRO ARG GLU SEQRES 19 A 298 VAL PHE ARG GLU ALA GLU ARG LEU GLU LYS ILE GLY LEU SEQRES 20 A 298 SER VAL PRO GLN ILE THR SER LEU ALA ARG GLU LEU ARG SEQRES 21 A 298 LYS ARG GLY VAL PRO ILE PRO PRO ASP VAL LEU THR ILE SEQRES 22 A 298 GLU GLU ALA LYS GLU HIS ILE LEU ARG TYR LEU ARG GLY SEQRES 23 A 298 THR LYS ASN VAL LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 B 301 5 HET LMT B 302 35 HET SO4 A 301 5 HET SO4 A 302 5 HET LMT A 303 35 HETNAM SO4 SULFATE ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 LMT 2(C24 H46 O11) FORMUL 8 HOH *195(H2 O) HELIX 1 1 GLY B 45 ASN B 54 1 10 HELIX 2 2 SER B 77 LYS B 83 1 7 HELIX 3 3 TYR B 91 GLN B 95 5 5 HELIX 4 4 THR B 100 LEU B 112 1 13 HELIX 5 5 SER B 115 VAL B 130 1 16 HELIX 6 6 SER B 133 ALA B 137 5 5 HELIX 7 7 SER B 140 LEU B 144 5 5 HELIX 8 8 SER B 145 ALA B 159 1 15 HELIX 9 9 ASP B 175 LYS B 194 1 20 HELIX 10 10 ASN B 203 ALA B 211 1 9 HELIX 11 11 THR B 227 ARG B 233 1 7 HELIX 12 12 GLU B 234 ILE B 241 1 8 HELIX 13 13 PRO B 246 ARG B 258 1 13 HELIX 14 14 THR B 268 THR B 283 1 16 HELIX 15 15 GLY A 45 ASN A 54 1 10 HELIX 16 16 SER A 77 LYS A 83 1 7 HELIX 17 17 TYR A 91 LEU A 96 5 6 HELIX 18 18 THR A 100 LEU A 112 1 13 HELIX 19 19 SER A 115 VAL A 130 1 16 HELIX 20 20 SER A 133 ALA A 137 5 5 HELIX 21 21 SER A 140 LEU A 144 5 5 HELIX 22 22 SER A 145 ALA A 159 1 15 HELIX 23 23 ASP A 175 LYS A 194 1 20 HELIX 24 24 ASN A 203 ALA A 211 1 9 HELIX 25 25 THR A 227 ARG A 233 1 7 HELIX 26 26 GLU A 234 ILE A 241 1 8 HELIX 27 27 PRO A 246 ARG A 258 1 13 HELIX 28 28 THR A 268 GLY A 282 1 15 SHEET 1 A 4 THR B 20 ILE B 30 0 SHEET 2 A 4 ILE B 3 TYR B 12 -1 N TYR B 12 O THR B 20 SHEET 3 A 4 LYS B 61 ILE B 66 -1 O LYS B 63 N GLU B 6 SHEET 4 A 4 ILE B 69 ASP B 70 -1 O ILE B 69 N ILE B 66 SHEET 1 B 6 VAL B 85 VAL B 88 0 SHEET 2 B 6 ILE B 164 ASP B 168 1 O ILE B 166 N VAL B 88 SHEET 3 B 6 ILE B 196 VAL B 200 1 O ILE B 198 N LEU B 167 SHEET 4 B 6 PHE B 35 GLY B 40 1 N VAL B 36 O THR B 197 SHEET 5 B 6 LYS B 213 ASN B 218 1 O ILE B 215 N GLY B 37 SHEET 6 B 6 LYS B 221 GLY B 226 -1 O GLY B 226 N ILE B 214 SHEET 1 C 4 THR A 20 ILE A 30 0 SHEET 2 C 4 ILE A 3 TYR A 12 -1 N VAL A 8 O ILE A 26 SHEET 3 C 4 LYS A 61 ILE A 66 -1 O LYS A 63 N GLU A 6 SHEET 4 C 4 ILE A 69 ASP A 70 -1 O ILE A 69 N ILE A 66 SHEET 1 D 6 VAL A 85 VAL A 88 0 SHEET 2 D 6 ILE A 164 ASP A 168 1 O ILE A 166 N VAL A 88 SHEET 3 D 6 ILE A 196 VAL A 200 1 O ILE A 198 N LEU A 167 SHEET 4 D 6 PHE A 35 GLY A 40 1 N VAL A 36 O THR A 197 SHEET 5 D 6 LYS A 213 ASN A 218 1 O ILE A 215 N GLY A 37 SHEET 6 D 6 LYS A 221 GLY A 226 -1 O GLU A 223 N VAL A 216 CISPEP 1 GLY B 15 THR B 16 0 -13.37 CISPEP 2 ARG A -1 PRO A 0 0 8.54 CISPEP 3 GLY A 15 THR A 16 0 -6.32 SITE 1 AC1 10 HIS B 41 THR B 42 GLY B 43 SER B 44 SITE 2 AC1 10 GLY B 45 LYS B 46 SER B 47 HOH B 408 SITE 3 AC1 10 HOH B 413 HOH B 487 SITE 1 AC2 13 HIS A 41 THR A 42 GLU A 116 LYS A 120 SITE 2 AC2 13 ARG A 219 SER B 145 ASP B 175 LYS B 177 SITE 3 AC2 13 GLY B 178 HOH B 418 HOH B 435 HOH B 438 SITE 4 AC2 13 HOH B 467 SITE 1 AC3 8 HIS A 41 GLY A 43 SER A 44 GLY A 45 SITE 2 AC3 8 LYS A 46 SER A 47 HOH A 403 HOH A 408 SITE 1 AC4 6 LYS A 46 GLN A 90 ASP A 168 GLU A 169 SITE 2 AC4 6 HIS A 202 HOH A 408 SITE 1 AC5 11 ARG A 151 ILE A 154 ASP A 175 LYS A 177 SITE 2 AC5 11 ILE A 182 ILE A 189 HOH A 438 HIS B 41 SITE 3 AC5 11 THR B 42 ARG B 219 HOH B 454 CRYST1 110.229 115.163 54.416 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018377 0.00000