data_4MPD # _entry.id 4MPD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MPD pdb_00004mpd 10.2210/pdb4mpd/pdb RCSB RCSB082198 ? ? WWPDB D_1000082198 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-05 2 'Structure model' 1 1 2014-04-09 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4MPD _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-09-12 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4M54 'The same protein complexed with N-(1-amino-1-carboxyl-2-ethyl)-glutamic acid and NADH' unspecified PDB 4MP3 'The same protein apo selenomethionine' unspecified PDB 4MP6 'The same protein complexed with citrate and NAD+' unspecified PDB 4MP8 'The same protein complexed with malonate and NAD+' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kobylarz, M.J.' 1 'Murphy, M.E.P.' 2 # _citation.id primary _citation.title 'Synthesis of L-2,3-diaminopropionic Acid, a siderophore and antibiotic precursor.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 21 _citation.page_first 379 _citation.page_last 388 _citation.year 2014 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24485762 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2013.12.011 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kobylarz, M.J.' 1 ? primary 'Grigg, J.C.' 2 ? primary 'Takayama, S.J.' 3 ? primary 'Rai, D.K.' 4 ? primary 'Heinrichs, D.E.' 5 ? primary 'Murphy, M.E.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative ornithine cyclodeaminase' 38072.945 1 ? ? ? ? 2 non-polymer syn 'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' 663.425 1 ? ? ? ? 3 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 1 ? ? ? ? 4 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGI KWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQS MLEQFDHIERVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISI MDVHKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDEIILLNPMGMAIEDISSA YFIYQQAQQQNIGTTLNLY ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGI KWIGSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQS MLEQFDHIERVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISI MDVHKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDEIILLNPMGMAIEDISSA YFIYQQAQQQNIGTTLNLY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' NAJ 3 '2-OXOGLUTARIC ACID' AKG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASN n 1 6 ARG n 1 7 GLU n 1 8 MET n 1 9 LEU n 1 10 TYR n 1 11 LEU n 1 12 ASN n 1 13 ARG n 1 14 SER n 1 15 ASP n 1 16 ILE n 1 17 GLU n 1 18 GLN n 1 19 ALA n 1 20 GLY n 1 21 GLY n 1 22 ASN n 1 23 HIS n 1 24 SER n 1 25 GLN n 1 26 VAL n 1 27 TYR n 1 28 VAL n 1 29 ASP n 1 30 ALA n 1 31 LEU n 1 32 THR n 1 33 GLU n 1 34 ALA n 1 35 LEU n 1 36 THR n 1 37 ALA n 1 38 HIS n 1 39 ALA n 1 40 HIS n 1 41 ASN n 1 42 ASP n 1 43 PHE n 1 44 VAL n 1 45 GLN n 1 46 PRO n 1 47 LEU n 1 48 LYS n 1 49 PRO n 1 50 TYR n 1 51 LEU n 1 52 ARG n 1 53 GLN n 1 54 ASP n 1 55 PRO n 1 56 GLU n 1 57 ASN n 1 58 GLY n 1 59 HIS n 1 60 ILE n 1 61 ALA n 1 62 ASP n 1 63 ARG n 1 64 ILE n 1 65 ILE n 1 66 ALA n 1 67 MET n 1 68 PRO n 1 69 SER n 1 70 HIS n 1 71 ILE n 1 72 GLY n 1 73 GLY n 1 74 GLU n 1 75 HIS n 1 76 ALA n 1 77 ILE n 1 78 SER n 1 79 GLY n 1 80 ILE n 1 81 LYS n 1 82 TRP n 1 83 ILE n 1 84 GLY n 1 85 SER n 1 86 LYS n 1 87 HIS n 1 88 ASP n 1 89 ASN n 1 90 PRO n 1 91 SER n 1 92 LYS n 1 93 ARG n 1 94 ASN n 1 95 MET n 1 96 GLU n 1 97 ARG n 1 98 ALA n 1 99 SER n 1 100 GLY n 1 101 VAL n 1 102 ILE n 1 103 ILE n 1 104 LEU n 1 105 ASN n 1 106 ASP n 1 107 PRO n 1 108 GLU n 1 109 THR n 1 110 ASN n 1 111 TYR n 1 112 PRO n 1 113 ILE n 1 114 ALA n 1 115 VAL n 1 116 MET n 1 117 GLU n 1 118 ALA n 1 119 SER n 1 120 LEU n 1 121 ILE n 1 122 SER n 1 123 SER n 1 124 MET n 1 125 ARG n 1 126 THR n 1 127 ALA n 1 128 ALA n 1 129 VAL n 1 130 SER n 1 131 VAL n 1 132 ILE n 1 133 ALA n 1 134 ALA n 1 135 LYS n 1 136 HIS n 1 137 LEU n 1 138 ALA n 1 139 LYS n 1 140 LYS n 1 141 GLY n 1 142 PHE n 1 143 LYS n 1 144 ASP n 1 145 LEU n 1 146 THR n 1 147 ILE n 1 148 ILE n 1 149 GLY n 1 150 CYS n 1 151 GLY n 1 152 LEU n 1 153 ILE n 1 154 GLY n 1 155 ASP n 1 156 LYS n 1 157 GLN n 1 158 LEU n 1 159 GLN n 1 160 SER n 1 161 MET n 1 162 LEU n 1 163 GLU n 1 164 GLN n 1 165 PHE n 1 166 ASP n 1 167 HIS n 1 168 ILE n 1 169 GLU n 1 170 ARG n 1 171 VAL n 1 172 PHE n 1 173 VAL n 1 174 TYR n 1 175 ASP n 1 176 GLN n 1 177 PHE n 1 178 SER n 1 179 GLU n 1 180 ALA n 1 181 CYS n 1 182 ALA n 1 183 ARG n 1 184 PHE n 1 185 VAL n 1 186 ASP n 1 187 ARG n 1 188 TRP n 1 189 GLN n 1 190 GLN n 1 191 GLN n 1 192 ARG n 1 193 PRO n 1 194 GLU n 1 195 ILE n 1 196 ASN n 1 197 PHE n 1 198 ILE n 1 199 ALA n 1 200 THR n 1 201 GLU n 1 202 ASN n 1 203 ALA n 1 204 LYS n 1 205 GLU n 1 206 ALA n 1 207 VAL n 1 208 SER n 1 209 ASN n 1 210 GLY n 1 211 GLU n 1 212 VAL n 1 213 VAL n 1 214 ILE n 1 215 THR n 1 216 CYS n 1 217 THR n 1 218 VAL n 1 219 THR n 1 220 ASP n 1 221 GLN n 1 222 PRO n 1 223 TYR n 1 224 ILE n 1 225 GLU n 1 226 TYR n 1 227 ASP n 1 228 TRP n 1 229 LEU n 1 230 GLN n 1 231 LYS n 1 232 GLY n 1 233 ALA n 1 234 PHE n 1 235 ILE n 1 236 SER n 1 237 ASN n 1 238 ILE n 1 239 SER n 1 240 ILE n 1 241 MET n 1 242 ASP n 1 243 VAL n 1 244 HIS n 1 245 LYS n 1 246 GLU n 1 247 VAL n 1 248 PHE n 1 249 ILE n 1 250 LYS n 1 251 ALA n 1 252 ASP n 1 253 LYS n 1 254 VAL n 1 255 VAL n 1 256 VAL n 1 257 ASP n 1 258 ASP n 1 259 TRP n 1 260 SER n 1 261 GLN n 1 262 CYS n 1 263 ASN n 1 264 ARG n 1 265 GLU n 1 266 LYS n 1 267 LYS n 1 268 THR n 1 269 ILE n 1 270 ASN n 1 271 GLN n 1 272 LEU n 1 273 VAL n 1 274 LEU n 1 275 GLU n 1 276 GLY n 1 277 LYS n 1 278 PHE n 1 279 SER n 1 280 LYS n 1 281 GLU n 1 282 ALA n 1 283 LEU n 1 284 HIS n 1 285 ALA n 1 286 GLU n 1 287 LEU n 1 288 GLY n 1 289 GLN n 1 290 LEU n 1 291 VAL n 1 292 THR n 1 293 GLY n 1 294 ASP n 1 295 ILE n 1 296 PRO n 1 297 GLY n 1 298 ARG n 1 299 GLU n 1 300 ASP n 1 301 ASP n 1 302 ASP n 1 303 GLU n 1 304 ILE n 1 305 ILE n 1 306 LEU n 1 307 LEU n 1 308 ASN n 1 309 PRO n 1 310 MET n 1 311 GLY n 1 312 MET n 1 313 ALA n 1 314 ILE n 1 315 GLU n 1 316 ASP n 1 317 ILE n 1 318 SER n 1 319 SER n 1 320 ALA n 1 321 TYR n 1 322 PHE n 1 323 ILE n 1 324 TYR n 1 325 GLN n 1 326 GLN n 1 327 ALA n 1 328 GLN n 1 329 GLN n 1 330 GLN n 1 331 ASN n 1 332 ILE n 1 333 GLY n 1 334 THR n 1 335 THR n 1 336 LEU n 1 337 ASN n 1 338 LEU n 1 339 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene sbnB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain NEWMAN _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 196620 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAJ non-polymer . 'NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)' ? 'C21 H27 N7 O14 P2' 663.425 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 ASN 5 2 ? ? ? A . n A 1 6 ARG 6 3 3 ARG ARG A . n A 1 7 GLU 7 4 4 GLU GLU A . n A 1 8 MET 8 5 5 MET MET A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 TYR 10 7 7 TYR TYR A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 ASN 12 9 9 ASN ASN A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 SER 14 11 11 SER SER A . n A 1 15 ASP 15 12 12 ASP ASP A . n A 1 16 ILE 16 13 13 ILE ILE A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 GLN 18 15 15 GLN GLN A . n A 1 19 ALA 19 16 16 ALA ALA A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 ASN 22 19 19 ASN ASN A . n A 1 23 HIS 23 20 20 HIS HIS A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 GLN 25 22 22 GLN GLN A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 TYR 27 24 24 TYR TYR A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 ASP 29 26 26 ASP ASP A . n A 1 30 ALA 30 27 27 ALA ALA A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 THR 32 29 29 THR THR A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 THR 36 33 33 THR THR A . n A 1 37 ALA 37 34 34 ALA ALA A . n A 1 38 HIS 38 35 35 HIS HIS A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 HIS 40 37 37 HIS HIS A . n A 1 41 ASN 41 38 38 ASN ASN A . n A 1 42 ASP 42 39 39 ASP ASP A . n A 1 43 PHE 43 40 40 PHE PHE A . n A 1 44 VAL 44 41 41 VAL VAL A . n A 1 45 GLN 45 42 42 GLN GLN A . n A 1 46 PRO 46 43 43 PRO PRO A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 LYS 48 45 45 LYS LYS A . n A 1 49 PRO 49 46 46 PRO PRO A . n A 1 50 TYR 50 47 47 TYR TYR A . n A 1 51 LEU 51 48 48 LEU LEU A . n A 1 52 ARG 52 49 49 ARG ARG A . n A 1 53 GLN 53 50 50 GLN GLN A . n A 1 54 ASP 54 51 ? ? ? A . n A 1 55 PRO 55 52 ? ? ? A . n A 1 56 GLU 56 53 ? ? ? A . n A 1 57 ASN 57 54 ? ? ? A . n A 1 58 GLY 58 55 ? ? ? A . n A 1 59 HIS 59 56 ? ? ? A . n A 1 60 ILE 60 57 ? ? ? A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 ARG 63 60 60 ARG ARG A . n A 1 64 ILE 64 61 61 ILE ILE A . n A 1 65 ILE 65 62 62 ILE ILE A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 MET 67 64 64 MET MET A . n A 1 68 PRO 68 65 65 PRO PRO A . n A 1 69 SER 69 66 66 SER SER A . n A 1 70 HIS 70 67 67 HIS HIS A . n A 1 71 ILE 71 68 68 ILE ILE A . n A 1 72 GLY 72 69 ? ? ? A . n A 1 73 GLY 73 70 ? ? ? A . n A 1 74 GLU 74 71 ? ? ? A . n A 1 75 HIS 75 72 ? ? ? A . n A 1 76 ALA 76 73 ? ? ? A . n A 1 77 ILE 77 74 74 ILE ILE A . n A 1 78 SER 78 75 75 SER SER A . n A 1 79 GLY 79 76 76 GLY GLY A . n A 1 80 ILE 80 77 77 ILE ILE A . n A 1 81 LYS 81 78 78 LYS LYS A . n A 1 82 TRP 82 79 79 TRP TRP A . n A 1 83 ILE 83 80 80 ILE ILE A . n A 1 84 GLY 84 81 81 GLY GLY A . n A 1 85 SER 85 82 82 SER SER A . n A 1 86 LYS 86 83 83 LYS LYS A . n A 1 87 HIS 87 84 84 HIS HIS A . n A 1 88 ASP 88 85 85 ASP ASP A . n A 1 89 ASN 89 86 86 ASN ASN A . n A 1 90 PRO 90 87 87 PRO PRO A . n A 1 91 SER 91 88 88 SER SER A . n A 1 92 LYS 92 89 89 LYS LYS A . n A 1 93 ARG 93 90 90 ARG ARG A . n A 1 94 ASN 94 91 91 ASN ASN A . n A 1 95 MET 95 92 92 MET MET A . n A 1 96 GLU 96 93 93 GLU GLU A . n A 1 97 ARG 97 94 94 ARG ARG A . n A 1 98 ALA 98 95 95 ALA ALA A . n A 1 99 SER 99 96 96 SER SER A . n A 1 100 GLY 100 97 97 GLY GLY A . n A 1 101 VAL 101 98 98 VAL VAL A . n A 1 102 ILE 102 99 99 ILE ILE A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 LEU 104 101 101 LEU LEU A . n A 1 105 ASN 105 102 102 ASN ASN A . n A 1 106 ASP 106 103 103 ASP ASP A . n A 1 107 PRO 107 104 104 PRO PRO A . n A 1 108 GLU 108 105 105 GLU GLU A . n A 1 109 THR 109 106 106 THR THR A . n A 1 110 ASN 110 107 107 ASN ASN A . n A 1 111 TYR 111 108 108 TYR TYR A . n A 1 112 PRO 112 109 109 PRO PRO A . n A 1 113 ILE 113 110 110 ILE ILE A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 VAL 115 112 112 VAL VAL A . n A 1 116 MET 116 113 113 MET MET A . n A 1 117 GLU 117 114 114 GLU GLU A . n A 1 118 ALA 118 115 115 ALA ALA A . n A 1 119 SER 119 116 116 SER SER A . n A 1 120 LEU 120 117 117 LEU LEU A . n A 1 121 ILE 121 118 118 ILE ILE A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 MET 124 121 121 MET MET A . n A 1 125 ARG 125 122 122 ARG ARG A . n A 1 126 THR 126 123 123 THR THR A . n A 1 127 ALA 127 124 124 ALA ALA A . n A 1 128 ALA 128 125 125 ALA ALA A . n A 1 129 VAL 129 126 126 VAL VAL A . n A 1 130 SER 130 127 127 SER SER A . n A 1 131 VAL 131 128 128 VAL VAL A . n A 1 132 ILE 132 129 129 ILE ILE A . n A 1 133 ALA 133 130 130 ALA ALA A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 LYS 135 132 132 LYS LYS A . n A 1 136 HIS 136 133 133 HIS HIS A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 ALA 138 135 135 ALA ALA A . n A 1 139 LYS 139 136 136 LYS LYS A . n A 1 140 LYS 140 137 137 LYS LYS A . n A 1 141 GLY 141 138 138 GLY GLY A . n A 1 142 PHE 142 139 139 PHE PHE A . n A 1 143 LYS 143 140 140 LYS LYS A . n A 1 144 ASP 144 141 141 ASP ASP A . n A 1 145 LEU 145 142 142 LEU LEU A . n A 1 146 THR 146 143 143 THR THR A . n A 1 147 ILE 147 144 144 ILE ILE A . n A 1 