HEADER OXIDOREDUCTASE 12-SEP-13 4MP8 TITLE STAPHYLOFERRIN B PRECURSOR BIOSYNTHETIC ENZYME SBNB BOUND TO MALONATE TITLE 2 AND NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ORNITHINE CYCLODEAMINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: NEWMAN; SOURCE 5 GENE: SBNB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SIDEROPHORE, L-DAP SYNTHESIS, ACEGA DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.GRIGG,M.J.KOBYLARZ,D.K.RAI,M.E.P.MURPHY REVDAT 4 28-FEB-24 4MP8 1 REMARK SEQADV REVDAT 3 15-NOV-17 4MP8 1 REMARK REVDAT 2 09-APR-14 4MP8 1 JRNL REVDAT 1 05-MAR-14 4MP8 0 JRNL AUTH M.J.KOBYLARZ,J.C.GRIGG,S.J.TAKAYAMA,D.K.RAI,D.E.HEINRICHS, JRNL AUTH 2 M.E.MURPHY JRNL TITL SYNTHESIS OF L-2,3-DIAMINOPROPIONIC ACID, A SIDEROPHORE AND JRNL TITL 2 ANTIBIOTIC PRECURSOR. JRNL REF CHEM.BIOL. V. 21 379 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24485762 JRNL DOI 10.1016/J.CHEMBIOL.2013.12.011 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1385 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1690 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 1.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.381 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2789 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3790 ; 1.525 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 6.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;38.959 ;25.290 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;15.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.926 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 417 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2138 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0870 4.4694 -11.2374 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.1344 REMARK 3 T33: 0.1145 T12: -0.0041 REMARK 3 T13: 0.0057 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.4776 L22: 0.4941 REMARK 3 L33: 0.2927 L12: -0.1615 REMARK 3 L13: 0.2300 L23: 0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.1406 S13: 0.1664 REMARK 3 S21: -0.0047 S22: -0.0296 S23: 0.0054 REMARK 3 S31: 0.0355 S32: 0.0154 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -12.1355 -1.0487 2.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.1575 REMARK 3 T33: 0.1454 T12: 0.0345 REMARK 3 T13: 0.0024 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.5476 L22: 0.8050 REMARK 3 L33: 0.8573 L12: 0.2410 REMARK 3 L13: -0.3430 L23: 0.4802 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0302 S13: 0.0626 REMARK 3 S21: -0.0525 S22: -0.0134 S23: 0.1509 REMARK 3 S31: 0.0026 S32: -0.0101 S33: 0.0110 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): -22.4104 12.3667 -5.9257 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.1536 REMARK 3 T33: 0.1592 T12: 0.0144 REMARK 3 T13: -0.0371 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.0174 L22: 0.4434 REMARK 3 L33: 0.1493 L12: -0.8855 REMARK 3 L13: -0.0879 L23: -0.0250 REMARK 3 S TENSOR REMARK 3 S11: -0.1462 S12: 0.0330 S13: 0.2717 REMARK 3 S21: 0.0582 S22: 0.0652 S23: -0.1527 REMARK 3 S31: 0.0309 S32: -0.0406 S33: 0.0810 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): -32.7084 10.3958 -1.9653 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.1348 REMARK 3 T33: 0.1457 T12: 0.0254 REMARK 3 T13: -0.0111 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.1408 L22: 0.7294 REMARK 3 L33: 0.0073 L12: -0.8126 REMARK 3 L13: -0.0077 L23: 0.0173 REMARK 3 S TENSOR REMARK 3 S11: -0.1761 