HEADER TRANSFERASE 10-SEP-13 4MN6 TITLE CRYSTAL STRUCTURE OF TRUNCATED PAS DOMAIN FROM S. AUREUS YYCG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN KINASE WALK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 73-177; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: VICK, WALK, YYCG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS PAS DOMAIN, HISTIDINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SHAIKH,R.HVORUP,B.WINNEN,B.M.COLLINS,G.F.KING REVDAT 2 20-SEP-23 4MN6 1 REMARK SEQADV LINK REVDAT 1 10-SEP-14 4MN6 0 JRNL AUTH N.SHAIKH,R.HVORUP,B.WINNEN,B.M.COLLINS,G.F.KING JRNL TITL CRYSTAL STRUCTURE OF PAS DOMAIN OF S. AUREUS YYCG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8323 - 3.8154 0.99 2586 129 0.1839 0.2443 REMARK 3 2 3.8154 - 3.0286 1.00 2468 134 0.2301 0.2718 REMARK 3 3 3.0286 - 2.6458 1.00 2447 122 0.2684 0.3605 REMARK 3 4 2.6458 - 2.4039 1.00 2417 141 0.2683 0.3084 REMARK 3 5 2.4039 - 2.2316 1.00 2414 124 0.2730 0.3603 REMARK 3 6 2.2316 - 2.1000 1.00 2393 127 0.2933 0.3115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1502 REMARK 3 ANGLE : 1.390 2017 REMARK 3 CHIRALITY : 0.055 246 REMARK 3 PLANARITY : 0.005 251 REMARK 3 DIHEDRAL : 15.248 553 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4843 -13.4068 -8.6146 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.5734 REMARK 3 T33: 0.3727 T12: -0.0753 REMARK 3 T13: -0.0650 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 7.5132 L22: 8.1017 REMARK 3 L33: 8.6692 L12: 2.0435 REMARK 3 L13: -0.3369 L23: 1.6348 REMARK 3 S TENSOR REMARK 3 S11: 0.1858 S12: -0.5181 S13: -0.5344 REMARK 3 S21: 0.6524 S22: -0.2555 S23: -0.3837 REMARK 3 S31: 0.3810 S32: 0.1883 S33: 0.0300 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6244 -19.1031 -12.9949 REMARK 3 T TENSOR REMARK 3 T11: 0.5792 T22: 0.6570 REMARK 3 T33: 0.7343 T12: -0.1106 REMARK 3 T13: -0.1871 T23: 0.0556 REMARK 3 L TENSOR REMARK 3 L11: 6.0126 L22: 6.0557 REMARK 3 L33: 5.2827 L12: -2.2919 REMARK 3 L13: -5.0856 L23: 3.1774 REMARK 3 S TENSOR REMARK 3 S11: -0.3051 S12: -0.2561 S13: 0.6877 REMARK 3 S21: 1.4294 S22: -0.2101 S23: -0.7185 REMARK 3 S31: -0.0505 S32: -0.3748 S33: 0.5898 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7135 -14.0144 -16.2917 REMARK 3 T TENSOR REMARK 3 T11: 0.3649 T22: 0.5264 REMARK 3 T33: 0.3434 T12: -0.0368 REMARK 3 T13: 0.0086 T23: -0.1389 REMARK 3 L TENSOR REMARK 3 L11: 0.9496 L22: 5.2510 REMARK 3 L33: 6.5700 L12: 1.9551 REMARK 3 L13: 1.3889 L23: 0.4160 REMARK 3 S TENSOR REMARK 3 S11: -0.7391 S12: 1.4759 S13: -0.6703 REMARK 3 S21: -0.1975 S22: 0.6685 S23: -0.4816 REMARK 3 S31: -0.5404 S32: 0.8288 S33: 0.1607 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2857 -24.9926 -18.3151 REMARK 