148 ILE 148 145 145 ILE ILE A . n A 1 149 GLY 149 146 146 GLY GLY A . n A 1 150 CYS 150 147 147 CYS CYS A . n A 1 151 GLY 151 148 148 GLY GLY A . n A 1 152 LEU 152 149 149 LEU LEU A . n A 1 153 ILE 153 150 150 ILE ILE A . n A 1 154 GLY 154 151 151 GLY GLY A . n A 1 155 ASP 155 152 152 ASP ASP A . n A 1 156 LYS 156 153 153 LYS LYS A . n A 1 157 GLN 157 154 154 GLN GLN A . n A 1 158 LEU 158 155 155 LEU LEU A . n A 1 159 GLN 159 156 156 GLN GLN A . n A 1 160 SER 160 157 157 SER SER A . n A 1 161 MET 161 158 158 MET MET A . n A 1 162 LEU 162 159 159 LEU LEU A . n A 1 163 GLU 163 160 160 GLU GLU A . n A 1 164 GLN 164 161 161 GLN GLN A . n A 1 165 PHE 165 162 162 PHE PHE A . n A 1 166 ASP 166 163 163 ASP ASP A . n A 1 167 HIS 167 164 164 HIS HIS A . n A 1 168 ILE 168 165 165 ILE ILE A . n A 1 169 GLU 169 166 166 GLU GLU A . n A 1 170 ARG 170 167 167 ARG ARG A . n A 1 171 VAL 171 168 168 VAL VAL A . n A 1 172 PHE 172 169 169 PHE PHE A . n A 1 173 VAL 173 170 170 VAL VAL A . n A 1 174 TYR 174 171 171 TYR TYR A . n A 1 175 ASP 175 172 172 ASP ASP A . n A 1 176 GLN 176 173 173 GLN GLN A . n A 1 177 PHE 177 174 174 PHE PHE A . n A 1 178 SER 178 175 175 SER SER A . n A 1 179 GLU 179 176 176 GLU GLU A . n A 1 180 ALA 180 177 177 ALA ALA A . n A 1 181 CYS 181 178 178 CYS CYS A . n A 1 182 ALA 182 179 179 ALA ALA A . n A 1 183 ARG 183 180 180 ARG ARG A . n A 1 184 PHE 184 181 181 PHE PHE A . n A 1 185 VAL 185 182 182 VAL VAL A . n A 1 186 ASP 186 183 183 ASP ASP A . n A 1 187 ARG 187 184 184 ARG ARG A . n A 1 188 TRP 188 185 185 TRP TRP A . n A 1 189 GLN 189 186 186 GLN GLN A . n A 1 190 GLN 190 187 187 GLN GLN A . n A 1 191 GLN 191 188 188 GLN GLN A . n A 1 192 ARG 192 189 189 ARG ARG A . n A 1 193 PRO 193 190 190 PRO PRO A . n A 1 194 GLU 194 191 191 GLU GLU A . n A 1 195 ILE 195 192 192 ILE ILE A . n A 1 196 ASN 196 193 193 ASN ASN A . n A 1 197 PHE 197 194 194 PHE PHE A . n A 1 198 ILE 198 195 195 ILE ILE A . n A 1 199 ALA 199 196 196 ALA ALA A . n A 1 200 THR 200 197 197 THR THR A . n A 1 201 GLU 201 198 198 GLU GLU A . n A 1 202 ASN 202 199 199 ASN ASN A . n A 1 203 ALA 203 200 200 ALA ALA A . n A 1 204 LYS 204 201 201 LYS LYS A . n A 1 205 GLU 205 202 202 GLU GLU A . n A 1 206 ALA 206 203 203 ALA ALA A . n A 1 207 VAL 207 204 204 VAL VAL A . n A 1 208 SER 208 205 205 SER SER A . n A 1 209 ASN 209 206 206 ASN ASN A . n A 1 210 GLY 210 207 207 GLY GLY A . n A 1 211 GLU 211 208 208 GLU GLU A . n A 1 212 VAL 212 209 209 VAL VAL A . n A 1 213 VAL 213 210 210 VAL VAL A . n A 1 214 ILE 214 211 211 ILE ILE A . n A 1 215 THR 215 212 212 THR THR A . n A 1 216 CYS 216 213 213 CYS CYS A . n A 1 217 THR 217 214 214 THR THR A . n A 1 218 VAL 218 215 215 VAL VAL A . n A 1 219 THR 219 216 216 THR THR A . n A 1 220 ASP 220 217 217 ASP ASP A . n A 1 221 GLN 221 218 218 GLN GLN A . n A 1 222 PRO 222 219 219 PRO PRO A . n A 1 223 TYR 223 220 220 TYR TYR A . n A 1 224 ILE 224 221 221 ILE ILE A . n A 1 225 GLU 225 222 222 GLU GLU A . n A 1 226 TYR 226 223 223 TYR TYR A . n A 1 227 ASP 227 224 224 ASP ASP A . n A 1 228 TRP 228 225 225 TRP TRP A . n A 1 229 LEU 229 226 226 LEU LEU A . n A 1 230 GLN 230 227 227 GLN GLN A . n A 1 231 LYS 231 228 228 LYS LYS A . n A 1 232 GLY 232 229 229 GLY GLY A . n A 1 233 ALA 233 230 230 ALA ALA A . n A 1 234 PHE 234 231 231 PHE PHE A . n A 1 235 ILE 235 232 232 ILE ILE A . n A 1 236 SER 236 233 233 SER SER A . n A 1 237 ASN 237 234 234 ASN ASN A . n A 1 238 ILE 238 235 235 ILE ILE A . n A 1 239 SER 239 236 236 SER SER A . n A 1 240 ILE 240 237 237 ILE ILE A . n A 1 241 MET 241 238 238 MET MET A . n A 1 242 ASP 242 239 239 ASP ASP A . n A 1 243 VAL 243 240 240 VAL VAL A . n A 1 244 HIS 244 241 241 HIS HIS A . n A 1 245 LYS 245 242 242 LYS LYS A . n A 1 246 GLU 246 243 243 GLU GLU A . n A 1 247 VAL 247 244 244 VAL VAL A . n A 1 248 PHE 248 245 245 PHE PHE A . n A 1 249 ILE 249 246 246 ILE ILE A . n A 1 250 LYS 250 247 247 LYS LYS A . n A 1 251 ALA 251 248 248 ALA ALA A . n A 1 252 ASP 252 249 249 ASP ASP A . n A 1 253 LYS 253 250 250 LYS LYS A . n A 1 254 VAL 254 251 251 VAL VAL A . n A 1 255 VAL 255 252 252 VAL VAL A . n A 1 256 VAL 256 253 253 VAL VAL A . n A 1 257 ASP 257 254 254 ASP ASP A . n A 1 258 ASP 258 255 255 ASP ASP A . n A 1 259 TRP 259 256 256 TRP TRP A . n A 1 260 SER 260 257 257 SER SER A . n A 1 261 GLN 261 258 258 GLN GLN A . n A 1 262 CYS 262 259 259 CYS CYS A . n A 1 263 ASN 263 260 260 ASN ASN A . n A 1 264 ARG 264 261 ? ? ? A . n A 1 265 GLU 265 262 ? ? ? A . n A 1 266 LYS 266 263 ? ? ? A . n A 1 267 LYS 267 264 ? ? ? A . n A 1 268 THR 268 265 265 THR THR A . n A 1 269 ILE 269 266 266 ILE ILE A . n A 1 270 ASN 270 267 267 ASN ASN A . n A 1 271 GLN 271 268 268 GLN GLN A . n A 1 272 LEU 272 269 269 LEU LEU A . n A 1 273 VAL 273 270 270 VAL VAL A . n A 1 274 LEU 274 271 271 LEU LEU A . n A 1 275 GLU 275 272 272 GLU GLU A . n A 1 276 GLY 276 273 273 GLY GLY A . n A 1 277 LYS 277 274 274 LYS LYS A . n A 1 278 PHE 278 275 275 PHE PHE A . n A 1 279 SER 279 276 276 SER SER A . n A 1 280 LYS 280 277 277 LYS LYS A . n A 1 281 GLU 281 278 278 GLU GLU A . n A 1 282 ALA 282 279 279 ALA ALA A . n A 1 283 LEU 283 280 280 LEU LEU A . n A 1 284 HIS 284 281 281 HIS HIS A . n A 1 285 ALA 285 282 282 ALA ALA A . n A 1 286 GLU 286 283 283 GLU GLU A . n A 1 287 LEU 287 284 284 LEU LEU A . n A 1 288 GLY 288 285 285 GLY GLY A . n A 1 289 GLN 289 286 286 GLN GLN A . n A 1 290 LEU 290 287 287 LEU LEU A . n A 1 291 VAL 291 288 288 VAL VAL A . n A 1 292 THR 292 289 289 THR THR A . n A 1 293 GLY 293 290 290 GLY GLY A . n A 1 294 ASP 294 291 291 ASP ASP A . n A 1 295 ILE 295 292 292 ILE ILE A . n A 1 296 PRO 296 293 293 PRO PRO A . n A 1 297 GLY 297 294 294 GLY GLY A . n A 1 298 ARG 298 295 295 ARG ARG A . n A 1 299 GLU 299 296 296 GLU GLU A . n A 1 300 ASP 300 297 297 ASP ASP A . n A 