HEADER OXIDOREDUCTASE 12-SEP-13 4MP3 TITLE STAPHYLOFERRIN B PRECURSOR BIOSYNTHETIC ENZYME SELENOMETHIONINE- TITLE 2 LABELED SBNB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ORNITHINE CYCLODEAMINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: SBNB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SIDEROPHORE, L-DAP SYNTHESIS, ACEGA DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.GRIGG,M.J.KOBYLARZ,D.K.RAI,M.E.P.MURPHY REVDAT 3 15-NOV-17 4MP3 1 REMARK REVDAT 2 09-APR-14 4MP3 1 JRNL REVDAT 1 05-MAR-14 4MP3 0 JRNL AUTH M.J.KOBYLARZ,J.C.GRIGG,S.J.TAKAYAMA,D.K.RAI,D.E.HEINRICHS, JRNL AUTH 2 M.E.MURPHY JRNL TITL SYNTHESIS OF L-2,3-DIAMINOPROPIONIC ACID, A SIDEROPHORE AND JRNL TITL 2 ANTIBIOTIC PRECURSOR. JRNL REF CHEM.BIOL. V. 21 379 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24485762 JRNL DOI 10.1016/J.CHEMBIOL.2013.12.011 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.107 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.70000 REMARK 3 B22 (A**2) : -1.70000 REMARK 3 B33 (A**2) : 3.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.726 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2686 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3637 ; 1.428 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.455 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;39.856 ;25.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;16.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.794 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2032 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 1.301 ; 1.995 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1660 ; 2.210 ; 2.982 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1357 ; 1.646 ; 2.286 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2139 21.5746 28.5915 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.1162 REMARK 3 T33: 0.0873 T12: 0.0103 REMARK 3 T13: 0.0491 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.4536 L22: 2.3411 REMARK 3 L33: 0.2257 L12: -0.2222 REMARK 3 L13: 0.1375 L23: 0.5673 REMARK 3 S TENSOR REMARK 3 S11: -0.0361 S12: -0.0358 S13: -0.0662 REMARK 3 S21: -0.2717 S22: 0.0475 S23: 0.0569 REMARK 3 S31: -0.1005 S32: 0.0153 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5960 18.0562 42.9889 REMARK 3 T TENSOR REMARK 3 T11: 0.0756 T22: 0.0448 REMARK 3 T33: 0.6117 T12: -0.0462 REMARK 3 T13: -0.0078 T23: 0.0906 REMARK 3 L TENSOR REMARK 3 L11: 1.4378 L22: 1.1100 REMARK 3 L33: 2.2371 L12: -1.1269 REMARK 3 L13: -0.7820 L23: 0.2111 REMARK 3 S TENSOR REMARK 3 S11: -0.1165 S12: 0.0269 S13: -0.3718 REMARK 3 S21: 0.0467 S22: -0.0475 S23: 0.0337 REMARK 3 S31: 0.3260 S32: -0.1155 S33: 0.1639 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0905 11.1258 33.6263 REMARK 3 T TENSOR REMARK 3 T11: 0.1598 T22: 0.1123 REMARK 3 T33: 0.1300 T12: -0.0098 REMARK 3 T13: 0.0205 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1303 L22: 1.7244 REMARK 3 L33: 0.3273 L12: 0.4205 REMARK 3 L13: -0.0214 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: -0.0456 S13: 0.0263 REMARK 3 S21: -0.0333 S22: -0.1503 S23: 0.0690 REMARK 3 S31: 0.0145 S32: -0.0097 S33: 0.0850 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7565 -1.8503 37.6799 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1371 REMARK 3 T33: 0.1085 T12: -0.0275 REMARK 3 T13: -0.0130 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 1.7723 L22: 1.7272 REMARK 3 L33: 0.3815 L12: -0.1787 REMARK 3 L13: -0.7659 L23: -0.