HEADER OXIDOREDUCTASE 09-SEP-13 4MMM TITLE HUMAN PDRX5 COMPLEX WITH A LIGAND BP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: ALU COREPRESSOR 1, ANTIOXIDANT ENZYME B166, AOEB166, LIVER COMPND 5 TISSUE 2D-PAGE SPOT 71B, PLP, PEROXIREDOXIN V, PRX-V, PEROXISOMAL COMPND 6 ANTIOXIDANT ENZYME, TPX TYPE VI, THIOREDOXIN PEROXIDASE PMP20, COMPND 7 THIOREDOXIN REDUCTASE; COMPND 8 EC: 1.11.1.15; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRDX5, ACR1, SBBI10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.GUICHOU REVDAT 2 20-MAR-24 4MMM 1 REMARK SEQADV REVDAT 1 30-JUL-14 4MMM 0 JRNL AUTH C.AGUIRRE,T.T.BRINK,J.F.GUICHOU,O.CALA,I.KRIMM JRNL TITL COMPARING BINDING MODES OF ANALOGOUS FRAGMENTS USING NMR IN JRNL TITL 2 FRAGMENT-BASED DRUG DESIGN: APPLICATION TO PRDX5 JRNL REF PLOS ONE V. 9 02300 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25025339 JRNL DOI 10.1371/JOURNAL.PONE.0102300 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 119074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6420 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 462 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 861 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : 8.17000 REMARK 3 B33 (A**2) : -7.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.72000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.013 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.014 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.708 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5010 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5016 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6796 ; 1.380 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11594 ; 0.762 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 6.093 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;37.221 ;25.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 865 ;14.470 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 782 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5718 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1047 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2636 ; 0.599 ; 1.264 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2635 ; 0.598 ; 1.264 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3303 ; 0.991 ; 1.892 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3304 ; 0.991 ; 1.893 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2374 ; 0.750 ; 1.351 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2375 ; 0.750 ; 1.351 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3485 ; 1.200 ; 1.994 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6345 ; 3.745 ;11.321 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6346 ; 3.745 ;11.323 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.480 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07244 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 44.