1 301 ASP 301 298 298 ASP ASP A . n A 1 302 ASP 302 299 299 ASP ASP A . n A 1 303 GLU 303 300 300 GLU GLU A . n A 1 304 ILE 304 301 301 ILE ILE A . n A 1 305 ILE 305 302 302 ILE ILE A . n A 1 306 LEU 306 303 303 LEU LEU A . n A 1 307 LEU 307 304 304 LEU LEU A . n A 1 308 ASN 308 305 305 ASN ASN A . n A 1 309 PRO 309 306 306 PRO PRO A . n A 1 310 MET 310 307 307 MET MET A . n A 1 311 GLY 311 308 308 GLY GLY A . n A 1 312 MET 312 309 309 MET MET A . n A 1 313 ALA 313 310 310 ALA ALA A . n A 1 314 ILE 314 311 311 ILE ILE A . n A 1 315 GLU 315 312 312 GLU GLU A . n A 1 316 ASP 316 313 313 ASP ASP A . n A 1 317 ILE 317 314 314 ILE ILE A . n A 1 318 SER 318 315 315 SER SER A . n A 1 319 SER 319 316 316 SER SER A . n A 1 320 ALA 320 317 317 ALA ALA A . n A 1 321 TYR 321 318 318 TYR TYR A . n A 1 322 PHE 322 319 319 PHE PHE A . n A 1 323 ILE 323 320 320 ILE ILE A . n A 1 324 TYR 324 321 321 TYR TYR A . n A 1 325 GLN 325 322 322 GLN GLN A . n A 1 326 GLN 326 323 323 GLN GLN A . n A 1 327 ALA 327 324 324 ALA ALA A . n A 1 328 GLN 328 325 325 GLN GLN A . n A 1 329 GLN 329 326 326 GLN GLN A . n A 1 330 GLN 330 327 327 GLN GLN A . n A 1 331 ASN 331 328 328 ASN ASN A . n A 1 332 ILE 332 329 329 ILE ILE A . n A 1 333 GLY 333 330 330 GLY GLY A . n A 1 334 THR 334 331 331 THR THR A . n A 1 335 THR 335 332 332 THR THR A . n A 1 336 LEU 336 333 333 LEU LEU A . n A 1 337 ASN 337 334 334 ASN ASN A . n A 1 338 LEU 338 335 335 LEU LEU A . n A 1 339 TYR 339 336 336 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAJ 1 401 1 NAJ NAJ A . C 3 AKG 1 402 1 AKG AKG A . D 4 HOH 1 501 1 HOH HOH A . D 4 HOH 2 502 2 HOH HOH A . D 4 HOH 3 503 3 HOH HOH A . D 4 HOH 4 504 4 HOH HOH A . D 4 HOH 5 505 5 HOH HOH A . D 4 HOH 6 506 6 HOH HOH A . D 4 HOH 7 507 7 HOH HOH A . D 4 HOH 8 508 8 HOH HOH A . D 4 HOH 9 509 9 HOH HOH A . D 4 HOH 10 510 10 HOH HOH A . D 4 HOH 11 511 11 HOH HOH A . D 4 HOH 12 512 12 HOH HOH A . D 4 HOH 13 513 13 HOH HOH A . D 4 HOH 14 514 14 HOH HOH A . D 4 HOH 15 515 15 HOH HOH A . D 4 HOH 16 516 16 HOH HOH A . D 4 HOH 17 517 17 HOH HOH A . D 4 HOH 18 518 18 HOH HOH A . D 4 HOH 19 519 20 HOH HOH A . D 4 HOH 20 520 21 HOH HOH A . D 4 HOH 21 521 22 HOH HOH A . D 4 HOH 22 522 23 HOH HOH A . D 4 HOH 23 523 24 HOH HOH A . D 4 HOH 24 524 25 HOH HOH A . D 4 HOH 25 525 26 HOH HOH A . D 4 HOH 26 526 27 HOH HOH A . D 4 HOH 27 527 28 HOH HOH A . D 4 HOH 28 528 30 HOH HOH A . D 4 HOH 29 529 31 HOH HOH A . D 4 HOH 30 530 32 HOH HOH A . D 4 HOH 31 531 33 HOH HOH A . D 4 HOH 32 532 34 HOH HOH A . D 4 HOH 33 533 35 HOH HOH A . D 4 HOH 34 534 36 HOH HOH A . D 4 HOH 35 535 37 HOH HOH A . D 4 HOH 36 536 38 HOH HOH A . D 4 HOH 37 537 39 HOH HOH A . D 4 HOH 38 538 41 HOH HOH A . D 4 HOH 39 539 42 HOH HOH A . D 4 HOH 40 540 43 HOH HOH A . D 4 HOH 41 541 44 HOH HOH A . D 4 HOH 42 542 46 HOH HOH A . D 4 HOH 43 543 47 HOH HOH A . D 4 HOH 44 544 48 HOH HOH A . D 4 HOH 45 545 49 HOH HOH A . D 4 HOH 46 546 51 HOH HOH A . D 4 HOH 47 547 52 HOH HOH A . D 4 HOH 48 548 53 HOH HOH A . D 4 HOH 49 549 54 HOH HOH A . D 4 HOH 50 550 58 HOH HOH A . D 4 HOH 51 551 59 HOH HOH A . D 4 HOH 52 552 60 HOH HOH A . D 4 HOH 53 553 61 HOH HOH A . D 4 HOH 54 554 62 HOH HOH A . D 4 HOH 55 555 63 HOH HOH A . D 4 HOH 56 556 64 HOH HOH A . D 4 HOH 57 557 66 HOH HOH A . D 4 HOH 58 558 67 HOH HOH A . D 4 HOH 59 559 68 HOH HOH A . D 4 HOH 60 560 70 HOH HOH A . D 4 HOH 61 561 71 HOH HOH A . D 4 HOH 62 562 72 HOH HOH A . D 4 HOH 63 563 73 HOH HOH A . D 4 HOH 64 564 74 HOH HOH A . D 4 HOH 65 565 75 HOH HOH A . D 4 HOH 66 566 77 HOH HOH A . D 4 HOH 67 567 78 HOH HOH A . D 4 HOH 68 568 79 HOH HOH A . D 4 HOH 69 569 80 HOH HOH A . D 4 HOH 70 570 82 HOH HOH A . D 4 HOH 71 571 83 HOH HOH A . D 4 HOH 72 572 84 HOH HOH A . D 4 HOH 73 573 85 HOH HOH A . D 4 HOH 74 574 86 HOH HOH A . D 4 HOH 75 575 87 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.5.3 'Wed Feb 27 09:44:18 2013 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 PHENIX . ? ? ? ? phasing ? ? ? 9 PHENIX 1.8.2_1309 ? ? ? ? refinement ? ? ? # _cell.length_a 61.931 _cell.length_b 61.931 _cell.length_c 151.718 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4MPD _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4MPD _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4MPD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 35.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1 M Hepes, 0.2 M MgCl2, 29-33% PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944+' _diffrn_detector.pdbx_collection_date 2013-06-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Rigaku VariMax VHF' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4MPD _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 27.25 _reflns.number_obs 15508 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_netI_over_sigmaI 8.200 _reflns.pdbx_chi_squared 1.115 _reflns.pdbx_redundancy 6.900 _reflns.percent_possible_obs 85.900 _reflns.B_iso_Wilson_estimate 27.080 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 4.5 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.100 2.140 ? ? ? 0.464 ? ? 1.046 6.900 ? 811 90.400 1 1 2.140 2.180 ? ? ? 0.435 ? ? 1.131 7.800 ? 830 96.400 2 1 2.180 2.220 ? ? ? 0.440 ? ? 1.068 8.200 ? 788 90.700 3 1 2.220 2.260 ? ? ? 0.419 ? ? 1.101 8.100 ? 816 93.200 4 1 2.260 2.310 ? ? ? 0.366 ? ? 1.130 8.300 ? 793 88.700 5 1 2.310 2.370 ? ? ? 0.344 ? ? 1.118 8.200 ? 789 89.400 6 1 2.370 2.420 ? ? ? 0.327 ? ? 1.187 8.000 ? 778 89.100 7 1 2.420 2.490 ? ? ? 0.309 ? ? 1.117 8.100 ? 743 83.800 8 1 2.490 2.560 ? ? ? 0.274 ? ? 1.126 7.800 ? 742 83.800 9 1 2.560 2.650 ? ? ? 0.262 ? ? 1.156 7.500 ? 734 83.000 10 1 2.650 2.740 ? ? ? 0.227 ? ? 1.267 7.300 ? 709 79.800 11 1 2.740 2.850 ? ? ? 0.203 ? ? 1.185 6.900 ? 702 78.500 12 1 2.850 2.980 ? ? ? 0.170 ? ? 1.144 6.500 ? 693 76.800 13 1 2.980 3.140 ? ? ? 