HEADER ISOMERASE 06-SEP-13 4ML6 TITLE DISULFIDE ISOMERASE FROM MULTIDRUG RESISTANCE INCA/C CONJUGATIVE TITLE 2 PLASMID IN REDUCED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DSBP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-235; COMPND 5 SYNONYM: DSBP THIOL:DISULFIDE INTERCHANGE PROTEIN, PLASMID OR COMPND 6 INTEGRATIVE AND CONJUGATIVE ELEMENTS ENCODED DISULFIDE ISOMERASE; COMPND 7 EC: 5.3.4.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: DSBC, DSBP, PNDM10469_89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS KEYWDS DSBC, DSBG, FOLDING AND ASSEMBLY, BACTERIAL CONJUGATION, HORIZONTAL KEYWDS 2 GENE TRANSFER, DOMAIN SWAPPING, THIOREDOXIN FOLD, BACTERIAL KEYWDS 3 PERIPLASMIC SPACE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PREMKUMAR,F.KURTH,S.NEYER,J.L.MARTIN REVDAT 4 15-NOV-17 4ML6 1 REMARK REVDAT 3 19-FEB-14 4ML6 1 JRNL REVDAT 2 15-JAN-14 4ML6 1 JRNL REVDAT 1 11-DEC-13 4ML6 0 JRNL AUTH L.PREMKUMAR,F.KURTH,S.NEYER,M.A.SCHEMBRI,J.L.MARTIN JRNL TITL THE MULTIDRUG RESISTANCE INCA/C TRANSFERABLE PLASMID ENCODES JRNL TITL 2 A NOVEL DOMAIN-SWAPPED DIMERIC PROTEIN-DISULFIDE ISOMERASE. JRNL REF J.BIOL.CHEM. V. 289 2563 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24311786 JRNL DOI 10.1074/JBC.M113.516898 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 41827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7837 - 5.6640 0.96 2638 140 0.1760 0.1898 REMARK 3 2 5.6640 - 4.4990 0.98 2621 148 0.1533 0.1910 REMARK 3 3 4.4990 - 3.9313 0.98 2636 140 0.1539 0.1988 REMARK 3 4 3.9313 - 3.5723 0.98 2617 168 0.1742 0.2424 REMARK 3 5 3.5723 - 3.3165 0.99 2642 138 0.1951 0.2633 REMARK 3 6 3.3165 - 3.1211 0.99 2644 158 0.2071 0.2748 REMARK 3 7 3.1211 - 2.9649 0.99 2655 134 0.2069 0.2729 REMARK 3 8 2.9649 - 2.8359 0.99 2623 154 0.2069 0.2831 REMARK 3 9 2.8359 - 2.7268 0.99 2638 141 0.2186 0.2909 REMARK 3 10 2.7268 - 2.6327 0.99 2639 136 0.2247 0.3080 REMARK 3 11 2.6327 - 2.5504 1.00 2682 143 0.2325 0.3190 REMARK 3 12 2.5504 - 2.4775 0.99 2623 143 0.2338 0.3171 REMARK 3 13 2.4775 - 2.4123 0.99 2682 151 0.2493 0.3072 REMARK 3 14 2.4123 - 2.3535 1.00 2635 130 0.2523 0.3255 REMARK 3 15 2.3535 - 2.3000 1.00 2697 131 0.2613 0.3181 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6364 REMARK 3 ANGLE : 1.266 8613 REMARK 3 CHIRALITY : 0.058 984 REMARK 3 PLANARITY : 0.008 1118 REMARK 3 DIHEDRAL : 11.407 2387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 11.9934 -5.2134 22.2115 REMARK 3 T TENSOR REMARK 3 T11: 0.3536 T22: 0.3607 REMARK 3 T33: 0.4869 T12: -0.0649 REMARK 3 T13: -0.0257 T23: -0.1485 REMARK 3 L TENSOR REMARK 3 L11: 2.3289 L22: 2.2008 REMARK 3 L33: 1.1741 L12: 0.9675 REMARK 3 L13: 0.0525 L23: 0.8538 REMARK 3 S TENSOR REMARK 3 S11: 0.3599 S12: -0.3269 S13: 0.4560 REMARK 3 S21: 0.4032 S22: 0.0296 S23: -0.4982 REMARK 3 S31: -0.1415 S32: 0.1722 S33: 0.1011 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 14.1285 -28.8209 24.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.3639 REMARK 3 T33: 0.3362 T12: 0.0555 REMARK 3 T13: -0.1838 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 2.3352 L22: 2.8667 REMARK 3 L33: 2.1586 L12: 0.8198 REMARK 3 L13: -1.2223 L23: -0.5332 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: -0.3945 S13: -0.0022 REMARK 3 S21: 0.3842 S22: 0.1376 S23: -0.3043 REMARK 3 S31: 0.1461 S32: 0.1379 S33: 0.0115 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 10.0858 -33.1115 -4.3918 REMARK 3 T TENSOR REMARK 3 T11: 0.2994 T22: 0.2989 REMARK 3 T33: 0.3042 T12: -0.0111 REMARK 3 T13: 0.0217 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.8955 L22: 2.3854 REMARK 3 L33: 1.6135 L12: -1.2678 REMARK 3 L13: -1.1393 L23: 1.3910 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: 0.1445 S13: -0.0486 REMARK 3 S21: -0.2909 S22: 0.0011 S23: -0.4732 REMARK 3 S31: 0.0713 S32: -0.0247 S33: 0.0060 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): 13.9768 -6.9574 -7.