HEADER VIRAL PROTEIN 12-SEP-13 4MOD TITLE STRUCTURE OF THE MERS-COV FUSION CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HR1 OF S PROTEIN, LINKER, HR2 OF S PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: AMINO ACIDS 992-1054 (HR1) AND AMINO ACIDS 1252-1286 COMPND 6 (HR2) LINKED BY A 22-RESIDUE LINKER (LVPRGSGGSGGSGGLEVLFQGP) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN BETACORONAVIRUS 2C EMC/2012, SYNTHETIC SOURCE 3 CONSTRUCT; SOURCE 4 ORGANISM_COMMON: MERS-COV; SOURCE 5 ORGANISM_TAXID: 1235996, 32630; SOURCE 6 STRAIN: HCOV-EMC; SOURCE 7 GENE: SPIKE, S; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS MERS-COV, VIRAL ENVELOPE PROTEINS, SPIKE, TRIMER OF HAIRPINS, 6-HELIX KEYWDS 2 BUNDLE, MEMBRANE FUSION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.GAO,G.LU,J.QI,Y.LI,Y.WU,Y.DENG,H.GENG,H.XIAO,W.TAN,J.YAN,G.F.GAO REVDAT 4 08-NOV-23 4MOD 1 REMARK REVDAT 3 24-AUG-22 4MOD 1 JRNL SEQADV REVDAT 2 28-JUN-17 4MOD 1 SOURCE REVDAT 1 09-OCT-13 4MOD 0 JRNL AUTH J.GAO,G.LU,J.QI,Y.LI,Y.WU,Y.DENG,H.GENG,H.LI,Q.WANG,H.XIAO, JRNL AUTH 2 W.TAN,J.YAN,G.F.GAO JRNL TITL STRUCTURE OF THE FUSION CORE AND INHIBITION OF FUSION BY A JRNL TITL 2 HEPTAD REPEAT PEPTIDE DERIVED FROM THE S PROTEIN OF MIDDLE JRNL TITL 3 EAST RESPIRATORY SYNDROME CORONAVIRUS. JRNL REF J.VIROL. V. 87 13134 2013 JRNL REFN ESSN 1098-5514 JRNL PMID 24067982 JRNL DOI 10.1128/JVI.02433-13 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7904 - 3.0171 0.98 2840 146 0.1869 0.1952 REMARK 3 2 3.0171 - 2.3949 1.00 2896 148 0.1844 0.2165 REMARK 3 3 2.3949 - 2.0922 1.00 2932 148 0.1784 0.2257 REMARK 3 4 2.0922 - 1.9009 1.00 2918 141 0.1876 0.2625 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1210 REMARK 3 ANGLE : 1.033 1638 REMARK 3 CHIRALITY : 0.071 200 REMARK 3 PLANARITY : 0.003 214 REMARK 3 DIHEDRAL : 19.300 448 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -8.1446 10.6624 18.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.0351 T22: 0.0314 REMARK 3 T33: 0.0413 T12: -0.0037 REMARK 3 T13: -0.0004 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.2027 L22: 0.1198 REMARK 3 L33: 0.1060 L12: -0.0954 REMARK 3 L13: 0.1419 L23: -0.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0007 S13: 0.0129 REMARK 3 S21: 0.0011 S22: 0.0203 S23: -0.0107 REMARK 3 S31: -0.0385 S32: 0.0143 S33: 0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MOD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082163. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03906 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 18.4420 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.15600 REMARK 200 R SYM FOR SHELL (I) : 0.15600 REMARK 200 FOR SHELL : 11.71 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1WNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 25%(W/V) POLYETHYLENE REMARK 280 GLYCOL 3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -21.40800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 37.07974 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -42.81600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1301 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1301 