S12: -0.0927 S13: 0.0009 REMARK 3 S21: 0.1122 S22: 0.1425 S23: 0.0579 REMARK 3 S31: -0.0040 S32: -0.0039 S33: 0.0335 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): -32.2500 -11.2937 -2.7172 REMARK 3 T TENSOR REMARK 3 T11: 0.4703 T22: 0.1743 REMARK 3 T33: 1.1818 T12: 0.1441 REMARK 3 T13: 0.4619 T23: 0.4217 REMARK 3 L TENSOR REMARK 3 L11: 6.7988 L22: 9.5889 REMARK 3 L33: 4.9766 L12: -4.0001 REMARK 3 L13: -1.5522 L23: 4.3034 REMARK 3 S TENSOR REMARK 3 S11: -1.4513 S12: -0.9958 S13: -2.6182 REMARK 3 S21: 0.6258 S22: 0.6895 S23: 0.7720 REMARK 3 S31: -0.4614 S32: 0.5632 S33: 0.7618 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3467 2.4590 -13.1541 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.1657 REMARK 3 T33: 0.1285 T12: 0.0046 REMARK 3 T13: -0.0064 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 1.5541 L22: 0.2079 REMARK 3 L33: 0.1011 L12: -0.3883 REMARK 3 L13: 0.0504 L23: 0.0634 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: 0.2049 S13: -0.1757 REMARK 3 S21: -0.0393 S22: -0.0406 S23: 0.0196 REMARK 3 S31: -0.0232 S32: -0.0059 S33: 0.0452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4MP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL; ASYMMETRIC CUT REMARK 200 4.9650 DEG. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27690 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.84350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.20100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.20100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.42175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.20100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.20100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.26525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.20100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.20100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.42175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.20100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.20100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 118.26525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.84350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 270 O GLU A 272 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 213 37.31 -142.61 REMARK 500 ILE A 237 -52.29 70.86 REMARK 500 ASN A 260 49.19 -82.14 REMARK 500 LYS A 263 -3.22 88.98 REMARK 500 GLU A 272 -177.89 -67.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M54 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH N-(1-AMINO-1-CARBOXYL-2-ETHYL)- REMARK 900 GLUTAMIC ACID AND NADH REMARK 900 RELATED ID: 4MP3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN APO SELENOMETHIONINE REMARK 900 RELATED ID: 4MP6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CITRATE AND NAD+ REMARK 900 RELATED ID: 4MPD RELATED DB: PDB DBREF 4MP8 A 1 336 UNP Q8NYS7 Q8NYS7_STAAW 1 336 SEQADV 4MP8 GLY A -2 UNP Q8NYS7 EXPRESSION TAG SEQADV 4MP8 SER A -1 UNP Q8NYS7 EXPRESSION TAG SEQADV 4MP8 HIS A 0 UNP Q8NYS7 EXPRESSION TAG SEQRES 1 A 339 GLY SER HIS MET ASN ARG GLU MET LEU TYR LEU ASN ARG SEQRES 2 A 339 SER ASP ILE GLU GLN ALA GLY GLY ASN HIS SER GLN VAL SEQRES 3 A 339 TYR VAL ASP ALA LEU THR GLU ALA LEU THR ALA HIS ALA SEQRES 4 A 339 HIS ASN ASP PHE VAL GLN PRO LEU LYS PRO TYR LEU ARG SEQRES 5 A 339 GLN ASP PRO GLU ASN GLY HIS ILE ALA ASP ARG ILE ILE SEQRES 6 A 339 ALA MET PRO SER HIS ILE GLY GLY GLU HIS ALA ILE SER SEQRES 7 A 339 GLY ILE LYS TRP ILE GLY SER