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.6896 T22: 0.4120 REMARK 3 T33: 0.6369 T12: 0.0877 REMARK 3 T13: 0.3146 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.3070 L22: 1.8844 REMARK 3 L33: 2.3159 L12: -0.9329 REMARK 3 L13: 0.2308 L23: -0.3652 REMARK 3 S TENSOR REMARK 3 S11: 0.3880 S12: 0.2227 S13: 0.4455 REMARK 3 S21: -0.7162 S22: -0.0376 S23: -0.5268 REMARK 3 S31: -0.5546 S32: -0.0899 S33: 0.0107 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ML6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG8000, 20% V/V ETHYLENE REMARK 280 GLYCOL, 0.1 M MOPS/HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.29900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 214 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ILE B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 ARG B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 213 REMARK 465 GLU B 214 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 LEU C 4 REMARK 465 GLU C 5 REMARK 465 ILE C 6 REMARK 465 THR C 7 REMARK 465 ASP C 8 REMARK 465 PRO C 9 REMARK 465 ARG C 10 REMARK 465 ALA C 11 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 SER D 1 REMARK 465 SER D 2 REMARK 465 LYS D 3 REMARK 465 LEU D 4 REMARK 465 GLU D 5 REMARK 465 ILE D 6 REMARK 465 THR D 7 REMARK 465 ASP D 8 REMARK 465 PRO D 9 REMARK 465 ARG D 10 REMARK 465 ALA D 11 REMARK 465 ALA D 213 REMARK 465 GLU D 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CD CE NZ REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 139 CD CE NZ REMARK 470 LYS A 145 CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 LYS B 55 CD CE NZ REMARK 470 LYS B 145 CD CE NZ REMARK 470 HIS B 149 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 13 CD CE NZ REMARK 470 GLU C 214 CG CD OE1 OE2 REMARK 470 LYS D 13 CE NZ REMARK 470 LYS D 56 CG CD CE NZ REMARK 470 LYS D 74 CG CD CE NZ REMARK 470 LYS D 145 CD CE NZ REMARK 470 HIS D 149 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG C 197 O TRP C 209 1.52 REMARK 500 HH22 ARG A 197 O TRP A 209 1.55 REMARK 500 OE2 GLU C 133 HH21 ARG C 136 1.59 REMARK 500 O ILE D 185 O HOH D 332 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN D 48 O HOH A 401 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 197 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG C 197 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 161 50.50 -108.20 REMARK 500 THR A 167 99.71 60.92 REMARK 500 SER A 212 -169.84 121.77 REMARK 500 SER B 161 47.22 -103.79 REMARK 500 THR B 167 50.40 72.60 REMARK 500 SER C 212 -179.46 115.06 REMARK 500 ASP D 16 149.19 -170.33 REMARK 500 SER D 161 52.97 -108.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ML1 RELATED DB: PDB REMARK 900 DISULFIDE ISOMERASE IN ORTHORHOMBIC CRYSTAL FORM (OXIDIZED STATE) REMARK 900 RELATED ID: 4MLY RELATED DB: PDB REMARK 900 DISULFIDE ISOMERASE DBREF 4ML6 A 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 DBREF 4ML6 B 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 DBREF 4ML6 C 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 DBREF 4ML6 D 1 214 UNP A6GV51 A6GV51_KLEPN 22 235 SEQADV 4ML6 SER A -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ASN A -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ALA A 0 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 SER B -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ASN B -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ALA B 0 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 SER C -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ASN C -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ALA C 0 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 SER D -2 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ASN D -1 UNP A6GV51 EXPRESSION TAG SEQADV 4ML6 ALA D 0 UNP A6GV51 EXPRESSION TAG SEQRES 1 A 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 A 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 A 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 A 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 