3 T TENSOR REMARK 3 T11: 0.5264 T22: 0.4549 REMARK 3 T33: 0.6606 T12: -0.0272 REMARK 3 T13: -0.0634 T23: -0.1678 REMARK 3 L TENSOR REMARK 3 L11: 8.4819 L22: 4.5202 REMARK 3 L33: 8.7784 L12: -0.4883 REMARK 3 L13: -2.7535 L23: 0.6524 REMARK 3 S TENSOR REMARK 3 S11: 0.5994 S12: -0.0874 S13: 0.1989 REMARK 3 S21: 0.5039 S22: -0.0822 S23: -0.5826 REMARK 3 S31: -0.1695 S32: -0.5530 S33: -0.5705 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 285 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3571 -23.4107 -24.4440 REMARK 3 T TENSOR REMARK 3 T11: 0.6110 T22: 0.9600 REMARK 3 T33: 0.5855 T12: 0.2406 REMARK 3 T13: -0.0660 T23: -0.1119 REMARK 3 L TENSOR REMARK 3 L11: 7.3627 L22: 3.9002 REMARK 3 L33: 4.9265 L12: -1.9951 REMARK 3 L13: -1.6610 L23: 3.5840 REMARK 3 S TENSOR REMARK 3 S11: 0.2040 S12: 0.5086 S13: 0.6804 REMARK 3 S21: -1.2950 S22: -0.8835 S23: 1.0804 REMARK 3 S31: -0.6146 S32: -2.0733 S33: 0.4560 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 312 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1955 -37.6744 -18.4229 REMARK 3 T TENSOR REMARK 3 T11: 1.1820 T22: 0.7341 REMARK 3 T33: 0.7068 T12: -0.1877 REMARK 3 T13: 0.3297 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 6.0399 L22: 6.4821 REMARK 3 L33: 5.7952 L12: -6.2203 REMARK 3 L13: 2.9427 L23: -2.2159 REMARK 3 S TENSOR REMARK 3 S11: -0.6792 S12: -0.0157 S13: -2.1461 REMARK 3 S21: -0.3091 S22: 0.1057 S23: 1.8859 REMARK 3 S31: 3.5753 S32: -1.7192 S33: 0.5159 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 331 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3420 -32.3395 -23.8958 REMARK 3 T TENSOR REMARK 3 T11: 0.4391 T22: 0.5051 REMARK 3 T33: 0.4756 T12: -0.0011 REMARK 3 T13: 0.0824 T23: -0.0858 REMARK 3 L TENSOR REMARK 3 L11: 3.5546 L22: 8.5050 REMARK 3 L33: 4.2466 L12: -1.1823 REMARK 3 L13: -2.0585 L23: 5.4413 REMARK 3 S TENSOR REMARK 3 S11: -0.8925 S12: -0.5380 S13: -0.2444 REMARK 3 S21: 0.3479 S22: -0.5252 S23: -0.0827 REMARK 3 S31: 1.3325 S32: -1.0822 S33: 1.0051 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 351 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9893 -27.4921 -0.2098 REMARK 3 T TENSOR REMARK 3 T11: 1.1372 T22: 1.6851 REMARK 3 T33: 1.0679 T12: 0.3211 REMARK 3 T13: 0.0419 T23: -0.4916 REMARK 3 L TENSOR REMARK 3 L11: 0.0697 L22: 3.9363 REMARK 3 L33: 2.2513 L12: -0.5170 REMARK 3 L13: 0.3956 L23: -2.9844 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -1.4913 S13: 1.4537 REMARK 3 S21: 0.3419 S22: -0.7786 S23: 0.9293 REMARK 3 S31: 1.5894 S32: 0.5139 S33: 0.6256 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 356 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8184 -28.5851 -22.4629 REMARK 3 T TENSOR REMARK 3 T11: 0.4729 T22: 0.3427 REMARK 3 