0.142 ? ? 1.145 6.000 ? 672 74.800 14 1 3.140 3.330 ? ? ? 0.099 ? ? 1.134 5.700 ? 671 74.400 15 1 3.330 3.590 ? ? ? 0.077 ? ? 1.050 4.900 ? 680 74.500 16 1 3.590 3.950 ? ? ? 0.067 ? ? 1.060 4.200 ? 744 81.800 17 1 3.950 4.520 ? ? ? 0.055 ? ? 1.075 4.000 ? 880 94.600 18 1 4.520 5.700 ? ? ? 0.049 ? ? 0.977 5.500 ? 940 98.200 19 1 5.700 50.000 ? ? ? 0.051 ? ? 1.048 8.100 ? 993 94.600 20 1 # _refine.entry_id 4MPD _refine.ls_d_res_high 2.1010 _refine.ls_d_res_low 27.2490 _refine.pdbx_ls_sigma_F 1.330 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 85.6400 _refine.ls_number_reflns_obs 15406 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2329 _refine.ls_R_factor_R_work 0.2293 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2658 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.7700 _refine.ls_number_reflns_R_free 1505 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 34.1003 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2700 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7943 _refine.B_iso_max 94.140 _refine.B_iso_min 15.270 _refine.pdbx_overall_phase_error 26.4400 _refine.occupancy_max 1.000 _refine.occupancy_min 0.030 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2513 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 2642 _refine_hist.d_res_high 2.1010 _refine_hist.d_res_low 27.2490 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 2622 0.003 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 3557 0.701 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 400 0.052 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 459 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 974 14.472 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 2.1009 2.1687 11 93.0000 1332 . 0.2632 0.2819 . 144 . 1476 . . 'X-RAY DIFFRACTION' 2.1687 2.2461 11 92.0000 1318 . 0.2491 0.2656 . 147 . 1465 . . 'X-RAY DIFFRACTION' 2.2461 2.3360 11 91.0000 1300 . 0.2578 0.3144 . 147 . 1447 . . 'X-RAY DIFFRACTION' 2.3360 2.4423 11 88.0000 1264 . 0.2607 0.3089 . 135 . 1399 . . 'X-RAY DIFFRACTION' 2.4423 2.5710 11 83.0000 1224 . 0.2435 0.2695 . 131 . 1355 . . 'X-RAY DIFFRACTION' 2.5710 2.7319 11 81.0000 1164 . 0.2720 0.2916 . 123 . 1287 . . 'X-RAY DIFFRACTION' 2.7319 2.9426 11 76.0000 1119 . 0.2761 0.3525 . 117 . 1236 . . 'X-RAY DIFFRACTION' 2.9426 3.2383 11 75.0000 1114 . 0.2473 0.2873 . 114 . 1228 . . 'X-RAY DIFFRACTION' 3.2383 3.7059 11 74.0000 1112 . 0.2147 0.2190 . 115 . 1227 . . 'X-RAY DIFFRACTION' 3.7059 4.6652 11 91.0000 1366 . 0.1918 0.2192 . 159 . 1525 . . 'X-RAY DIFFRACTION' 4.6652 27.2510 11 98.0000 1588 . 0.2129 0.2769 . 173 . 1761 . . 'X-RAY DIFFRACTION' # _struct.entry_id 4MPD _struct.title 'Staphyloferrin B precursor biosynthetic enzyme SbnB bound a-ketoglutarate and NAD+' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MPD _struct_keywords.text 'siderophore, iron, L-Dap synthesis, ACEGA dehydrogenase, oxidoreductase' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8NYS7_STAAW _struct_ref.pdbx_db_accession Q8NYS7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNREMLYLNRSDIEQAGGNHSQVYVDALTEALTAHAHNDFVQPLKPYLRQDPENGHIADRIIAMPSHIGGEHAISGIKWI GSKHDNPSKRNMERASGVIILNDPETNYPIAVMEASLISSMRTAAVSVIAAKHLAKKGFKDLTIIGCGLIGDKQLQSMLE QFDHIERVFVYDQFSEACARFVDRWQQQRPEINFIATENAKEAVSNGEVVITCTVTDQPYIEYDWLQKGAFISNISIMDV HKEVFIKADKVVVDDWSQCNREKKTINQLVLEGKFSKEALHAELGQLVTGDIPGREDDDEIILLNPMGMAIEDISSAYFI YQQAQQQNIGTTLNLY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MPD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 339 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NYS7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 336 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 336 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MPD GLY A 1 ? UNP Q8NYS7 ? ? 'expression tag' -2 1 1 4MPD SER A 2 ? UNP Q8NYS7 ? ? 'expression tag' -1 2 1 4MPD HIS A 3 ? UNP Q8NYS7 ? ? 'expression tag' 0 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7370 ? 1 MORE -32 ? 1 'SSA (A^2)' 24170 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0.0000000000 1.0000000000 0.0000000000 -61.9310000000 1.0000000000 0.0000000000 0.0000000000 61.9310000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 12 ? ALA A 19 ? ASN A 9 ALA A 16 1 ? 8 HELX_P HELX_P2 2 HIS A 23 ? HIS A 40 ? HIS A 20 HIS A 37 1 ? 18 HELX_P HELX_P3 3 HIS A 87 ? ARG A 93 ? HIS A 84 ARG A 90 1 ? 7 HELX_P HELX_P4 4 ALA A 118 ? ALA A 138 ? ALA A 115 ALA A 135 1 ? 21 HELX_P HELX_P5 5 GLY A 151 ? PHE A 165 ? GLY A 148 PHE A 162 1 ? 15 HELX_P HELX_P6 6 PHE A 177 ? ARG A 192 ? PHE A 174 ARG A 189 1 ? 16 HELX_P HELX_P7 7 ASN A 202 ? ASN A 209 ? ASN A 199 ASN A 206 1 ? 8 HELX_P HELX_P8 8 GLU A 225 ? LEU A 229 ? GLU A 222 LEU A 226 5 ? 5 HELX_P HELX_P9 9 HIS A 244 ? ALA A 251 ? HIS A 241 ALA A 248 1 ? 8 HELX_P HELX_P10 10 ASP A 258 ? ASN A 263 ? ASP A 255 ASN A 260 1 ? 6 HELX_P HELX_P11 11 ILE A 269 ? GLU A 275 ? ILE A 266 GLU A 272 1 ? 7 HELX_P HELX_P12 12 LEU A 287 ? THR A 292 ? LEU A 284 THR A 289 1 ? 