A 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 A 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 A 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 A 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 A 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 A 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 A 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 A 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 A 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 A 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 A 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 A 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 A 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 B 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 B 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 B 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 B 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 B 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 B 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 B 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 B 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 B 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 B 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 B 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 B 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 B 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 B 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 B 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 B 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 B 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 C 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 C 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 C 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 C 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 C 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 C 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 C 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 C 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 C 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 C 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 C 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 C 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 C 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 C 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 C 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 C 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 C 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 D 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 D 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 D 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 D 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 D 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 D 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 D 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 D 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 D 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 D 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 D 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 D 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 D 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 D 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 D 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 D 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 D 217 LEU LYS SER TRP LEU GLU SER ALA GLU FORMUL 5 HOH *326(H2 O) HELIX 1 1 THR A 60 ARG A 70 1 11 HELIX 2 2 ASP A 79 LEU A 83 5 5 HELIX 3 3 CYS A 103 SER A 115 1 13 HELIX 4 4 GLY A 131 CYS A 143 1 13 HELIX 5 5 HIS A 149 ASN A 157 1 9 HELIX 6 6 THR A 158 LEU A 162 5 5 HELIX 7 7 ASP A 174 GLY A 184 1 11 HELIX 8 8 ASN A 205 GLU A 211 1 7 HELIX 9 9 THR B 60 ARG B 70 1 11 HELIX 10 10 ASP B 79 LEU B 83 5 5 HELIX 11 11 CYS