HEADER ISOMERASE 06-SEP-13 4MLY TITLE DISULFIDE ISOMERASE FROM MULTIDRUG RESISTANCE INCA/C RELATED TITLE 2 INTEGRATIVE AND CONJUGATIVE ELEMENTS IN OXIDIZED STATE (P21 SPACE TITLE 3 GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DSBP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-235; COMPND 5 SYNONYM: DSBP THIOL:DISULFIDE INTERCHANGE PROTEIN, PLASMID OR COMPND 6 INTEGRATIVE AND CONJUGATIVE ELEMENTS ENCODED DISULFIDE ISOMERASE; COMPND 7 EC: 5.3.4.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 584; SOURCE 4 GENE: DSBC, DSBP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS KEYWDS DSBC, DSBG, FOLDING AND ASSEMBLY, BACTERIAL CONJUGATION, HORIZONTAL KEYWDS 2 GENE TRANSFER, DOMAIN SWAPPING, THIOREDOXIN FOLD, BACTERIAL KEYWDS 3 PERIPLASMIC SPACE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PREMKUMAR,F.KURTH,S.NEYER,J.L.MARTIN REVDAT 4 15-NOV-17 4MLY 1 REMARK REVDAT 3 19-FEB-14 4MLY 1 JRNL REVDAT 2 15-JAN-14 4MLY 1 JRNL REVDAT 1 11-DEC-13 4MLY 0 JRNL AUTH L.PREMKUMAR,F.KURTH,S.NEYER,M.A.SCHEMBRI,J.L.MARTIN JRNL TITL THE MULTIDRUG RESISTANCE INCA/C TRANSFERABLE PLASMID ENCODES JRNL TITL 2 A NOVEL DOMAIN-SWAPPED DIMERIC PROTEIN-DISULFIDE ISOMERASE. JRNL REF J.BIOL.CHEM. V. 289 2563 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24311786 JRNL DOI 10.1074/JBC.M113.516898 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0850 - 5.5544 1.00 2660 137 0.1945 0.2233 REMARK 3 2 5.5544 - 4.4115 1.00 2625 152 0.1527 0.1910 REMARK 3 3 4.4115 - 3.8546 1.00 2645 132 0.1516 0.1998 REMARK 3 4 3.8546 - 3.5025 1.00 2601 153 0.1723 0.2323 REMARK 3 5 3.5025 - 3.2517 1.00 2608 146 0.1828 0.2283 REMARK 3 6 3.2517 - 3.0601 1.00 2611 146 0.1969 0.2302 REMARK 3 7 3.0601 - 2.9069 1.00 2614 137 0.2035 0.2486 REMARK 3 8 2.9069 - 2.7804 1.00 2618 141 0.1978 0.2653 REMARK 3 9 2.7804 - 2.6734 1.00 2611 144 0.2061 0.2565 REMARK 3 10 2.6734 - 2.5812 1.00 2605 141 0.2050 0.2604 REMARK 3 11 2.5812 - 2.5005 1.00 2602 126 0.2089 0.2939 REMARK 3 12 2.5005 - 2.4291 1.00 2626 135 0.2014 0.2820 REMARK 3 13 2.4291 - 2.3651 1.00 2593 148 0.2146 0.2642 REMARK 3 14 2.3651 - 2.3074 1.00 2613 126 0.2177 0.2846 REMARK 3 15 2.3074 - 2.2550 0.99 2551 145 0.2428 0.3020 REMARK 3 16 2.2550 - 2.2070 0.92 2406 118 0.2733 0.3396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 6373 REMARK 3 ANGLE : 1.512 8604 REMARK 3 CHIRALITY : 0.061 975 REMARK 3 PLANARITY : 0.009 1114 REMARK 3 DIHEDRAL : 12.519 2398 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -9.1335 4.5599 -37.8223 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.2454 REMARK 3 T33: 0.2741 T12: -0.0697 REMARK 3 T13: -0.0533 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.4571 L22: 3.5929 REMARK 3 L33: 1.2179 L12: -1.9582 REMARK 3 L13: 0.2666 L23: -1.7670 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: 0.3100 S13: -0.1825 REMARK 3 S21: -0.2711 S22: 0.0500 S23: 0.4195 REMARK 3 S31: 0.0478 S32: -0.1799 S33: -0.1332 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -12.8706 -19.5876 -44.4515 REMARK 3 T TENSOR REMARK 3 T11: 0.3422 T22: 0.5117 REMARK 3 T33: 0.2743 T12: -0.0349 REMARK 3 T13: -0.0047 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 1.5216 L22: 1.4016 REMARK 3 L33: 3.8457 L12: 0.1390 REMARK 3 L13: -1.7405 L23: 0.1378 REMARK 3 S TENSOR REMARK 3 S11: -0.1846 S12: 0.1824 S13: -0.1397 REMARK 3 S21: -0.3610 S22: -0.0704 S23: -0.1018 REMARK 3 S31: 0.4523 S32: 0.1520 S33: 0.2446 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): -10.4786 -2.2864 -10.0123 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.2635 REMARK 3 T33: 0.2665 T12: 0.0093 REMARK 3 T13: 0.0440 T23: -0.1047 REMARK 3 L TENSOR REMARK 3 L11: 3.3483 L22: 0.8932 REMARK 3 L33: 1.8652 L12: 0.4441 REMARK 3 L13: 0.6894 L23: -0.0946 REMARK 3 S TENSOR REMARK 3 S11: -0.0844 S12: -0.3796 S13: 0.4614 REMARK 3 S21: 0.1664 S22: 0.1235 S23: 0.0789 REMARK 3 S31: -0.2302 S32: -0.1917 S33: -0.0309 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): -7.7465 -25.2305 -15.2190 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.1569 REMARK 3 T33: 0.4182 T12: -0.0896 REMARK 3 T13: -0.0399 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 3.6602 L22: 2.2059 REMARK 3 L33: 1.7967 L12: -0.4172 REMARK 3 L13: 0.2613 L23: 0.0666 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.5468 S13: -0.9571 REMARK 3 S21: 0.2827 S22: -0.0186 S23: 0.2677 REMARK 3 S31: 0.3515 S32: -0.2524 S33: -0.0102 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.207 REMARK 200 RESOLUTION RANGE LOW (A) : 42.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, 20% V/V GLYCEROL, 0.1 M REMARK 280 MES/IMIDAZOLE, 20 MM 1,6-HEXANEDIOL, 20 MM 1-BUTANOL, 20 MM 1,2- REMARK 280 PROPANEDIOL (RACEMIC), 20 MM 2-PROPANOL, 20 MM 1,4-BUTANEDIOL, REMARK 280 20 MM 1,3-PROPANEDIOL , PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.23000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 ILE A 6 REMARK 465 THR A 7 REMARK 465 ASP A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 ALA A 11 REMARK 465 LYS A 165 REMARK 465 GLU A 166 REMARK 465 THR A 167 REMARK 465 CYS A 168 REMARK 465 ASP A 169 REMARK 465 PRO A 170 REMARK 465 GLU A 214 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ILE B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 465 PRO B 9 REMARK 465 ARG B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 213 REMARK 465 GLU B 214 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 LEU C 4 REMARK 465 GLU C 5 REMARK 465 ILE C 6 REMARK 465 THR C 7 REMARK 465 ASP C 8 REMARK 465 PRO C 9 REMARK 465 ARG C 10 REMARK 465 ALA C 11 REMARK 465 GLU C 214 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 SER D 1 REMARK 465 SER D 2 REMARK 465 LYS D 3 REMARK 465 LEU D 4 REMARK 465 GLU D 5 REMARK 465 ILE D 6 REMARK 465 THR D 7 REMARK 465 ASP D 8 REMARK 465 PRO D 9 REMARK 465 ARG D 10 REMARK 465 ALA D 11 REMARK 465 ALA D 213 REMARK 465 GLU D 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 102 NE CZ NH1 NH2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 LYS D 147 CG CD CE NZ REMARK 470 GLU D 166 CG CD OE1 OE2 REMARK 470 THR D 167 OG1 CG2 REMARK 470 ARG D 202 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG C 197 O TRP C 209 1.53 REMARK 500 HH22 ARG B 197 O TRP B 209 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 106 CB CYS B 106 SG 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 65 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 169 -63.27 -167.21 REMARK 500 GLN B 172 -16.86 -48.25 REMARK 500 THR C 167 -13.09 84.91 REMARK 500 ASP C 169 115.50 -161.43 REMARK 500 GLN C 172 -23.14 98.30 REMARK 500 TYR C 173 77.36 -110.