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.1166 S12: -0.2178 S13: -0.1624 REMARK 3 S21: 0.0110 S22: -0.1688 S23: -0.0060 REMARK 3 S31: -0.0391 S32: 0.0633 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 43.3934 -2.2389 36.4024 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.0358 REMARK 3 T33: 0.5348 T12: -0.0186 REMARK 3 T13: -0.2421 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 4.1691 L22: 7.3484 REMARK 3 L33: 6.6137 L12: -5.3893 REMARK 3 L13: 2.6475 L23: -2.1673 REMARK 3 S TENSOR REMARK 3 S11: -0.1513 S12: 0.0598 S13: 0.3641 REMARK 3 S21: 0.2966 S22: -0.1196 S23: -0.6518 REMARK 3 S31: -0.3476 S32: -0.2558 S33: 0.2709 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0016 13.5746 26.2848 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1050 REMARK 3 T33: 0.1328 T12: 0.0142 REMARK 3 T13: 0.0566 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.1826 L22: 1.4810 REMARK 3 L33: 0.3155 L12: 0.1845 REMARK 3 L13: 0.1070 L23: 0.4698 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.0649 S13: -0.0415 REMARK 3 S21: -0.2867 S22: -0.0599 S23: -0.2831 REMARK 3 S31: -0.0665 S32: 0.0248 S33: 0.0183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4MP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97649 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.9650 DEG. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.106 REMARK 200 RESOLUTION RANGE LOW (A) : 38.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 0.2 M LISO4, 25% PEG REMARK 280 3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.81650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.44350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.44350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.40825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.44350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.44350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.22475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.44350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.44350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.40825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.44350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.44350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 118.22475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.81650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 62.88700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 62.88700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.81650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 51 REMARK 465 PRO A 52 REMARK 465 GLU A 53 REMARK 465 ASN A 54 REMARK 465 GLY A 55 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 107 11.39 58.98 REMARK 500 ILE A 237 -55.08 75.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M54 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH N-(1-AMINO-1-CARBOXYL-2-ETHYL)- REMARK 900 GLUTAMIC ACID AND NADH REMARK 900 RELATED ID: 4MP6 RELATED DB: PDB REMARK 900 RELATED ID: 4MP8 RELATED DB: PDB REMARK 900 RELATED ID: 4MPD RELATED DB: PDB DBREF 4MP3 A 1 336 UNP Q8NYS7 Q8NYS7_STAAW 1 336 SEQADV 4MP3 GLY A -2 UNP Q8NYS7 EXPRESSION TAG SEQADV 4MP3 SER A -1 UNP Q8NYS7 EXPRESSION TAG SEQADV 4MP3 HIS A 0 UNP Q8NYS7 EXPRESSION TAG SEQRES 1 A 339 GLY SER HIS MET ASN ARG GLU MSE LEU TYR LEU ASN ARG SEQRES 2 A 339 SER ASP ILE GLU GLN ALA GLY GLY ASN HIS SER GLN VAL SEQRES 3 A 339 TYR VAL ASP ALA LEU THR GLU ALA LEU THR ALA HIS ALA SEQRES 4 A 339 HIS ASN ASP PHE VAL GLN PRO LEU LYS PRO TYR LEU ARG SEQRES 5 A 339 GLN ASP PRO GLU ASN GLY HIS ILE ALA ASP ARG ILE ILE SEQRES 6 A 339 ALA MSE PRO SER HIS ILE GLY GLY GLU HIS ALA ILE SER SEQRES 7 A 339 GLY ILE LYS TRP ILE GLY SER LYS HIS ASP ASN PRO SER SEQRES 8 A 339 LYS ARG ASN MSE GLU ARG ALA SER GLY VAL ILE ILE LEU SEQRES 9 A 339 ASN ASP PRO GLU THR ASN TYR PRO ILE ALA VAL MSE GLU SEQRES 10 A 339 ALA SER LEU ILE SER SER MSE ARG THR ALA ALA VAL SER SEQRES 11 A 339 VAL ILE ALA ALA LYS HIS LEU ALA LYS LYS GLY PHE LYS SEQRES 12 A 339 ASP LEU THR ILE ILE GLY CYS GLY LEU ILE GLY ASP LYS SEQRES 13 A 339 GLN LEU GLN SER MSE LEU GLU GLN PHE ASP HIS ILE GLU SEQRES 14 A 339 ARG VAL PHE VAL TYR ASP GLN PHE SER GLU ALA CYS ALA SEQRES 15 A 339 ARG PHE VAL ASP ARG TRP GLN GLN GLN ARG PRO GLU ILE SEQRES 16 A 339 ASN PHE ILE ALA THR GLU ASN ALA LYS GLU ALA VAL SER