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1354 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 991 REMARK 465 GLU A 992 REMARK 465 LEU A 1040 REMARK 465 SER A 1041 REMARK 465 ASN A 1042 REMARK 465 THR A 1043 REMARK 465 PHE A 1044 REMARK 465 GLY A 1045 REMARK 465 ALA A 1046 REMARK 465 ILE A 1047 REMARK 465 SER A 1048 REMARK 465 ALA A 1049 REMARK 465 SER A 1050 REMARK 465 ILE A 1051 REMARK 465 GLY A 1052 REMARK 465 ASP A 1053 REMARK 465 ILE A 1054 REMARK 465 LEU A 1055 REMARK 465 VAL A 1056 REMARK 465 PRO A 1057 REMARK 465 ARG A 1058 REMARK 465 GLY A 1059 REMARK 465 SER A 1060 REMARK 465 GLY A 1061 REMARK 465 GLY A 1062 REMARK 465 SER A 1063 REMARK 465 GLY A 1064 REMARK 465 GLY A 1065 REMARK 465 SER A 1066 REMARK 465 GLY A 1067 REMARK 465 GLY A 1068 REMARK 465 LEU A 1069 REMARK 465 GLU A 1070 REMARK 465 VAL A 1071 REMARK 465 LEU A 1072 REMARK 465 PHE A 1073 REMARK 465 GLN A 1074 REMARK 465 GLY A 1075 REMARK 465 PRO A 1076 REMARK 465 LEU A 1252 REMARK 465 THR A 1253 REMARK 465 LEU A 1283 REMARK 465 LYS A 1284 REMARK 465 GLU A 1285 REMARK 465 LEU A 1286 REMARK 465 LEU A 1287 REMARK 465 GLU A 1288 REMARK 465 HIS A 1289 REMARK 465 HIS A 1290 REMARK 465 HIS A 1291 REMARK 465 HIS A 1292 REMARK 465 HIS A 1293 REMARK 465 HIS A 1294 REMARK 465 MET B 991 REMARK 465 GLU B 992 REMARK 465 LEU B 1040 REMARK 465 SER B 1041 REMARK 465 ASN B 1042 REMARK 465 THR B 1043 REMARK 465 PHE B 1044 REMARK 465 GLY B 1045 REMARK 465 ALA B 1046 REMARK 465 ILE B 1047 REMARK 465 SER B 1048 REMARK 465 ALA B 1049 REMARK 465 SER B 1050 REMARK 465 ILE B 1051 REMARK 465 GLY B 1052 REMARK 465 ASP B 1053 REMARK 465 ILE B 1054 REMARK 465 LEU B 1055 REMARK 465 VAL B 1056 REMARK 465 PRO B 1057 REMARK 465 ARG B 1058 REMARK 465 GLY B 1059 REMARK 465 SER B 1060 REMARK 465 GLY B 1061 REMARK 465 GLY B 1062 REMARK 465 SER B 1063 REMARK 465 GLY B 1064 REMARK 465 GLY B 1065 REMARK 465 SER B 1066 REMARK 465 GLY B 1067 REMARK 465 GLY B 1068 REMARK 465 LEU B 1069 REMARK 465 GLU B 1070 REMARK 465 VAL B 1071 REMARK 465 LEU B 1072 REMARK 465 PHE B 1073 REMARK 465 GLN B 1074 REMARK 465 GLY B 1075 REMARK 465 PRO B 1076 REMARK 465 LEU B 1252 REMARK 465 THR B 1253 REMARK 465 LEU B 1283 REMARK 465 LYS B 1284 REMARK 465 GLU B 1285 REMARK 465 LEU B 1286 REMARK 465 LEU B 1287 REMARK 465 GLU B 1288 REMARK 465 HIS B 1289 REMARK 465 HIS B 1290 REMARK 465 HIS B 1291 REMARK 465 HIS B 1292 REMARK 465 HIS B 1293 REMARK 465 HIS B 1294 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 1279 O HOH A 1347 1.99 REMARK 500 O HOH A 1326 O HOH A 1361 2.00 REMARK 500 O GLU A 1039 O HOH A 1319 2.03 REMARK 500 O HOH B 1346 O HOH B 1355 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 1254 O HOH A 1335 2555 1.60 REMARK 500 N GLN A 1254 O HOH A 1345 2555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 994 -33.48 -161.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 1254 ILE B 1255 -136.