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU2 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU2 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU2 C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ML1 RELATED DB: PDB REMARK 900 DISULFIDE ISOMERASE IN ORTHORHOMBIC CRYSTAL FORM (OXIDIZED STATE) REMARK 900 RELATED ID: 4ML6 RELATED DB: PDB REMARK 900 DISULFIDE ISOMERASE IN MONOCLINIC CRYSTAL FORM (REDUCED STATE) DBREF 4MLY A 1 214 UNP D0FZX2 D0FZX2_PROMI 22 235 DBREF 4MLY B 1 214 UNP D0FZX2 D0FZX2_PROMI 22 235 DBREF 4MLY C 1 214 UNP D0FZX2 D0FZX2_PROMI 22 235 DBREF 4MLY D 1 214 UNP D0FZX2 D0FZX2_PROMI 22 235 SEQADV 4MLY SER A -2 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ASN A -1 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ALA A 0 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY SER B -2 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ASN B -1 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ALA B 0 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY SER C -2 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ASN C -1 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ALA C 0 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY SER D -2 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ASN D -1 UNP D0FZX2 EXPRESSION TAG SEQADV 4MLY ALA D 0 UNP D0FZX2 EXPRESSION TAG SEQRES 1 A 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 A 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 A 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 A 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 A 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 A 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 A 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 A 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 A 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 A 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 A 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 A 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 A 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 A 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 A 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 A 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 A 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 B 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 B 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 B 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 B 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 B 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 B 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 B 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 B 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 B 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 B 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 B 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 B 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 B 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 B 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 B 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 B 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 B 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 C 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 C 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 