B 103 LYS B 114 1 12 HELIX 12 12 SER B 115 VAL B 117 5 3 HELIX 13 13 GLY B 131 CYS B 143 1 13 HELIX 14 14 HIS B 149 ASN B 157 1 9 HELIX 15 15 THR B 158 LEU B 162 5 5 HELIX 16 16 ASP B 174 ILE B 183 1 10 HELIX 17 17 ASN B 205 GLU B 211 1 7 HELIX 18 18 THR C 60 ARG C 70 1 11 HELIX 19 19 PHE C 73 GLY C 77 5 5 HELIX 20 20 ASP C 79 LEU C 83 5 5 HELIX 21 21 CYS C 103 LYS C 114 1 12 HELIX 22 22 SER C 115 VAL C 117 5 3 HELIX 23 23 GLY C 131 CYS C 143 1 13 HELIX 24 24 HIS C 149 ASN C 156 1 8 HELIX 25 25 THR C 158 LEU C 162 5 5 HELIX 26 26 PRO C 170 GLY C 184 1 15 HELIX 27 27 ASN C 205 GLU C 211 1 7 HELIX 28 28 THR D 60 ARG D 70 1 11 HELIX 29 29 ASP D 79 LEU D 83 5 5 HELIX 30 30 CYS D 103 LYS D 114 1 12 HELIX 31 31 SER D 115 VAL D 117 5 3 HELIX 32 32 GLY D 131 CYS D 143 1 13 HELIX 33 33 HIS D 149 ASN D 157 1 9 HELIX 34 34 THR D 158 LEU D 162 5 5 HELIX 35 35 PRO D 170 GLY D 184 1 15 HELIX 36 36 ASN D 205 SER D 212 1 8 SHEET 1 A 8 ILE A 14 GLU A 19 0 SHEET 2 A 8 VAL C 25 SER C 30 -1 O ALA C 27 N VAL A 18 SHEET 3 A 8 GLN C 33 SER C 38 -1 O LEU C 37 N ARG C 26 SHEET 4 A 8 PHE C 43 ASP C 51 -1 O ILE C 45 N PHE C 36 SHEET 5 A 8 PHE A 43 ASP A 51 -1 N TYR A 50 O VAL C 44 SHEET 6 A 8 GLN A 33 SER A 38 -1 N PHE A 36 O ILE A 45 SHEET 7 A 8 VAL A 25 SER A 30 -1 N SER A 30 O GLN A 33 SHEET 8 A 8 ILE C 14 GLU C 19 -1 O VAL C 18 N ALA A 27 SHEET 1 B 4 LYS A 56 LEU A 58 0 SHEET 2 B 4 PHE A 43 ASP A 51 -1 N ILE A 49 O LEU A 58 SHEET 3 B 4 PHE C 43 ASP C 51 -1 O VAL C 44 N TYR A 50 SHEET 4 B 4 LYS C 56 LEU C 58 -1 O LYS C 56 N ASP C 51 SHEET 1 C 5 THR A 85 GLY A 89 0 SHEET 2 C 5 TYR A 120 VAL A 126 -1 O PHE A 122 N MET A 88 SHEET 3 C 5 LYS A 93 VAL A 99 1 N VAL A 95 O LYS A 123 SHEET 4 C 5 PHE A 190 VAL A 192 -1 O VAL A 192 N VAL A 96 SHEET 5 C 5 VAL A 198 LYS A 200 -1 O SER A 199 N VAL A 191 SHEET 1 D 8 ILE B 14 GLU B 19 0 SHEET 2 D 8 VAL D 25 SER D 30 -1 O ALA D 27 N VAL B 18 SHEET 3 D 8 GLN D 33 SER D 38 -1 O MET D 35 N VAL D 28 SHEET 4 D 8 PHE D 43 ASP D 51 -1 O ILE D 45 N PHE D 36 SHEET 5 D 8 PHE B 43 ASP B 51 -1 N SER B 46 O GLN D 48 SHEET 6 D 8 GLN B 33 SER B 38 -1 N PHE B 36 O ILE B 45 SHEET 7 D 8 VAL B 25 SER B 30 -1 N VAL B 28 O MET B 35 SHEET 8 D 8 ILE D 14 GLU D 19 -1 O VAL D 18 N ALA B 27 SHEET 1 E 4 LYS B 56 LEU B 58 0 SHEET 2 E 4 PHE B 43 ASP B 51 -1 N ASP B 51 O LYS B 56 SHEET 3 E 4 PHE D 43 ASP D 51 -1 O GLN D 48 N SER B 46 SHEET 4 E 4 LYS D 56 LEU D 58 -1 O LYS D 56 N ASP D 51 SHEET 1 F 5 THR B 85 GLY B 89 0 SHEET 2 F 5 TYR B 120 VAL B 126 -1 O PHE B 122 N MET B 88 SHEET 3 F 5 LYS B 93 VAL B 99 1 N VAL B 95 O LYS B 123 SHEET 4 F 5 PHE B 190 VAL B 192 -1 O VAL B 192 N VAL B 96 SHEET 5 F 5 VAL B 198 LYS B 200 -1 O SER B 199 N VAL B 191 SHEET 1 G 5 THR C 85 GLY C 89 0 SHEET 2 G 5 TYR C 120 VAL C 126 -1 O PHE C 122 N MET C 88 SHEET 3 G 5 LYS C 93 VAL C 99 1 N VAL C 95 O LYS C 123 SHEET 4 G 5 PHE C 190 VAL C 192 -1 O VAL C 192 N VAL C 96 SHEET 5 G 5 VAL C 198 LYS C 200 -1 O SER C 199 N VAL C 191 SHEET 1 H 5 THR D 85 GLY D 89 0 SHEET 2 H 5 TYR D 120 VAL D 126 -1 O PHE D 122 N MET D 88 SHEET 3 H 5 LYS D 93 VAL D 99 1 N VAL D 95 O LYS D 123 SHEET 4 H 5 PHE D 190 VAL D 192 -1 O VAL D 192 N VAL D 96 SHEET 5 H 5 VAL D 198 LYS D 200 -1 O SER D 199 N VAL D 191 SSBOND 1 CYS A 103 CYS A 106 1555 1555 2.04 SSBOND 2 CYS A 143 CYS A 168 1555 1555 2.05 SSBOND 3 CYS B 103 CYS B 106 1555 1555 2.02 SSBOND 4 CYS B 143 CYS B 168 1555 1555 2.05 SSBOND 5 CYS C 103 CYS C 106 1555 1555 2.02 SSBOND 6 CYS C 143 CYS C 168 1555 1555 2.05 SSBOND 7 CYS D 103 CYS D 106 1555 1555 2.03 SSBOND 8 CYS D 143 CYS D 168 1555 1555 2.06 CISPEP 1 VAL A 188 PRO A 189 0 -3.71 CISPEP 2 VAL B 188 PRO B 189 0 -3.98 CISPEP 3 VAL C 188 PRO C 189 0 -2.46 CISPEP 4 SER C 212 ALA C 213 0 -9.14 CISPEP 5 ALA C 213 GLU C 214 0 -4.80 CISPEP 6 VAL D 188 PRO D 189 0 -2.12 CRYST1 54.690 110.598 80.744 90.00 96.83 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018285 0.000000 0.002190 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012473 0.00000