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNC RELATED DB: PDB REMARK 900 STRUCTURE OF THE SARS-COV FUSION CORE REMARK 900 RELATED ID: 1WDF RELATED DB: PDB REMARK 900 STRUCTURE OF THE MHV FUSION CORE DBREF 4MOD A 992 1054 UNP K0BRG7 K0BRG7_9BETC 992 1054 DBREF 4MOD A 1055 1076 PDB 4MOD 4MOD 1055 1076 DBREF 4MOD A 1252 1286 UNP K0BRG7 K0BRG7_9BETC 1252 1286 DBREF 4MOD B 992 1054 UNP K0BRG7 K0BRG7_9BETC 992 1054 DBREF 4MOD B 1055 1076 PDB 4MOD 4MOD 1055 1076 DBREF 4MOD B 1252 1286 UNP K0BRG7 K0BRG7_9BETC 1252 1286 SEQADV 4MOD MET A 991 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD LEU A 1287 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD GLU A 1288 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS A 1289 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS A 1290 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS A 1291 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS A 1292 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS A 1293 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS A 1294 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD MET B 991 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD LEU B 1287 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD GLU B 1288 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS B 1289 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS B 1290 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS B 1291 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS B 1292 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS B 1293 UNP K0BRG7 EXPRESSION TAG SEQADV 4MOD HIS B 1294 UNP K0BRG7 EXPRESSION TAG SEQRES 1 A 129 MET GLU ASN GLN LYS LEU ILE ALA ASN LYS PHE ASN GLN SEQRES 2 A 129 ALA LEU GLY ALA MET GLN THR GLY PHE THR THR THR ASN SEQRES 3 A 129 GLU ALA PHE GLN LYS VAL GLN ASP ALA VAL ASN ASN ASN SEQRES 4 A 129 ALA GLN ALA LEU SER LYS LEU ALA SER GLU LEU SER ASN SEQRES 5 A 129 THR PHE GLY ALA ILE SER ALA SER ILE GLY ASP ILE LEU SEQRES 6 A 129 VAL PRO ARG GLY SER GLY GLY SER GLY GLY SER GLY GLY SEQRES 7 A 129 LEU GLU VAL LEU PHE GLN GLY PRO LEU THR GLN ILE ASN SEQRES 8 A 129 THR THR LEU LEU ASP LEU THR TYR GLU MET LEU SER LEU SEQRES 9 A 129 GLN GLN VAL VAL LYS ALA LEU ASN GLU SER TYR ILE ASP SEQRES 10 A 129 LEU LYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 129 MET GLU ASN GLN LYS LEU ILE ALA ASN LYS PHE ASN GLN SEQRES 2 B 129 ALA LEU GLY ALA MET GLN THR GLY PHE THR THR THR ASN SEQRES 3 B 129 GLU ALA PHE GLN LYS VAL GLN ASP ALA VAL ASN ASN ASN SEQRES 4 B 129 ALA GLN ALA LEU SER LYS LEU ALA SER GLU LEU SER ASN SEQRES 5 B 129 THR PHE GLY ALA ILE SER ALA SER ILE GLY ASP ILE LEU SEQRES 6 B 129 VAL PRO ARG GLY SER GLY GLY SER GLY GLY SER GLY GLY SEQRES 7 B 129 LEU GLU VAL LEU PHE GLN GLY PRO LEU THR GLN ILE ASN SEQRES 8 B 129 THR THR LEU LEU ASP LEU THR TYR GLU MET LEU SER LEU SEQRES 9 B 129 GLN GLN VAL VAL LYS ALA LEU ASN GLU SER TYR ILE ASP SEQRES 10 B 129 LEU LYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *129(H2 O) HELIX 1 1 GLN A 994 GLU A 1039 1 46 HELIX 2 2 LEU A 1262 GLU A 1278 1 17 HELIX 3 3 GLN B 994 GLU B 1039 1 46 HELIX 4 4 LEU B 1262 GLU B 1278 1 17 CISPEP 1 GLN A 1254 ILE A 1255 0 11.84 CRYST1 42.816 42.816 75.566 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023356 0.013484 0.000000 0.00000 SCALE2 0.000000 0.026969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013233 0.00000