T33: 0.3110 T12: -0.0106 REMARK 3 T13: -0.0150 T23: -0.0886 REMARK 3 L TENSOR REMARK 3 L11: 8.4138 L22: 5.8267 REMARK 3 L33: 3.2696 L12: -2.4266 REMARK 3 L13: -5.0327 L23: 2.8958 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: -0.0788 S13: 0.7627 REMARK 3 S21: 0.1160 S22: 0.5150 S23: -0.4833 REMARK 3 S31: 0.0377 S32: 0.1745 S33: -0.7405 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15549 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 51.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.01130 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 4MN5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS (PH 8.0), 20 MM ZNCL2, 28% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.82000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.82000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 264 REMARK 465 SER A 265 REMARK 465 ASP A 266 REMARK 465 SER A 267 REMARK 465 VAL A 268 REMARK 465 GLN A 324 REMARK 465 GLU A 325 REMARK 465 ASN A 335 REMARK 465 GLU A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 370 REMARK 465 GLY B 264 REMARK 465 SER B 265 REMARK 465 ASP B 266 REMARK 465 GLN B 324 REMARK 465 GLU B 325 REMARK 465 ASN B 326 REMARK 465 ASN B 327 REMARK 465 ASP B 328 REMARK 465 SER B 329 REMARK 465 ASN B 335 REMARK 465 GLU B 336 REMARK 465 GLU B 337 REMARK 465 GLU B 338 REMARK 465 GLN B 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 340 O HOH A 521 2.13 REMARK 500 O HOH B 513 O HOH B 514 2.17 REMARK 500 NZ LYS B 300 O HOH B 507 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 340 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 303 -50.70 -121.33 REMARK 500 LEU A 340 -167.04 -166.57 REMARK 500 GLU B 317 1.68 -154.60 REMARK 500 GLU B 368 131.77 -37.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 340 ILE A 341 137.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 271 ND1 REMARK 620 2 ASP A 274 OD1 114.6 REMARK 620 3 ASP A 274 OD2 86.7 54.7 REMARK 620 4 HIS A 364 ND1 114.4 115.5 89.7 REMARK 620 5 GLU A 368 OE2 77.8 85.1 125.3 144.4 REMARK 620 6 GLU A 368 OE1 102.9 120.7 170.3 85.2 59.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 271 ND1 REMARK 620 2 ASP B 274 OD1 124.8 REMARK 620 3 HIS B 364 ND1 109.1 107.0 REMARK 620 4 GLU B 368 OE1 97.0 108.9 109.2 REMARK 620 5 GLU B 368 OE2 83.4 73.7 162.3 55.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MN5 RELATED DB: PDB DBREF 4MN6 A 266 370 UNP Q9RDT3 WALK_STAAU 73 177 DBREF 4MN6 B 266 370 UNP Q9RDT3 WALK_STAAU 73 177 SEQADV 4MN6 GLY A 264 UNP Q9RDT3 EXPRESSION TAG SEQADV 4MN6 SER A 265 UNP Q9RDT3 EXPRESSION TAG SEQADV 4MN6 GLY B 264 UNP Q9RDT3 EXPRESSION TAG SEQADV 4MN6 SER B 265 UNP Q9RDT3 EXPRESSION TAG SEQRES 1 A 107 GLY SER ASP SER VAL ILE THR HIS