HEADER TRANSFERASE 05-SEP-13 4MKP TITLE CRYSTAL STRUCTURE OF HUMAN CGAS APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 161-522; COMPND 5 SYNONYM: CGAMP SYNTHASE, CGAS, H-CGAS, MAB-21 DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PE-SUMO KEYWDS NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.KATO,R.ISHII,R.ISHITANI,O.NUREKI REVDAT 2 08-NOV-23 4MKP 1 REMARK SEQADV REVDAT 1 30-OCT-13 4MKP 0 JRNL AUTH K.KATO,R.ISHII,E.GOTO,R.ISHITANI,F.TOKUNAGA,O.NUREKI JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF DNA-SENSING AND IMMUNE JRNL TITL 2 ACTIVATION BY HUMAN CGAS JRNL REF PLOS ONE V. 8 76983 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24116191 JRNL DOI 10.1371/JOURNAL.PONE.0076983 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 25996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8885 - 4.0615 0.99 2968 144 0.2120 0.2427 REMARK 3 2 4.0615 - 3.2241 0.99 2808 160 0.1913 0.2435 REMARK 3 3 3.2241 - 2.8166 0.98 2775 151 0.2055 0.2696 REMARK 3 4 2.8166 - 2.5591 0.98 2753 132 0.2035 0.2517 REMARK 3 5 2.5591 - 2.3757 0.97 2680 173 0.1961 0.2604 REMARK 3 6 2.3757 - 2.2357 0.98 2705 154 0.1895 0.2484 REMARK 3 7 2.2357 - 2.1237 0.97 2689 138 0.2052 0.2631 REMARK 3 8 2.1237 - 2.0313 0.97 2691 136 0.2186 0.2591 REMARK 3 9 2.0313 - 1.9531 0.95 2616 123 0.2442 0.2950 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 54.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60490 REMARK 3 B22 (A**2) : -5.39650 REMARK 3 B33 (A**2) : 6.00150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2605 REMARK 3 ANGLE : 1.246 3519 REMARK 3 CHIRALITY : 0.086 400 REMARK 3 PLANARITY : 0.004 441 REMARK 3 DIHEDRAL : 17.134 953 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 162:197) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4997 26.2593 16.2489 REMARK 3 T TENSOR REMARK 3 T11: 0.4697 T22: 0.3045 REMARK 3 T33: 0.3346 T12: 0.0170 REMARK 3 T13: 0.0635 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.9036 L22: 2.7257 REMARK 3 L33: 8.8226 L12: -0.3218 REMARK 3 L13: 0.3651 L23: 2.4341 REMARK 3 S TENSOR REMARK 3 S11: 0.1777 S12: 0.3241 S13: 0.3742 REMARK 3 S21: -0.4341 S22: -0.1521 S23: 0.0981 REMARK 3 S31: -0.7472 S32: -0.3951 S33: -0.1140 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 198:272) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5176 9.6215 0.2165 REMARK 3 T TENSOR REMARK 3 T11: 0.4148 T22: 0.4670 REMARK 3 T33: 0.2230 T12: 0.1028 REMARK 3 T13: 0.0819 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 3.7394 L22: 3.4690 REMARK 3 L33: 3.8940 L12: -0.3226 REMARK 3 L13: 0.2828 L23: -0.6667 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.3863 S13: -0.2090 REMARK 3 S21: -0.6189 S22: -0.0610 S23: -0.0991 REMARK 3 S31: -0.1450 S32: 0.1621 S33: 0.1576 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 273:388) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7526 8.9656 7.2602 REMARK 3 T TENSOR REMARK 3 T11: 0.3290 T22: 0.3509 REMARK 3 T33: 0.2418 T12: 0.0333 REMARK 3 T13: 0.0784 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.4736 L22: 2.1660 REMARK 3 L33: 2.5340 L12: -0.0178 REMARK 3 L13: -0.4621 L23: -0.3649 REMARK 3 S TENSOR REMARK 3 S11: 0.1667 S12: 0.5095 S13: 0.0825 REMARK 3 S21: -0.5885 S22: -0.0824 S23: -0.3235 REMARK 3 S31: -0.0965 S32: 0.3440 S33: -0.0181 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 389:521) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2988 13.9010 27.