C 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 C 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 C 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 C 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 C 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 C 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 C 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 C 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 C 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 C 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 C 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 C 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 C 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 C 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 C 217 LEU LYS SER TRP LEU GLU SER ALA GLU SEQRES 1 D 217 SER ASN ALA SER SER LYS LEU GLU ILE THR ASP PRO ARG SEQRES 2 D 217 ALA ALA LYS ILE GLU ASP ILE VAL GLU LEU PRO ILE LYS SEQRES 3 D 217 GLY VAL ARG ALA VAL GLN SER ASP GLY GLN ILE MET PHE SEQRES 4 D 217 LEU SER GLU ASN GLY ARG PHE VAL ILE SER GLY GLN ILE SEQRES 5 D 217 TYR ASP LEU TRP SER LYS LYS PRO LEU ASN THR MET SER SEQRES 6 D 217 GLN MET ARG ASP VAL ALA GLU ARG ILE HIS PHE LYS SER SEQRES 7 D 217 MET GLY MET ASP VAL ASP THR LEU ASN THR VAL SER MET SEQRES 8 D 217 GLY ARG GLY ASP LYS GLU VAL VAL VAL PHE VAL ASP PRO SEQRES 9 D 217 ARG CYS ALA VAL CYS HIS GLN LEU MET GLY ASP ALA LYS SEQRES 10 D 217 SER LEU VAL ASP ASP TYR THR PHE LYS PHE ILE VAL ILE SEQRES 11 D 217 PRO ALA LEU GLY ALA GLU SER ASN ARG LEU ALA LYS ASN SEQRES 12 D 217 LEU TYR CYS ALA LYS ASP LYS THR HIS ALA LEU ASP ALA SEQRES 13 D 217 LEU MET ASN ASN THR LEU GLY SER LEU PRO SER LYS GLU SEQRES 14 D 217 THR CYS ASP PRO GLY GLN TYR ASP GLN THR LEU LEU THR SEQRES 15 D 217 ALA HIS PHE ILE GLY ILE GLU GLY VAL PRO PHE VAL VAL SEQRES 16 D 217 ALA PRO ASP GLY ARG VAL SER LYS GLY ARG PRO LYS ASN SEQRES 17 D 217 LEU LYS SER TRP LEU GLU SER ALA GLU HET BU2 B 301 16 HET BU2 B 302 16 HET BU2 C 301 16 HETNAM BU2 1,3-BUTANEDIOL FORMUL 5 BU2 3(C4 H10 O2) FORMUL 8 HOH *354(H2 O) HELIX 1 1 THR A 60 ARG A 70 1 11 HELIX 2 2 PHE A 73 GLY A 77 5 5 HELIX 3 3 ASP A 79 LEU A 83 5 5 HELIX 4 4 CYS A 103 LYS A 114 1 12 HELIX 5 5 SER A 115 VAL A 117 5 3 HELIX 6 6 GLY A 131 CYS A 143 1 13 HELIX 7 7 ASP A 146 ASN A 157 1 12 HELIX 8 8 THR A 158 LEU A 162 5 5 HELIX 9 9 ASP A 174 GLY A 184 1 11 HELIX 10 10 ASN A 205 SER A 212 1 8 HELIX 11 11 THR B 60 ARG B 70 1 11 HELIX 12 12 ASP B 79 LEU B 83 5 5 HELIX 13 13 CYS B 103 LYS B 114 1 12 HELIX 14 14 SER B 115 VAL B 117 5 3 HELIX 15 15 GLY B 131 CYS B 143 1 13 HELIX 16 16 HIS B 149 ASN B 156 1 8 HELIX 17 17 THR B 158 LEU B 162 5 5 HELIX 18 18 ASP B 174 ILE B 183 1 10 HELIX 19 19 ASN B 205 SER B 212 1 8 HELIX 20 20 THR C 60 ARG C 70 1 11 HELIX 21 21 ASP C 79 LEU C 83 5 5 HELIX 22 22 CYS C 103 SER C 115 1 13 HELIX 23 23 GLY C 131 CYS C 143 1 13 HELIX 24 24 HIS C 149 ASN C 156 1 8 HELIX 25 25 THR C 158 LEU C 162 5 5 HELIX 26 26 ASP C 174 ILE C 183 1 10 HELIX 27 27 ASN C 205 SER C 212 1 8 HELIX 28 28 THR D 60 ARG D 70 1 11 HELIX 29 29 ASP D 79 LEU D 83 5 5 HELIX 30 30 CYS D 103 SER D 115 1 13 HELIX 31 31 GLY D 131 CYS D 143 1 13 HELIX 32 32 HIS D 149 ASN D 156 1 8 HELIX 33 33 THR D 158 LEU D 162 5 5 HELIX 34 34 ASP D 174 ILE D 183 1 