6 HELX_P HELX_P13 13 MET A 312 ? GLN A 330 ? MET A 309 GLN A 327 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel B 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 50 ? LEU A 51 ? TYR A 47 LEU A 48 A 2 ARG A 63 ? SER A 69 ? ARG A 60 SER A 66 A 3 SER A 78 ? SER A 85 ? SER A 75 SER A 82 A 4 ALA A 98 ? ASN A 105 ? ALA A 95 ASN A 102 A 5 PRO A 112 ? GLU A 117 ? PRO A 109 GLU A 114 A 6 GLU A 7 ? LEU A 11 ? GLU A 4 LEU A 8 A 7 THR A 334 ? ASN A 337 ? THR A 331 ASN A 334 B 1 ASN A 196 ? ALA A 199 ? ASN A 193 ALA A 196 B 2 ARG A 170 ? TYR A 174 ? ARG A 167 TYR A 171 B 3 ASP A 144 ? ILE A 148 ? ASP A 141 ILE A 145 B 4 VAL A 212 ? THR A 215 ? VAL A 209 THR A 212 B 5 PHE A 234 ? SER A 236 ? PHE A 231 SER A 233 B 6 ILE A 305 ? ASN A 308 ? ILE A 302 ASN A 305 B 7 LYS A 253 ? VAL A 256 ? LYS A 250 VAL A 253 B 8 ALA A 285 ? GLU A 286 ? ALA A 282 GLU A 283 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 51 ? N LEU A 48 O ILE A 64 ? O ILE A 61 A 2 3 N ARG A 63 ? N ARG A 60 O SER A 85 ? O SER A 82 A 3 4 N GLY A 84 ? N GLY A 81 O SER A 99 ? O SER A 96 A 4 5 N LEU A 104 ? N LEU A 101 O ILE A 113 ? O ILE A 110 A 5 6 O VAL A 115 ? O VAL A 112 N LEU A 11 ? N LEU A 8 A 6 7 N MET A 8 ? N MET A 5 O LEU A 336 ? O LEU A 333 B 1 2 O ILE A 198 ? O ILE A 195 N VAL A 173 ? N VAL A 170 B 2 3 O PHE A 172 ? O PHE A 169 N ILE A 147 ? N ILE A 144 B 3 4 N THR A 146 ? N THR A 143 O VAL A 212 ? O VAL A 209 B 4 5 N VAL A 213 ? N VAL A 210 O SER A 236 ? O SER A 233 B 5 6 N ILE A 235 ? N ILE A 232 O LEU A 307 ? O LEU A 304 B 6 7 O ASN A 308 ? O ASN A 305 N VAL A 255 ? N VAL A 252 B 7 8 N VAL A 256 ? N VAL A 253 O ALA A 285 ? O ALA A 282 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NAJ 401 ? 23 'BINDING SITE FOR RESIDUE NAJ A 401' AC2 Software A AKG 402 ? 13 'BINDING SITE FOR RESIDUE AKG A 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 ARG A 63 ? ARG A 60 . ? 1_555 ? 2 AC1 23 ARG A 97 ? ARG A 94 . ? 1_555 ? 3 AC1 23 ARG A 125 ? ARG A 122 . ? 1_555 ? 4 AC1 23 THR A 126 ? THR A 123 . ? 1_555 ? 5 AC1 23 GLY A 151 ? GLY A 148 . ? 1_555 ? 6 AC1 23 LEU A 152 ? LEU A 149 . ? 1_555 ? 7 AC1 23 ILE A 153 ? ILE A 150 . ? 1_555 ? 8 AC1 23 ASP A 175 ? ASP A 172 . ? 1_555 ? 9 AC1 23 GLN A 176 ? GLN A 173 . ? 1_555 ? 10 AC1 23 PHE A 177 ? PHE A 174 . ? 1_555 ? 11 AC1 23 CYS A 216 ? CYS A 213 . ? 1_555 ? 12 AC1 23 THR A 217 ? THR A 214 . ? 1_555 ? 13 AC1 23 VAL A 218 ? VAL A 215 . ? 1_555 ? 14 AC1 23 THR A 219 ? THR A 216 . ? 1_555 ? 15 AC1 23 ILE A 238 ? ILE A 235 . ? 1_555 ? 16 AC1 23 THR A 292 ? THR A 289 . ? 3_555 ? 17 AC1 23 PRO A 309 ? PRO A 306 . ? 1_555 ? 18 AC1 23 GLY A 311 ? GLY A 308 . ? 1_555 ? 19 AC1 23 AKG C . ? AKG A 402 . ? 1_555 ? 20 AC1 23 HOH D . ? HOH A 510 . ? 1_555 ? 21 AC1 23 HOH D . ? HOH A 548 . ? 1_555 ? 22 AC1 23 HOH D . ? HOH A 561 . ? 1_555 ? 23 AC1 23 HOH D . ? HOH A 566 . ? 1_555 ? 24 AC2 13 LYS A 48 ? LYS A 45 . ? 1_555 ? 25 AC2 13 ARG A 63 ? ARG A 60 . ? 1_555 ? 26 AC2 13 ILE A 65 ? ILE A 62 . ? 1_555 ? 27 AC2 13 MET A 67 ? MET A 64 . ? 1_555 ? 28 AC2 13 LYS A 81 ? LYS A 78 . ? 1_555 ? 29 AC2 13 ILE A 83 ? ILE A 80 . ? 1_555 ? 30 AC2 13 ARG A 97 ? ARG A 94 . ? 1_555 ? 31 AC2 13 ALA A 98 ? ALA A 95 . ? 1_555 ? 32 AC2 13 ARG A 125 ? ARG A 122 . ? 1_555 ? 33 AC2 13 MET A 310 ? MET A 307 . ? 1_555 ? 34 AC2 13 GLY A 311 ? GLY A 308 . ? 1_555 ? 35 AC2 13 NAJ B . ? NAJ A 401 . ? 1_555 ? 36 AC2 13 HOH D . ? HOH A 536 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 107 ? ? 59.40 0.66 2 1 TYR A 220 ? ? -141.50 -27.16 3 1 ILE A 237 ? ? 69.14 -56.35 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -23.8292 22.7176 -11.1396 0.2646 0.2544 0.1945 -0.0188 -0.0736 0.0467 4.6259 1.3836 2.6032 0.4307 -2.0719 0.1900 -0.1783 0.0075 0.1469 0.4600 -0.1222 -0.1740 0.2006 -0.1580 -0.0732 'X-RAY DIFFRACTION' 2 ? refined -17.4648 37.1148 -3.4940 0.3440 0.3679 0.6061 0.0005 -0.0751 0.0569 1.1951 0.5235 5.8302 0.5641 -1.6147 -1.3137 -0.0241 -0.1437 -0.2335 -0.0666 0.4512 -0.1790 0.1545 -0.1259 1.3235 'X-RAY DIFFRACTION' 3 ? refined -24.3032 28.3224 0.8709 0.2111 0.2379 0.3925 0.0455 -0.0608 -0.0437 4.8125 2.8915 3.4030 -0.4976 -0.1468 0.4084 0.0073 -0.0432 0.0105 -0.3267 0.3718 -0.7988 0.2509 0.0485 0.2422 'X-RAY DIFFRACTION' 4 ? refined -2.0589 17.4892 -3.7425 0.1955 0.1618 0.1858 0.0337 -0.0016 -0.0130 3.7247 3.2522 1.6543 0.4370 0.2549 -0.0639 -0.0671 0.1064 -0.0423 -0.1171 -0.3225 0.0195 0.1874 0.1030 0.0632 'X-RAY DIFFRACTION' 5 ? refined 0.3787 40.0122 -6.4844 0.4083 0.2865 0.3835 0.0728 -0.0300 0.0042 3.6470 3.8241 5.4206 2.0869 4.1164 3.2546 -0.1979 0.0458 0.1985 -0.2505 0.4449 0.0951 -0.4253 -0.9352 -0.2530 'X-RAY DIFFRACTION' 6 ? refined 1.8574 28.3628 -19.1721 0.3172 0.3722 0.1691 -0.0055 0.0314 0.0396 5.9268 4.1038 4.3007 -0.8634 3.0019 -0.0830 0.1575 -0.4238 0.2066 0.8231 0.7393 -0.2998 -0.8428 -0.0002 0.7431 'X-RAY DIFFRACTION' 7 ? refined -24.8811 26.3609 -10.1542 0.2672 0.2840 0.3474 -0.0251 -0.0166 0.0675 2.4581 -0.2681 0.5527 -1.0892 -0.8953 0.5095 0.0311 -0.0736 0.0055 0.3358 0.4762 -0.0168 -0.0586 0.1416 -0.1289 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 0 ;chain 'A' and (resid 3 through 36 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 A 0 ;chain 'A' and (resid 37 through 74 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 0 A 0 ;chain 'A' and (resid 75 through 115 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 0 A 0 ;chain 'A' and (resid 116 through 253 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 0 A 0 ;chain 'A' and (resid 254 through 283 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 0 A 0 ;chain 'A' and (resid 284 through 301 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 0 A 0 ;chain 'A' and (resid 302 through 336 ) ; ? ? ? ? ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A ASN 2 ? A ASN 5 6 1 Y 1 A ASP 51 ? A ASP 54 7 1 Y 1 A PRO 52 ? A PRO 55 8 1 Y 1 A GLU 53 ? A GLU 56 9 1 Y 1 A ASN 54 ? A ASN 57 10 1 Y 1 A GLY 55 ? A GLY 58 11 1 Y 1 A HIS 56 ? A HIS 59 12 1 Y 1 A ILE 57 ? A ILE 60 13 1 Y 1 A GLY 69 ? A GLY 72 14 1 Y 1 A GLY 70 ? A GLY 73 15 1 Y 1 A GLU 71 ? A GLU 74 16 1 Y 1 A HIS 72 ? A HIS 75 17 1 Y 1 A ALA 73 ? A ALA 76 18 1 Y 1 A ARG 261 ? A ARG 264 19 1 Y 1 A GLU 262 ? A GLU 265 20 1 Y 1 A LYS 263 ? A LYS 266 21 1 Y 1 A LYS 264 ? A LYS 267 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AKG C1 C N N 1 AKG O1 O N N 2 AKG O2 O N N 3 AKG C2 C N N 4 AKG O5 O N N 5 AKG C3 C N N 6 AKG C4 C N N 7 AKG C5 C N N 8 AKG O3 O N N 9 AKG O4 O N N 10 AKG HO2 H N N 11 AKG H31 H N N 12 AKG H32 H N N 13 AKG H41 H N N 14 AKG H42 H N N 15 AKG HO4 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 