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.2587 REMARK 3 T33: 0.2013 T12: -0.0234 REMARK 3 T13: -0.0435 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.6631 L22: 2.6931 REMARK 3 L33: 1.9817 L12: 0.5683 REMARK 3 L13: -0.3783 L23: 0.3807 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: -0.3628 S13: 0.0885 REMARK 3 S21: 0.1267 S22: -0.0687 S23: -0.4642 REMARK 3 S31: -0.1400 S32: 0.5811 S33: -0.0556 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4K96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NH4NO3, NACL, CYMAL-7, PH REMARK 280 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.77300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.15550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.77300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.15550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1164 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 159 REMARK 465 SER A 160 REMARK 465 GLY A 161 REMARK 465 VAL A 218 REMARK 465 LYS A 219 REMARK 465 ILE A 220 REMARK 465 SER A 221 REMARK 465 ALA A 222 REMARK 465 ARG A 255 REMARK 465 ASN A 256 REMARK 465 PRO A 257 REMARK 465 LYS A 258 REMARK 465 GLU A 259 REMARK 465 ASN A 260 REMARK 465 ASN A 289 REMARK 465 ASP A 290 REMARK 465 ILE A 291 REMARK 465 LYS A 292 REMARK 465 ASP A 293 REMARK 465 THR A 294 REMARK 465 ASP A 295 REMARK 465 VAL A 296 REMARK 465 ILE A 297 REMARK 465 MET A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 ARG A 302 REMARK 465 GLY A 303 REMARK 465 GLY A 304 REMARK 465 SER A 305 REMARK 465 HIS A 363 REMARK 465 ALA A 364 REMARK 465 LYS A 365 REMARK 465 GLU A 366 REMARK 465 GLY A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 PHE A 370 REMARK 465 ASP A 426 REMARK 465 LYS A 427 REMARK 465 PHE A 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 163 OG REMARK 470 ILE A 179 CG1 CG2 CD1 REMARK 470 SER A 180 OG REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 210 CG OD1 ND2 REMARK 470 TYR A 215 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 SER A 263 OG REMARK 470 GLN A 264 CG CD OE1 NE2 REMARK 470 PHE A 265 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 ILE A 270 CD1 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ARG A 281 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ILE A 288 CG1 CG2 CD1 REMARK 470 THR A 309 OG1 CG2 REMARK 470 LEU A 310 CG CD1 CD2 REMARK 470 GLU A 314 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 SER A 317 OG REMARK 470 GLN A 335 CD OE1 NE2 REMARK 470 LYS A 350 CD CE NZ REMARK 470 GLN A 371 CG CD OE1 NE2 REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 LYS A 403 CD CE NZ REMARK 470 GLU A 422 OE1 OE2 REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 ASP A 431 CG OD1 OD2 REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 ARG A 457 CZ NH1 NH2 REMARK 470 ASN A 494 CG OD1 ND2 REMARK 470 LYS A 506 CG CD CE NZ REMARK 470 GLU A 521 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 206 150.12 -48.61 REMARK 500 ASN A 210 91.47 65.11 REMARK 500 THR A 211 -159.79 -149.75 REMARK 500 ARG A 236 103.35 -25.08 REMARK 500 SER A 243 -136.36 50.06 REMARK 500 ARG A 246 -32.12 71.98 REMARK 500 VAL A 308 -74.58 -72.86 REMARK 500 GLU A 314 107.26 -50.25 REMARK 500 TRP A 343 -67.42 -104.36 REMARK 500 SER A 345 153.94 99.30 REMARK 500 PRO A 361 91.75 -60.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 312 SER A 313 147.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 116.0 REMARK 620 3 CYS A 397 SG 103.9 131.0 REMARK 620 4 CYS A 404 SG 93.9 100.1 104.