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3350, 0.1M SODIUM CITRATE REMARK 280 BUFFER (PH 5.3), 0.2M POTASSIUM SODIUM TARTRATE, 5MM 1,4-DITHIO- REMARK 280 DL-THREITOL, 0.02%(W/V) SODIUM AZIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.61400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS E -6 REMARK 465 HIS E -5 REMARK 465 HIS E -4 REMARK 465 HIS E -3 REMARK 465 HIS E -2 REMARK 465 HIS E -1 REMARK 465 HIS G -6 REMARK 465 HIS G -5 REMARK 465 HIS G -4 REMARK 465 HIS G -3 REMARK 465 HIS G -2 REMARK 465 HIS G -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH G 391 O HOH G 392 1.86 REMARK 500 NH2 ARG E 86 O HOH E 363 1.93 REMARK 500 O HOH E 379 O HOH E 380 1.98 REMARK 500 O HOH A 335 O HOH A 535 1.99 REMARK 500 OG1 THR A 108 O HOH A 503 2.02 REMARK 500 O HOH E 380 O HOH E 381 2.09 REMARK 500 O LEU C 125 O HOH C 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 1 126.10 -34.59 REMARK 500 THR A 50 -55.32 -121.55 REMARK 500 ASP A 113 -162.66 -78.04 REMARK 500 THR A 150 -99.27 -135.57 REMARK 500 THR C 50 -53.94 -123.95 REMARK 500 ASP C 113 -161.40 -76.29 REMARK 500 ASP C 134 53.13 39.90 REMARK 500 THR C 150 -99.25 -133.02 REMARK 500 THR E 50 -57.86 -123.88 REMARK 500 ASP E 113 -158.61 -80.86 REMARK 500 THR E 150 -100.60 -126.77 REMARK 500 THR G 50 -54.32 -123.18 REMARK 500 LYS G 93 -50.13 -121.16 REMARK 500 ASP G 113 -159.60 -79.40 REMARK 500 THR G 150 -94.82 -137.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BP7 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BP7 C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K7I RELATED DB: PDB REMARK 900 RELATED ID: 4K7N RELATED DB: PDB REMARK 900 RELATED ID: 4K7O RELATED DB: PDB DBREF 4MMM A 1 161 UNP P30044 PRDX5_HUMAN 54 214 DBREF 4MMM C 1 161 UNP P30044 PRDX5_HUMAN 54 214 DBREF 4MMM E 1 161 UNP P30044 PRDX5_HUMAN 54 214 DBREF 4MMM G 1 161 UNP P30044 PRDX5_HUMAN 54 214 SEQADV 4MMM HIS A -6 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS A -5 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS A -4 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS A -3 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS A -2 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS A -1 UNP P30044 EXPRESSION TAG SEQADV 4MMM SER A 0 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS C -6 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS C -5 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS C -4 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS C -3 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS C -2 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS C -1 UNP P30044 EXPRESSION TAG SEQADV 4MMM SER C 0 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS E -6 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS E -5 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS E -4 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS E -3 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS E -2 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS E -1 UNP P30044 EXPRESSION TAG SEQADV 4MMM SER E 0 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS G -6 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS G -5 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS G -4 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS G -3 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS G -2 UNP P30044 EXPRESSION TAG SEQADV 4MMM HIS G -1 UNP P30044 EXPRESSION TAG SEQADV 4MMM SER G 0 UNP P30044 EXPRESSION TAG SEQRES 1 A 168 HIS HIS HIS HIS HIS HIS SER ALA PRO ILE LYS VAL GLY SEQRES 2 A 168 ASP ALA ILE PRO ALA VAL GLU VAL PHE GLU GLY GLU PRO SEQRES 3 A 168 