LYS HIS ASP ASN PRO SER SEQRES 8 A 339 LYS ARG ASN MET GLU ARG ALA SER GLY VAL ILE ILE LEU SEQRES 9 A 339 ASN ASP PRO GLU THR ASN TYR PRO ILE ALA VAL MET GLU SEQRES 10 A 339 ALA SER LEU ILE SER SER MET ARG THR ALA ALA VAL SER SEQRES 11 A 339 VAL ILE ALA ALA LYS HIS LEU ALA LYS LYS GLY PHE LYS SEQRES 12 A 339 ASP LEU THR ILE ILE GLY CYS GLY LEU ILE GLY ASP LYS SEQRES 13 A 339 GLN LEU GLN SER MET LEU GLU GLN PHE ASP HIS ILE GLU SEQRES 14 A 339 ARG VAL PHE VAL TYR ASP GLN PHE SER GLU ALA CYS ALA SEQRES 15 A 339 ARG PHE VAL ASP ARG TRP GLN GLN GLN ARG PRO GLU ILE SEQRES 16 A 339 ASN PHE ILE ALA THR GLU ASN ALA LYS GLU ALA VAL SER SEQRES 17 A 339 ASN GLY GLU VAL VAL ILE THR CYS THR VAL THR ASP GLN SEQRES 18 A 339 PRO TYR ILE GLU TYR ASP TRP LEU GLN LYS GLY ALA PHE SEQRES 19 A 339 ILE SER ASN ILE SER ILE MET ASP VAL HIS LYS GLU VAL SEQRES 20 A 339 PHE ILE LYS ALA ASP LYS VAL VAL VAL ASP ASP TRP SER SEQRES 21 A 339 GLN CYS ASN ARG GLU LYS LYS THR ILE ASN GLN LEU VAL SEQRES 22 A 339 LEU GLU GLY LYS PHE SER LYS GLU ALA LEU HIS ALA GLU SEQRES 23 A 339 LEU GLY GLN LEU VAL THR GLY ASP ILE PRO GLY ARG GLU SEQRES 24 A 339 ASP ASP ASP GLU ILE ILE LEU LEU ASN PRO MET GLY MET SEQRES 25 A 339 ALA ILE GLU ASP ILE SER SER ALA TYR PHE ILE TYR GLN SEQRES 26 A 339 GLN ALA GLN GLN GLN ASN ILE GLY THR THR LEU ASN LEU SEQRES 27 A 339 TYR HET NAD A 400 44 HET MLI A 401 7 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM MLI MALONATE ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 HOH *141(H2 O) HELIX 1 1 ASN A 9 ALA A 16 1 8 HELIX 2 2 SER A 21 HIS A 37 1 17 HELIX 3 3 ASP A 85 ASN A 91 1 7 HELIX 4 4 ALA A 115 ALA A 135 1 21 HELIX 5 5 GLY A 148 PHE A 162 1 15 HELIX 6 6 PHE A 174 ARG A 189 1 16 HELIX 7 7 ASN A 199 ASN A 206 1 8 HELIX 8 8 GLU A 222 LEU A 226 5 5 HELIX 9 9 HIS A 241 ALA A 248 1 8 HELIX 10 10 ASP A 255 ASN A 260 1 6 HELIX 11 11 LYS A 264 GLU A 272 1 9 HELIX 12 12 LEU A 284 THR A 289 1 6 HELIX 13 13 MET A 309 GLN A 327 1 19 SHEET 1 A 3 PHE A 40 VAL A 41 0 SHEET 2 A 3 ARG A 60 ILE A 68 -1 O HIS A 67 N VAL A 41 SHEET 3 A 3 TYR A 47 LEU A 48 -1 N LEU A 48 O ILE A 61 SHEET 1 B 7 PHE A 40 VAL A 41 0 SHEET 2 B 7 ARG A 60 ILE A 68 -1 O HIS A 67 N VAL A 41 SHEET 3 B 7 ILE A 74 SER A 82 -1 O ILE A 74 N ILE A 68 SHEET 4 B 7 ALA A 95 ASN A 102 -1 O ASN A 102 N SER A 75 SHEET 5 B 7 PRO A 109 GLU A 114 -1 O MET A 113 N ILE A 99 SHEET 6 B 7 GLU A 4 LEU A 8 1 N LEU A 8 O GLU A 114 SHEET 7 B 7 THR A 331 ASN A 334 -1 O THR A 331 N TYR A 7 SHEET 1 C 8 ASN A 193 ALA A 196 0 SHEET 2 C 8 ARG A 167 TYR A 171 1 N VAL A 168 O ILE A 195 SHEET 3 C 8 ASP A 141 ILE A 145 1 N ILE A 144 O PHE A 169 SHEET 4 C 8 VAL A 209 THR A 212 1 O VAL A 209 N THR A 143 SHEET 5 C 8 PHE A 231 SER A 233 1 O SER A 233 N VAL A 210 SHEET 6 C 8 ILE A 302 ASN A 305 1 O LEU A 304 N ILE A 232 SHEET 7 C 8 LYS A 250 VAL A 253 1 N VAL A 252 O LEU A 303 SHEET 8 C 8 ALA A 282 GLU A 283 1 O ALA A 282 N VAL A 253 SITE 1 AC1 27 HIS A 37 ARG A 60 ARG A 94 ARG A 122 SITE 2 AC1 27 THR A 123 GLY A 148 LEU A 149 ILE A 150 SITE 3 AC1 27 ASP A 172 GLN A 173 CYS A 213 THR A 214 SITE 4 AC1 27 VAL A 215 ILE A 235 PRO A 306 MET A 307 SITE 5 AC1 27 GLY A 308 MLI A 401 HOH A 506 HOH A 529 SITE 6 AC1 27 HOH A 534 HOH A 540 HOH A 546 HOH A 555 SITE 7 AC1 27 HOH A 556 HOH A 613 HOH A 623 SITE 1 AC2 7 ARG A 60 ARG A 94 NAD A 400 HOH A 525 SITE 2 AC2 7 HOH A 552 HOH A 555 HOH A 621 CRYST1 62.402 62.402 157.687 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006342 0.00000