ARG N N N N 30 ARG CA C N S 31 ARG C C N N 32 ARG O O N N 33 ARG CB C N N 34 ARG CG C N N 35 ARG CD C N N 36 ARG NE N N N 37 ARG CZ C N N 38 ARG NH1 N N N 39 ARG NH2 N N N 40 ARG OXT O N N 41 ARG H H N N 42 ARG H2 H N N 43 ARG HA H N N 44 ARG HB2 H N N 45 ARG HB3 H N N 46 ARG HG2 H N N 47 ARG HG3 H N N 48 ARG HD2 H N N 49 ARG HD3 H N N 50 ARG HE H N N 51 ARG HH11 H N N 52 ARG HH12 H N N 53 ARG HH21 H N N 54 ARG HH22 H N N 55 ARG HXT H N N 56 ASN N N N N 57 ASN CA C N S 58 ASN C C N N 59 ASN O O N N 60 ASN CB C N N 61 ASN CG C N N 62 ASN OD1 O N N 63 ASN ND2 N N N 64 ASN OXT O N N 65 ASN H H N N 66 ASN H2 H N N 67 ASN HA H N N 68 ASN HB2 H N N 69 ASN HB3 H N N 70 ASN HD21 H N N 71 ASN HD22 H N N 72 ASN HXT H N N 73 ASP N N N N 74 ASP CA C N S 75 ASP C C N N 76 ASP O O N N 77 ASP CB C N N 78 ASP CG C N N 79 ASP OD1 O N N 80 ASP OD2 O N N 81 ASP OXT O N N 82 ASP H H N N 83 ASP H2 H N N 84 ASP HA H N N 85 ASP HB2 H N N 86 ASP HB3 H N N 87 ASP HD2 H N N 88 ASP HXT H N N 89 CYS N N N N 90 CYS CA C N R 91 CYS C C N N 92 CYS O O N N 93 CYS CB C N N 94 CYS SG S N N 95 CYS OXT O N N 96 CYS H H N N 97 CYS H2 H N N 98 CYS HA H N N 99 CYS HB2 H N N 100 CYS HB3 H N N 101 CYS HG H N N 102 CYS HXT H N N 103 GLN N N N N 104 GLN CA C N S 105 GLN C C N N 106 GLN O O N N 107 GLN CB C N N 108 GLN CG C N N 109 GLN CD C N N 110 GLN OE1 O N N 111 GLN NE2 N N N 112 GLN OXT O N N 113 GLN H H N N 114 GLN H2 H N N 115 GLN HA H N N 116 GLN HB2 H N N 117 GLN HB3 H N N 118 GLN HG2 H N N 119 GLN HG3 H N N 120 GLN HE21 H N N 121 GLN HE22 H N N 122 GLN HXT H N N 123 GLU N N N N 124 GLU CA C N S 125 GLU C C N N 126 GLU O O N N 127 GLU CB C N N 128 GLU CG C N N 129 GLU CD C N N 130 GLU OE1 O N N 131 GLU OE2 O N N 132 GLU OXT O N N 133 GLU H H N N 134 GLU H2 H N N 135 GLU HA H N N 136 GLU HB2 H N N 137 GLU HB3 H N N 138 GLU HG2 H N N 139 GLU HG3 H N N 140 GLU HE2 H N N 141 GLU HXT H N N 142 GLY N N N N 143 GLY CA C N N 144 GLY C C N N 145 GLY O O N N 146 GLY OXT O N N 147 GLY H H N N 148 GLY H2 H N N 149 GLY HA2 H N N 150 GLY HA3 H N N 151 GLY HXT H N N 152 HIS N N N N 153 HIS CA C N S 154 HIS C C N N 155 HIS O O N N 156 HIS CB C N N 157 HIS CG C Y N 158 HIS ND1 N Y N 159 HIS CD2 C Y N 160 HIS CE1 C Y N 161 HIS NE2 N Y N 162 HIS OXT O N N 163 HIS H H N N 164 HIS H2 H N N 165 HIS HA H N N 166 HIS HB2 H N N 167 HIS HB3 H N N 168 HIS HD1 H N N 169 HIS HD2 H N N 170 HIS HE1 H N N 171 HIS HE2 H N N 172 HIS HXT H N N 173 HOH O O N N 174 HOH H1 H N N 175 HOH H2 H N N 176 ILE N N N N 177 ILE CA C N S 178 ILE C C N N 179 ILE O O N N 180 ILE CB C N S 181 ILE CG1 C N N 182 ILE CG2 C N N 183 ILE CD1 C N N 184 ILE OXT O N N 185 ILE H H N N 186 ILE H2 H N N 187 ILE HA H N N 188 ILE HB H N N 189 ILE HG12 H N N 190 ILE HG13 H N N 191 ILE HG21 H N N 192 ILE HG22 H N N 193 ILE HG23 H N N 194 ILE HD11 H N N 195 ILE HD12 H N N 196 ILE HD13 H N N 197 ILE HXT H N N 198 LEU N N N N 199 LEU CA C N S 200 LEU C C N N 201 LEU O O N N 202 LEU CB C N N 203 LEU CG C N N 204 LEU CD1 C N N 205 LEU CD2 C N N 206 LEU OXT O N N 207 LEU H H N N 208 LEU H2 H N N 209 LEU HA H N N 210 LEU HB2 H N N 211 LEU HB3 H N N 212 LEU HG H N N 213 LEU HD11 H N N 214 LEU HD12 H N N 215 LEU HD13 H N N 216 LEU HD21 H N N 217 LEU HD22 H N N 218 LEU HD23 H N N 219 LEU HXT H N N 220 LYS N N N N 221 LYS CA C N S 222 LYS C C N N 223 LYS O O N N 224 LYS CB C N N 225 LYS CG C N N 226 LYS CD C N N 227 LYS CE C N N 228 LYS NZ N N N 229 LYS OXT O N N 230 LYS H H N N 231 LYS H2 H N N 232 LYS HA H N N 233 LYS HB2 H N N 234 LYS HB3 H N N 235 LYS HG2 H N N 236 LYS HG3 H N N 237 LYS HD2 H N N 238 LYS HD3 H N N 239 LYS HE2 H N N 240 LYS HE3 H N N 241 LYS HZ1 H N N 242 LYS HZ2 H N N 243 LYS HZ3 H N N 244 LYS HXT H N N 245 MET N N N N 246 MET CA C N S 247 MET C C N N 248 MET O O N N 249 MET CB C N N 250 MET CG C N N 251 MET SD S N N 252 MET CE C N N 253 MET OXT O N N 254 MET H H N N 255 MET H2 H N N 256 MET HA H N N 257 MET HB2 H N N 258 MET HB3 H N N 259 MET HG2 H N N 260 MET HG3 H N N 261 MET HE1 H N N 262 MET HE2 H N N 263 MET HE3 H N N 264 MET HXT H N N 265 NAJ PA P N N 266 NAJ O1A O N N 267 NAJ O2A O N N 268 NAJ O5B O N N 269 NAJ C5B C N N 270 NAJ C4B C N R 271 NAJ O4B O N N 272 NAJ C3B C N S 273 NAJ O3B O N N 274 NAJ C2B C N R 275 NAJ O2B O N N 276 NAJ C1B C N R 277 NAJ N9A N Y N 278 NAJ C8A C Y N 279 NAJ N7A N Y N 280 NAJ C5A C Y N 281 NAJ C6A C Y N 282 NAJ N6A N N N 283 NAJ N1A N Y N 284 NAJ C2A C Y N 285 NAJ N3A N Y N 286 NAJ C4A C Y N 287 NAJ O3 O N N 288 NAJ PN P N N 289 NAJ O1N O N N 290 NAJ O2N O N N 291 NAJ O5D O N N 292 NAJ C5D C N N 293 NAJ C4D C N R 294 NAJ O4D O N N 295 NAJ C3D C N S 296 NAJ O3D O N N 297 NAJ C2D C N R 298 NAJ O2D O N N 299 NAJ C1D C N R 300 NAJ N1N N Y N 301 NAJ C2N C Y N 302 NAJ C3N C Y N 303 NAJ C7N C N N 304 NAJ O7N O N N 305 NAJ N7N N N N 306 NAJ C4N C Y N 307 NAJ C5N C Y N 308 NAJ C6N C Y N 309 NAJ H51A H N N 310 NAJ H52A H N N 311 NAJ H4B H N N 312 NAJ H3B H N N 313 NAJ HO3A H N N 314 NAJ H2B H N N 315 NAJ HO2A H N N 316 NAJ H1B H N N 317 NAJ H8A H N N 318 NAJ H61A H N N 319 NAJ H62A H N N 320 NAJ H1A H N N 321 NAJ H2A H N N 322 NAJ H51N H N N 323 NAJ H52N H N N 324 NAJ H4D H N N 325 NAJ H3D H N N 326 NAJ HO3N H N N 327 NAJ H2D H N N 328 NAJ HO2N H N N 329 NAJ H1D H N N 330 NAJ H2N H N N 331 NAJ H71N H N N 332 NAJ H72N H N N 333 NAJ H4N H N N 334 NAJ H5N H N N 335 NAJ H6N H N N 336 PHE N N N N 337 PHE CA C N S 338 PHE C C N N 339 PHE O O N N 340 PHE CB C N N 341 PHE CG C Y N 342 PHE CD1 C Y N 343 PHE CD2 C Y N 344 PHE CE1 C Y N 345 PHE CE2 C Y N 346 PHE CZ C Y N 347 PHE OXT O N N 348 PHE H H N N 349 PHE H2 H N N 350 PHE HA H N N 351 PHE HB2 H N N 352 PHE HB3 H N N 353 PHE HD1 H N N 354 PHE HD2 H N N 355 PHE HE1 H N N 356 PHE HE2 H N N 357 PHE HZ H N N 358 PHE HXT H N N 359 PRO N N N N 360 PRO CA C N S 361 PRO C C N N 362 PRO O O N N 363 PRO CB