SEQRES 17 A 339 ASN GLY GLU VAL VAL ILE THR CYS THR VAL THR ASP GLN SEQRES 18 A 339 PRO TYR ILE GLU TYR ASP TRP LEU GLN LYS GLY ALA PHE SEQRES 19 A 339 ILE SER ASN ILE SER ILE MSE ASP VAL HIS LYS GLU VAL SEQRES 20 A 339 PHE ILE LYS ALA ASP LYS VAL VAL VAL ASP ASP TRP SER SEQRES 21 A 339 GLN CYS ASN ARG GLU LYS LYS THR ILE ASN GLN LEU VAL SEQRES 22 A 339 LEU GLU GLY LYS PHE SER LYS GLU ALA LEU HIS ALA GLU SEQRES 23 A 339 LEU GLY GLN LEU VAL THR GLY ASP ILE PRO GLY ARG GLU SEQRES 24 A 339 ASP ASP ASP GLU ILE ILE LEU LEU ASN PRO MSE GLY MSE SEQRES 25 A 339 ALA ILE GLU ASP ILE SER SER ALA TYR PHE ILE TYR GLN SEQRES 26 A 339 GLN ALA GLN GLN GLN ASN ILE GLY THR THR LEU ASN LEU SEQRES 27 A 339 TYR MODRES 4MP3 MSE A 5 MET SELENOMETHIONINE MODRES 4MP3 MSE A 64 MET SELENOMETHIONINE MODRES 4MP3 MSE A 92 MET SELENOMETHIONINE MODRES 4MP3 MSE A 113 MET SELENOMETHIONINE MODRES 4MP3 MSE A 121 MET SELENOMETHIONINE MODRES 4MP3 MSE A 158 MET SELENOMETHIONINE MODRES 4MP3 MSE A 238 MET SELENOMETHIONINE MODRES 4MP3 MSE A 307 MET SELENOMETHIONINE MODRES 4MP3 MSE A 309 MET SELENOMETHIONINE HET MSE A 5 8 HET MSE A 64 8 HET MSE A 92 8 HET MSE A 113 8 HET MSE A 121 8 HET MSE A 158 8 HET MSE A 238 8 HET MSE A 307 8 HET MSE A 309 8 HET SO4 A 401 5 HET GOL A 402 6 HET SO4 A 403 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 3 GOL C3 H8 O3 FORMUL 5 HOH *111(H2 O) HELIX 1 1 ASN A 9 ALA A 16 1 8 HELIX 2 2 HIS A 20 HIS A 37 1 18 HELIX 3 3 ASP A 85 ASN A 91 1 7 HELIX 4 4 ALA A 115 ALA A 135 1 21 HELIX 5 5 GLY A 148 PHE A 162 1 15 HELIX 6 6 PHE A 174 ARG A 189 1 16 HELIX 7 7 ASN A 199 GLY A 207 1 9 HELIX 8 8 GLU A 222 LEU A 226 5 5 HELIX 9 9 HIS A 241 ALA A 248 1 8 HELIX 10 10 ASP A 255 ASN A 260 1 6 HELIX 11 11 LYS A 264 GLU A 272 1 9 HELIX 12 12 LEU A 284 THR A 289 1 6 HELIX 13 13 MSE A 309 GLN A 327 1 19 SHEET 1 A 3 PHE A 40 VAL A 41 0 SHEET 2 A 3 ARG A 60 ILE A 68 -1 O HIS A 67 N VAL A 41 SHEET 3 A 3 TYR A 47 LEU A 48 -1 N LEU A 48 O ILE A 61 SHEET 1 B 7 PHE A 40 VAL A 41 0 SHEET 2 B 7 ARG A 60 ILE A 68 -1 O HIS A 67 N VAL A 41 SHEET 3 B 7 ILE A 74 SER A 82 -1 O ILE A 80 N ILE A 62 SHEET 4 B 7 ALA A 95 ASN A 102 -1 O SER A 96 N GLY A 81 SHEET 5 B 7 PRO A 109 GLU A 114 -1 O ILE A 110 N LEU A 101 SHEET 6 B 7 GLU A 4 LEU A 8 1 N LEU A 8 O VAL A 112 SHEET 7 B 7 THR A 331 ASN A 334 -1 O LEU A 333 N MSE A 5 SHEET 1 C 8 ASN A 193 ALA A 196 0 SHEET 2 C 8 ARG A 167 TYR A 171 1 N VAL A 168 O ILE A 195 SHEET 3 C 8 ASP A 141 ILE A 145 1 N LEU A 142 O PHE A 169 SHEET 4 C 8 VAL A 209 THR A 212 1 O VAL A 209 N THR A 143 SHEET 5 C 8 PHE A 231 SER A 233 1 O SER A 233 N VAL A 210 SHEET 6 C 8 ILE A 302 ASN A 305 1 O LEU A 304 N ILE A 232 SHEET 7 C 8 LYS A 250 VAL A 253 1 N VAL A 252 O ASN A 305 SHEET 8 C 8 ALA A 282 GLU A 283 1 O ALA A 282 N VAL A 253 LINK C GLU A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N LEU A 6 1555 1555 1.33 LINK C ALA A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N PRO A 65 1555 1555 1.35 LINK C ASN A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLU A 93 1555 1555 1.33 LINK C VAL A 112 N MSE A 113 1555 1555 1.33 LINK C MSE A 113 N GLU A 114 1555 1555 1.34 LINK C SER A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N ARG A 122 1555 1555 1.33 LINK C SER A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N LEU A 159 1555 1555 1.33 LINK C ILE A 237 N MSE A 238 1555 1555 1.32 LINK C MSE A 238 N ASP A 239 1555 1555 1.33 LINK C PRO A 306 N MSE A 307 1555 1555 1.33 LINK C MSE A 307 N GLY A 308 1555 1555 1.33 LINK C GLY A 308 N MSE A 309 1555 1555 1.34 LINK C MSE A 309 N ALA A 310 1555 1555 1.34 CISPEP 1 GLU A 262 LYS A 263 0 -7.59 SITE 1 AC1 6 LYS A 45 MSE A 64 LYS A 78 ARG A 122 SITE 2 AC1 6 GLY A 308 HOH A 590 SITE 1 AC2 4 ARG A 94 GLY A 148 LEU A 149 ILE A 150 SITE 1 AC3 5 PRO A 219 HIS A 241 LYS A 242 HOH A 544 SITE 2 AC3 5 HOH A 589 CRYST1 62.887 62.887 157.633 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006344 0.00000