GLY ASN LYS VAL ASN LEU ALA GLU LEU PHE LYS GLY LYS SEQRES 4 A 168 LYS GLY VAL LEU PHE GLY VAL PRO GLY ALA PHE THR PRO SEQRES 5 A 168 GLY CYS SER LYS THR HIS LEU PRO GLY PHE VAL GLU GLN SEQRES 6 A 168 ALA GLU ALA LEU LYS ALA LYS GLY VAL GLN VAL VAL ALA SEQRES 7 A 168 CYS LEU SER VAL ASN ASP ALA PHE VAL THR GLY GLU TRP SEQRES 8 A 168 GLY ARG ALA HIS LYS ALA GLU GLY LYS VAL ARG LEU LEU SEQRES 9 A 168 ALA ASP PRO THR GLY ALA PHE GLY LYS GLU THR ASP LEU SEQRES 10 A 168 LEU LEU ASP ASP SER LEU VAL SER ILE PHE GLY ASN ARG SEQRES 11 A 168 ARG LEU LYS ARG PHE SER MET VAL VAL GLN ASP GLY ILE SEQRES 12 A 168 VAL LYS ALA LEU ASN VAL GLU PRO ASP GLY THR GLY LEU SEQRES 13 A 168 THR CYS SER LEU ALA PRO ASN ILE ILE SER GLN LEU SEQRES 1 C 168 HIS HIS HIS HIS HIS HIS SER ALA PRO ILE LYS VAL GLY SEQRES 2 C 168 ASP ALA ILE PRO ALA VAL GLU VAL PHE GLU GLY GLU PRO SEQRES 3 C 168 GLY ASN LYS VAL ASN LEU ALA GLU LEU PHE LYS GLY LYS SEQRES 4 C 168 LYS GLY VAL LEU PHE GLY VAL PRO GLY ALA PHE THR PRO SEQRES 5 C 168 GLY CYS SER LYS THR HIS LEU PRO GLY PHE VAL GLU GLN SEQRES 6 C 168 ALA GLU ALA LEU LYS ALA LYS GLY VAL GLN VAL VAL ALA SEQRES 7 C 168 CYS LEU SER VAL ASN ASP ALA PHE VAL THR GLY GLU TRP SEQRES 8 C 168 GLY ARG ALA HIS LYS ALA GLU GLY LYS VAL ARG LEU LEU SEQRES 9 C 168 ALA ASP PRO THR GLY ALA PHE GLY LYS GLU THR ASP LEU SEQRES 10 C 168 LEU LEU ASP ASP SER LEU VAL SER ILE PHE GLY ASN ARG SEQRES 11 C 168 ARG LEU LYS ARG PHE SER MET VAL VAL GLN ASP GLY ILE SEQRES 12 C 168 VAL LYS ALA LEU ASN VAL GLU PRO ASP GLY THR GLY LEU SEQRES 13 C 168 THR CYS SER LEU ALA PRO ASN ILE ILE SER GLN LEU SEQRES 1 E 168 HIS HIS HIS HIS HIS HIS SER ALA PRO ILE LYS VAL GLY SEQRES 2 E 168 ASP ALA ILE PRO ALA VAL GLU VAL PHE GLU GLY GLU PRO SEQRES 3 E 168 GLY ASN LYS VAL ASN LEU ALA GLU LEU PHE LYS GLY LYS SEQRES 4 E 168 LYS GLY VAL LEU PHE GLY VAL PRO GLY ALA PHE THR PRO SEQRES 5 E 168 GLY CYS SER LYS THR HIS LEU PRO GLY PHE VAL GLU GLN SEQRES 6 E 168 ALA GLU ALA LEU LYS ALA LYS GLY VAL GLN VAL VAL ALA SEQRES 7 E 168 CYS LEU SER VAL ASN ASP ALA PHE VAL THR GLY GLU TRP SEQRES 8 E 168 GLY ARG ALA HIS LYS ALA GLU GLY LYS VAL ARG LEU LEU SEQRES 9 E 168 ALA ASP PRO THR GLY ALA PHE GLY LYS GLU THR ASP LEU SEQRES 10 E 168 LEU LEU ASP ASP SER LEU VAL SER ILE PHE GLY ASN ARG SEQRES 11 E 168 ARG LEU LYS ARG PHE SER MET VAL VAL GLN ASP GLY ILE SEQRES 12 E 168 VAL LYS ALA LEU ASN VAL GLU PRO ASP GLY THR GLY LEU SEQRES 13 E 168 THR CYS SER LEU ALA PRO ASN ILE ILE SER GLN LEU SEQRES 1 G 168 HIS HIS HIS HIS HIS HIS SER ALA PRO ILE LYS VAL GLY SEQRES 2 G 168 ASP ALA ILE PRO ALA VAL GLU VAL PHE GLU GLY GLU PRO SEQRES 3 G 168 GLY ASN LYS VAL ASN LEU ALA GLU LEU PHE LYS GLY LYS SEQRES 4 G 168 LYS GLY VAL LEU PHE GLY VAL PRO GLY ALA PHE THR PRO SEQRES 5 G 168 GLY CYS SER LYS THR HIS LEU PRO GLY PHE VAL GLU GLN SEQRES 6 G 168 ALA GLU ALA LEU LYS ALA LYS GLY VAL GLN VAL VAL ALA SEQRES 7 G 168 CYS LEU SER VAL ASN ASP ALA PHE VAL THR GLY GLU TRP SEQRES 8 G 168 GLY ARG ALA HIS LYS ALA GLU GLY LYS VAL ARG LEU LEU SEQRES 9 G 168 ALA ASP PRO THR GLY ALA PHE GLY LYS GLU THR ASP LEU SEQRES 10 G 168 LEU LEU ASP ASP SER LEU VAL SER ILE PHE GLY ASN ARG SEQRES 11 G 168 ARG LEU LYS ARG PHE SER MET VAL VAL GLN ASP GLY ILE SEQRES 12 G 168 VAL LYS ALA LEU ASN VAL GLU PRO ASP GLY THR GLY LEU