10 HELIX 35 35 ASN D 205 SER D 212 1 8 SHEET 1 A 8 ASP A 16 GLU A 19 0 SHEET 2 A 8 VAL D 25 SER D 30 -1 O ALA D 27 N VAL A 18 SHEET 3 A 8 GLN D 33 SER D 38 -1 O MET D 35 N VAL D 28 SHEET 4 A 8 PHE D 43 ASP D 51 -1 O PHE D 43 N SER D 38 SHEET 5 A 8 PHE A 43 ASP A 51 -1 N TYR A 50 O VAL D 44 SHEET 6 A 8 GLN A 33 SER A 38 -1 N PHE A 36 O ILE A 45 SHEET 7 A 8 VAL A 25 SER A 30 -1 N ARG A 26 O LEU A 37 SHEET 8 A 8 ASP D 16 GLU D 19 -1 O VAL D 18 N ALA A 27 SHEET 1 B 4 LYS A 56 LEU A 58 0 SHEET 2 B 4 PHE A 43 ASP A 51 -1 N ASP A 51 O LYS A 56 SHEET 3 B 4 PHE D 43 ASP D 51 -1 O VAL D 44 N TYR A 50 SHEET 4 B 4 LYS D 56 LEU D 58 -1 O LYS D 56 N ASP D 51 SHEET 1 C 5 THR A 85 GLY A 89 0 SHEET 2 C 5 TYR A 120 VAL A 126 -1 O PHE A 122 N MET A 88 SHEET 3 C 5 LYS A 93 VAL A 99 1 N VAL A 95 O LYS A 123 SHEET 4 C 5 PHE A 190 VAL A 192 -1 O VAL A 192 N VAL A 96 SHEET 5 C 5 VAL A 198 LYS A 200 -1 O SER A 199 N VAL A 191 SHEET 1 D 8 ILE B 14 LEU B 20 0 SHEET 2 D 8 VAL C 25 SER C 30 -1 O ALA C 27 N VAL B 18 SHEET 3 D 8 GLN C 33 SER C 38 -1 O LEU C 37 N ARG C 26 SHEET 4 D 8 PHE C 43 ASP C 51 -1 O ILE C 45 N PHE C 36 SHEET 5 D 8 PHE B 43 ASP B 51 -1 N VAL B 44 O TYR C 50 SHEET 6 D 8 GLN B 33 SER B 38 -1 N PHE B 36 O ILE B 45 SHEET 7 D 8 VAL B 25 SER B 30 -1 N ARG B 26 O LEU B 37 SHEET 8 D 8 ILE C 14 GLU C 19 -1 O ASP C 16 N GLN B 29 SHEET 1 E 4 LYS B 56 LEU B 58 0 SHEET 2 E 4 PHE B 43 ASP B 51 -1 N ASP B 51 O LYS B 56 SHEET 3 E 4 PHE C 43 ASP C 51 -1 O TYR C 50 N VAL B 44 SHEET 4 E 4 LYS C 56 LEU C 58 -1 O LYS C 56 N ASP C 51 SHEET 1 F 5 THR B 85 GLY B 89 0 SHEET 2 F 5 TYR B 120 VAL B 126 -1 O PHE B 122 N MET B 88 SHEET 3 F 5 LYS B 93 VAL B 99 1 N VAL B 95 O LYS B 123 SHEET 4 F 5 PHE B 190 VAL B 192 -1 O PHE B 190 N PHE B 98 SHEET 5 F 5 VAL B 198 LYS B 200 -1 O SER B 199 N VAL B 191 SHEET 1 G 5 THR C 85 GLY C 89 0 SHEET 2 G 5 TYR C 120 VAL C 126 -1 O PHE C 122 N MET C 88 SHEET 3 G 5 LYS C 93 VAL C 99 1 N VAL C 95 O LYS C 123 SHEET 4 G 5 PHE C 190 VAL C 192 -1 O VAL C 192 N VAL C 96 SHEET 5 G 5 VAL C 198 LYS C 200 -1 O SER C 199 N VAL C 191 SHEET 1 H 5 THR D 85 GLY D 89 0 SHEET 2 H 5 TYR D 120 VAL D 126 -1 O PHE D 122 N MET D 88 SHEET 3 H 5 LYS D 93 VAL D 99 1 N VAL D 95 O LYS D 123 SHEET 4 H 5 PHE D 190 VAL D 192 -1 O VAL D 192 N VAL D 96 SHEET 5 H 5 VAL D 198 LYS D 200 -1 O SER D 199 N VAL D 191 SSBOND 1 CYS A 103 CYS A 106 1555 1555 2.13 SSBOND 2 CYS B 103 CYS B 106 1555 1555 2.09 SSBOND 3 CYS B 143 CYS B 168 1555 1555 2.04 SSBOND 4 CYS C 103 CYS C 106 1555 1555 2.16 SSBOND 5 CYS C 143 CYS C 168 1555 1555 2.05 SSBOND 6 CYS D 103 CYS D 106 1555 1555 2.13 SSBOND 7 CYS D 143 CYS D 168 1555 1555 2.05 CISPEP 1 VAL A 188 PRO A 189 0 -3.80 CISPEP 2 CYS B 168 ASP B 169 0 -12.28 CISPEP 3 PRO B 170 GLY B 171 0 8.01 CISPEP 4 VAL B 188 PRO B 189 0 -5.30 CISPEP 5 VAL C 188 PRO C 189 0 -3.33 CISPEP 6 SER C 212 ALA C 213 0 22.13 CISPEP 7 GLU D 166 THR D 167 0 -5.27 CISPEP 8 VAL D 188 PRO D 189 0 -4.02 SITE 1 AC1 4 ARG B 26 GLU B 39 ILE D 185 GLY D 187 SITE 1 AC2 4 ALA B 68 ILE B 71 PRO C 21 ARG C 42 SITE 1 AC3 5 ARG A 26 GLU A 39 ILE C 185 GLU C 186 SITE 2 AC3 5 GLY C 187 CRYST1 54.580 110.460 74.100 90.00 93.10 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018322 0.000000 0.000992 0.00000 SCALE2 0.000000 0.009053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013515 0.00000