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 DBREF 4MKP A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQADV 4MKP GLY A 159 UNP Q8N884 EXPRESSION TAG SEQADV 4MKP SER A 160 UNP Q8N884 EXPRESSION TAG SEQRES 1 A 364 GLY SER GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS SEQRES 2 A 364 LEU LYS LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY SEQRES 3 A 364 MET VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU SEQRES 4 A 364 LYS CYS ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN SEQRES 5 A 364 THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO SEQRES 6 A 364 ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG SEQRES 7 A 364 ILE GLN LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR SEQRES 8 A 364 PHE VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SEQRES 9 A 364 SER GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS SEQRES 10 A 364 MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE SEQRES 11 A 364 ASN ASP ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS SEQRES 12 A 364 ARG GLY GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU SEQRES 13 A 364 LYS ILE SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SEQRES 14 A 364 SER SER TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE SEQRES 15 A 364 GLN ASN TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG SEQRES 16 A 364 LEU LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU SEQRES 17 A 364 GLY ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SEQRES 18 A 364 SER HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SEQRES 19 A 364 SER LYS THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS SEQRES 20 A 364 ARG LYS ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU SEQRES 21 A 364 GLN LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP SEQRES 22 A 364 LYS PHE SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS SEQRES 23 A 364 VAL CYS THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG SEQRES 24 A 364 LYS ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR SEQRES 25 A 364 PHE LEU GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR SEQRES 26 A 364 PHE ILE PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE SEQRES 27 A 364 ASP LYS ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A1000 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *114(H2 O) HELIX 1 1 ALA A 162 LEU A 174 1 13 HELIX 2 2 SER A 175 LYS A 198 1 24 HELIX 3 3 THR A 211 HIS A 217 1 7 HELIX 4 4 LEU A 262 GLN A 264 5 3 HELIX 5 5 SER A 272 ILE A 288 1 17 HELIX 6 6 PRO A 331 GLN A 335 5 5 HELIX 7 7 SER A 345 LEU A 354 1 10 HELIX 8 8 PHE A 379 ASN A 389 1 11 HELIX 9 9 ASN A 399 LYS A 403 5 5 HELIX 10 10 CYS A 405 ARG A 423 1 19 HELIX 11 11 SER A 434 ASN A 449 1 16 HELIX 12 12 GLN A 451 LYS A 458 5 8 HELIX 13 13 ASP A 459 GLU A 478 1 20 HELIX 14 14 ASP A 497 ASN A 514 1 18 HELIX 15 15 GLU A 515 ASP A 520 5 6 SHEET 1 A 7 GLY A 207 LEU A 208 0 SHEET 2 A 7 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 A 7 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 A 7 PHE A 357 VAL A 360 -1 O PHE A 357 N SER A 326 SHEET 5 A 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360 SHEET 6 A 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375 SHEET 7 A 7 ILE A 237 GLU A 241 -1 N GLN A 238 O LYS A 252 SHEET 1 B 4 GLY A 207 LEU A 208 0 SHEET 2 B 4 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 B 4 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 B 4 THR A 309 SER A 313 -1 N THR A 309 O ILE A 320 SHEET 1 C 2 LEU A 266 GLU A 267 0 SHEET 2 C 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 LINK NE2 HIS A 390 ZN ZN A1000 1555 1555 2.20 LINK SG CYS A 396 ZN ZN A1000 1555 1555 2.33 LINK SG CYS A 397 ZN ZN A1000 1555 1555 2.38 LINK SG CYS A 404 ZN ZN A1000 1555 1555 2.48 CISPEP 1 PRO A 306 ALA A 307 0 -3.90 SITE 1 AC1 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 CRYST1 123.546 48.311 59.565 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016788 0.00000