SEQRES 13 G 168 THR CYS SER LEU ALA PRO ASN ILE ILE SER GLN LEU HET BP7 A 201 14 HET BP7 C 201 14 HETNAM BP7 1,1'-BIPHENYL-3,4-DIOL HETSYN BP7 3,4-DIHYDROXYBIPHENYL FORMUL 5 BP7 2(C12 H10 O2) FORMUL 7 HOH *861(H2 O) HELIX 1 1 LEU A 25 LYS A 30 1 6 HELIX 2 2 THR A 44 THR A 50 1 7 HELIX 3 3 THR A 50 GLN A 58 1 9 HELIX 4 4 GLN A 58 LYS A 65 1 8 HELIX 5 5 ASP A 77 HIS A 88 1 12 HELIX 6 6 GLY A 102 ASP A 109 1 8 HELIX 7 7 ASP A 113 SER A 115 5 3 HELIX 8 8 LEU A 116 GLY A 121 1 6 HELIX 9 9 LEU A 153 LEU A 161 1 9 HELIX 10 10 LEU C 25 LYS C 30 1 6 HELIX 11 11 THR C 44 THR C 50 1 7 HELIX 12 12 THR C 50 GLN C 58 1 9 HELIX 13 13 GLN C 58 LYS C 65 1 8 HELIX 14 14 ASP C 77 HIS C 88 1 12 HELIX 15 15 GLY C 102 ASP C 109 1 8 HELIX 16 16 LEU C 116 GLY C 121 1 6 HELIX 17 17 LEU C 153 ILE C 158 1 6 HELIX 18 18 SER C 159 LEU C 161 5 3 HELIX 19 19 LEU E 25 LYS E 30 1 6 HELIX 20 20 THR E 44 THR E 50 1 7 HELIX 21 21 THR E 50 GLN E 58 1 9 HELIX 22 22 GLN E 58 LYS E 65 1 8 HELIX 23 23 ASP E 77 HIS E 88 1 12 HELIX 24 24 GLY E 102 ASP E 109 1 8 HELIX 25 25 LEU E 116 GLY E 121 1 6 HELIX 26 26 LEU E 153 SER E 159 1 7 HELIX 27 27 LEU G 25 LYS G 30 1 6 HELIX 28 28 THR G 44 THR G 50 1 7 HELIX 29 29 THR G 50 GLN G 58 1 9 HELIX 30 30 GLN G 58 LYS G 65 1 8 HELIX 31 31 ASP G 77 HIS G 88 1 12 HELIX 32 32 GLY G 102 ASP G 109 1 8 HELIX 33 33 LEU G 116 GLY G 121 1 6 HELIX 34 34 LEU G 153 ILE G 158 1 6 HELIX 35 35 SER G 159 LEU G 161 5 3 SHEET 1 A 2 GLU A 13 PHE A 15 0 SHEET 2 A 2 LYS A 22 ASN A 24 -1 O VAL A 23 N VAL A 14 SHEET 1 B 5 ARG A 95 ALA A 98 0 SHEET 2 B 5 VAL A 67 SER A 74 1 N CYS A 72 O LEU A 97 SHEET 3 B 5 LYS A 33 GLY A 38 1 N LYS A 33 O GLN A 68 SHEET 4 B 5 PHE A 128 GLN A 133 -1 O VAL A 132 N GLY A 34 SHEET 5 B 5 ILE A 136 VAL A 142 -1 O LYS A 138 N VAL A 131 SHEET 1 C 2 GLU C 13 PHE C 15 0 SHEET 2 C 2 LYS C 22 ASN C 24 -1 O VAL C 23 N VAL C 14 SHEET 1 D 5 ARG C 95 ALA C 98 0 SHEET 2 D 5 VAL C 67 SER C 74 1 N CYS C 72 O LEU C 97 SHEET 3 D 5 LYS C 33 GLY C 38 1 N LYS C 33 O GLN C 68 SHEET 4 D 5 PHE C 128 GLN C 133 -1 O VAL C 132 N GLY C 34 SHEET 5 D 5 ILE C 136 VAL C 142 -1 O ILE C 136 N GLN C 133 SHEET 1 E 2 GLU E 13 PHE E 15 0 SHEET 2 E 2 LYS E 22 ASN E 24 -1 O VAL E 23 N VAL E 14 SHEET 1 F 5 ARG E 95 ALA E 98 0 SHEET 2 F 5 VAL E 69 SER E 74 1 N CYS E 72 O LEU E 97 SHEET 3 F 5 LYS E 33 GLY E 38 1 N VAL E 35 O ALA E 71 SHEET 4 F 5 PHE E 128 GLN E 133 -1 O VAL E 132 N GLY E 34 SHEET 5 F 5 ILE E 136 VAL E 142 -1 O ASN E 141 N SER E 129 SHEET 1 G 2 GLU G 13 PHE G 15 0 SHEET 2 G 2 LYS G 22 ASN G 24 -1 O VAL G 23 N VAL G 14 SHEET 1 H 5 ARG G 95 ALA G 98 0 SHEET 2 H 5 VAL G 69 SER G 74 1 N CYS G 72 O LEU G 97 SHEET 3 H 5 LYS G 33 GLY G 38 1 N PHE G 37 O LEU G 73 SHEET 4 H 5 PHE G 128 GLN G 133 -1 O VAL G 132 N GLY G 34 SHEET 5 H 5 ILE G 136 VAL G 142 -1 O LYS G 138 N VAL G 131 SITE 1 AC1 9 THR A 44 GLY A 46 CYS A 47 ILE A 119 SITE 2 AC1 9 PHE A 120 ARG A 127 HOH A 347 HOH A 463 SITE 3 AC1 9 PHE E 79 SITE 1 AC2 10 PRO A 144 THR C 44 GLY C 46 CYS C 47 SITE 2 AC2 10 PHE C 120 ARG C 127 HOH C 426 HOH C 437 SITE 3 AC2 10 PRO G 19 PHE G 79 CRYST1 66.467 101.228 58.754 90.00 90.09 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015045 0.000000 0.000023 0.00000 SCALE2 0.000000 0.009879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017020 0.00000