MET SER ASP GLY ILE SEQRES 2 A 107 ILE ALA THR ASP ARG ARG GLY ARG ILE ARG ILE VAL ASN SEQRES 3 A 107 ASP MET ALA LEU LYS MET LEU GLY MET ALA LYS GLU ASP SEQRES 4 A 107 ILE ILE GLY TYR TYR MET LEU SER VAL LEU SER LEU GLU SEQRES 5 A 107 ASP GLU PHE LYS LEU GLU GLU ILE GLN GLU ASN ASN ASP SEQRES 6 A 107 SER PHE LEU LEU ASP LEU ASN GLU GLU GLU GLY LEU ILE SEQRES 7 A 107 ALA ARG VAL ASN PHE SER THR ILE VAL GLN GLU THR GLY SEQRES 8 A 107 PHE VAL THR GLY TYR ILE ALA VAL LEU HIS ASP VAL THR SEQRES 9 A 107 GLU GLN GLN SEQRES 1 B 107 GLY SER ASP SER VAL ILE THR HIS MET SER ASP GLY ILE SEQRES 2 B 107 ILE ALA THR ASP ARG ARG GLY ARG ILE ARG ILE VAL ASN SEQRES 3 B 107 ASP MET ALA LEU LYS MET LEU GLY MET ALA LYS GLU ASP SEQRES 4 B 107 ILE ILE GLY TYR TYR MET LEU SER VAL LEU SER LEU GLU SEQRES 5 B 107 ASP GLU PHE LYS LEU GLU GLU ILE GLN GLU ASN ASN ASP SEQRES 6 B 107 SER PHE LEU LEU ASP LEU ASN GLU GLU GLU GLY LEU ILE SEQRES 7 B 107 ALA ARG VAL ASN PHE SER THR ILE VAL GLN GLU THR GLY SEQRES 8 B 107 PHE VAL THR GLY TYR ILE ALA VAL LEU HIS ASP VAL THR SEQRES 9 B 107 GLU GLN GLN HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *53(H2 O) HELIX 1 1 ASN A 289 GLY A 297 1 9 HELIX 2 2 ALA A 299 ILE A 303 5 5 HELIX 3 3 TYR A 307 LEU A 312 1 6 HELIX 4 4 LYS A 319 ILE A 323 5 5 HELIX 5 5 ASN B 289 GLY B 297 1 9 HELIX 6 6 ALA B 299 ILE B 303 5 5 HELIX 7 7 TYR B 307 LEU B 312 1 6 HELIX 8 8 LYS B 319 ILE B 323 5 5 SHEET 1 A 6 ILE A 285 VAL A 288 0 SHEET 2 A 6 GLY A 275 ASP A 280 -1 N ALA A 278 O ARG A 286 SHEET 3 A 6 VAL A 356 ASP A 365 -1 O LEU A 363 N GLY A 275 SHEET 4 A 6 ILE A 341 VAL A 350 -1 N ARG A 343 O HIS A 364 SHEET 5 A 6 SER A 329 ASP A 333 -1 N LEU A 332 O ALA A 342 SHEET 6 A 6 ILE B 269 THR B 270 -1 O THR B 270 N SER A 329 SHEET 1 B 5 ILE B 285 VAL B 288 0 SHEET 2 B 5 GLY B 275 THR B 279 -1 N ALA B 278 O ARG B 286 SHEET 3 B 5 VAL B 356 ASP B 365 -1 O ALA B 361 N ILE B 277 SHEET 4 B 5 ILE B 341 VAL B 350 -1 N ARG B 343 O HIS B 364 SHEET 5 B 5 LEU B 331 ASP B 333 -1 N LEU B 332 O ALA B 342 LINK ND1 HIS A 271 ZN ZN A 401 1555 1555 2.09 LINK OD1 ASP A 274 ZN ZN A 401 1555 1555 2.17 LINK OD2 ASP A 274 ZN ZN A 401 1555 1555 2.63 LINK ND1 HIS A 364 ZN ZN A 401 1555 1555 1.86 LINK OE2 GLU A 368 ZN ZN A 401 1555 1555 2.01 LINK OE1 GLU A 368 ZN ZN A 401 1555 1555 2.36 LINK ND1 HIS B 271 ZN ZN B 401 1555 1555 1.98 LINK OD1 ASP B 274 ZN ZN B 401 1555 1555 2.04 LINK ND1 HIS B 364 ZN ZN B 401 1555 1555 1.95 LINK OE1 GLU B 368 ZN ZN B 401 1555 1555 2.32 LINK OE2 GLU B 368 ZN ZN B 401 1555 1555 2.35 SITE 1 AC1 4 HIS A 271 ASP A 274 HIS A 364 GLU A 368 SITE 1 AC2 4 HIS B 271 ASP B 274 HIS B 364 GLU B 368 CRYST1 43.650 61.150 95.640 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010456 0.00000