C N N 364 PRO CG C N N 365 PRO CD C N N 366 PRO OXT O N N 367 PRO H H N N 368 PRO HA H N N 369 PRO HB2 H N N 370 PRO HB3 H N N 371 PRO HG2 H N N 372 PRO HG3 H N N 373 PRO HD2 H N N 374 PRO HD3 H N N 375 PRO HXT H N N 376 SER N N N N 377 SER CA C N S 378 SER C C N N 379 SER O O N N 380 SER CB C N N 381 SER OG O N N 382 SER OXT O N N 383 SER H H N N 384 SER H2 H N N 385 SER HA H N N 386 SER HB2 H N N 387 SER HB3 H N N 388 SER HG H N N 389 SER HXT H N N 390 THR N N N N 391 THR CA C N S 392 THR C C N N 393 THR O O N N 394 THR CB C N R 395 THR OG1 O N N 396 THR CG2 C N N 397 THR OXT O N N 398 THR H H N N 399 THR H2 H N N 400 THR HA H N N 401 THR HB H N N 402 THR HG1 H N N 403 THR HG21 H N N 404 THR HG22 H N N 405 THR HG23 H N N 406 THR HXT H N N 407 TRP N N N N 408 TRP CA C N S 409 TRP C C N N 410 TRP O O N N 411 TRP CB C N N 412 TRP CG C Y N 413 TRP CD1 C Y N 414 TRP CD2 C Y N 415 TRP NE1 N Y N 416 TRP CE2 C Y N 417 TRP CE3 C Y N 418 TRP CZ2 C Y N 419 TRP CZ3 C Y N 420 TRP CH2 C Y N 421 TRP OXT O N N 422 TRP H H N N 423 TRP H2 H N N 424 TRP HA H N N 425 TRP HB2 H N N 426 TRP HB3 H N N 427 TRP HD1 H N N 428 TRP HE1 H N N 429 TRP HE3 H N N 430 TRP HZ2 H N N 431 TRP HZ3 H N N 432 TRP HH2 H N N 433 TRP HXT H N N 434 TYR N N N N 435 TYR CA C N S 436 TYR C C N N 437 TYR O O N N 438 TYR CB C N N 439 TYR CG C Y N 440 TYR CD1 C Y N 441 TYR CD2 C Y N 442 TYR CE1 C Y N 443 TYR CE2 C Y N 444 TYR CZ C Y N 445 TYR OH O N N 446 TYR OXT O N N 447 TYR H H N N 448 TYR H2 H N N 449 TYR HA H N N 450 TYR HB2 H N N 451 TYR HB3 H N N 452 TYR HD1 H N N 453 TYR HD2 H N N 454 TYR HE1 H N N 455 TYR HE2 H N N 456 TYR HH H N N 457 TYR HXT H N N 458 VAL N N N N 459 VAL CA C N S 460 VAL C C N N 461 VAL O O N N 462 VAL CB C N N 463 VAL CG1 C N N 464 VAL CG2 C N N 465 VAL OXT O N N 466 VAL H H N N 467 VAL H2 H N N 468 VAL HA H N N 469 VAL HB H N N 470 VAL HG11 H N N 471 VAL HG12 H N N 472 VAL HG13 H N N 473 VAL HG21 H N N 474 VAL HG22 H N N 475 VAL HG23 H N N 476 VAL HXT H N N 477 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AKG C1 O1 doub N N 1 AKG C1 O2 sing N N 2 AKG C1 C2 sing N N 3 AKG O2 HO2 sing N N 4 AKG C2 O5 doub N N 5 AKG C2 C3 sing N N 6 AKG C3 C4 sing N N 7 AKG C3 H31 sing N N 8 AKG C3 H32 sing N N 9 AKG C4 C5 sing N N 10 AKG C4 H41 sing N N 11 AKG C4 H42 sing N N 12 AKG C5 O3 doub N N 13 AKG C5 O4 sing N N 14 AKG O4 HO4 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 ARG N CA sing N N 28 ARG N H sing N N 29 ARG N H2 sing N N 30 ARG CA C sing N N 31 ARG CA CB sing N N 32 ARG CA HA sing N N 33 ARG C O doub N N 34 ARG C OXT sing N N 35 ARG CB CG sing N N 36 ARG CB HB2 sing N N 37 ARG CB HB3 sing N N 38 ARG CG CD sing N N 39 ARG CG HG2 sing N N 40 ARG CG HG3 sing N N 41 ARG CD NE sing N N 42 ARG CD HD2 sing N N 43 ARG CD HD3 sing N N 44 ARG NE CZ sing N N 45 ARG NE HE sing N N 46 ARG CZ NH1 sing N N 47 ARG CZ NH2 doub N N 48 ARG NH1 HH11 sing N N 49 ARG NH1 HH12 sing N N 50 ARG NH2 HH21 sing N N 51 ARG NH2 HH22 sing N N 52 ARG OXT HXT sing N N 53 ASN N CA sing N N 54 ASN N H sing N N 55 ASN N H2 sing N N 56 ASN CA C sing N N 57 ASN CA CB sing N N 58 ASN CA HA sing N N 59 ASN C O doub N N 60 ASN C OXT sing N N 61 ASN CB CG sing N N 62 ASN CB HB2 sing N N 63 ASN CB HB3 sing N N 64 ASN CG OD1 doub N N 65 ASN CG ND2 sing N N 66 ASN ND2 HD21 sing N N 67 ASN ND2 HD22 sing N N 68 ASN OXT HXT sing N N 69 ASP N CA sing N N 70 ASP N H sing N N 71 ASP N H2 sing N N 72 ASP CA C sing N N 73 ASP CA CB sing N N 74 ASP CA HA sing N N 75 ASP C O doub N N 76 ASP C OXT sing N N 77 ASP CB CG sing N N 78 ASP CB HB2 sing N N 79 ASP CB HB3 sing N N 80 ASP CG OD1 doub N N 81 ASP CG OD2 sing N N 82 ASP OD2 HD2 sing N N 83 ASP OXT HXT sing N N 84 CYS N CA sing N N 85 CYS N H sing N N 86 CYS N H2 sing N N 87 CYS CA C sing N N 88 CYS CA CB sing N N 89 CYS CA HA sing N N 90 CYS C O doub N N 91 CYS C OXT sing N N 92 CYS CB SG sing N N 93 CYS CB HB2 sing N N 94 CYS CB HB3 sing N N 95 CYS SG HG sing N N 96 CYS OXT HXT sing N N 97 GLN N CA sing N N 98 GLN N H sing N N 99 GLN N H2 sing N N 100 GLN CA C sing N N 101 GLN CA CB sing N N 102 GLN CA HA sing N N 103 GLN C O doub N N 104 GLN C OXT sing N N 105 GLN CB CG sing N N 106 GLN CB HB2 sing N N 107 GLN CB HB3 sing N N 108 GLN CG CD sing N N 109 GLN CG HG2 sing N N 110 GLN CG HG3 sing N N 111 GLN CD OE1 doub N N 112 GLN CD NE2 sing N N 113 GLN NE2 HE21 sing N N 114 GLN NE2 HE22 sing N N 115 GLN OXT HXT sing N N 116 GLU N CA sing N N 117 GLU N H sing N N 118 GLU N H2 sing N N 119 GLU CA C sing N N 120 GLU CA CB sing N N 121 GLU CA HA sing N N 122 GLU C O doub N N 123 GLU C OXT sing N N 124 GLU CB CG sing N N 125 GLU CB HB2 sing N N 126 GLU CB HB3 sing N N 127 GLU CG CD sing N N 128 GLU CG HG2 sing N N 129 GLU CG HG3 sing N N 130 GLU CD OE1 doub N N 131 GLU CD OE2 sing N N 132 GLU OE2 HE2 sing N N 133 GLU OXT HXT sing N N 134 GLY N CA sing N N 135 GLY N H sing N N 136 GLY N H2 sing N N 137 GLY CA C sing N N 138 GLY CA HA2 sing N N 139 GLY CA HA3 sing N N 140 GLY C O doub N N 141 GLY C OXT sing N N 142 GLY OXT HXT sing N N 143 HIS N CA sing N N 144 HIS N H sing N N 145 HIS N H2 sing N N 146 HIS CA C sing N N 147 HIS CA CB sing N N 148 HIS CA HA sing N N 149 HIS C O doub N N 150 HIS C OXT sing N N 151 HIS CB CG sing N N 152 HIS CB HB2 sing N N 153 HIS CB HB3 sing N N 154 HIS CG ND1 sing Y N 155 HIS CG CD2 doub Y N 156 HIS ND1 CE1 doub Y N 157 HIS ND1 HD1 sing N N 158 HIS CD2 NE2 sing Y N 159 HIS CD2 HD2 sing N N 160 HIS CE1 NE2 sing Y N 161 HIS CE1 HE1 sing N N 162 HIS NE2 HE2 sing N N 163 HIS OXT HXT sing N N 164 HOH O H1 sing N N 165 HOH O H2 sing N N 166 ILE N CA sing N N 167 ILE N H sing N N 168 ILE N H2 sing N N 169 ILE CA C sing N N 170 ILE CA CB sing N N 171 ILE CA HA sing N N 172 ILE C O doub N N 173 ILE C OXT sing N N 174 ILE CB CG1 sing N N 175 ILE CB CG2 sing N N 176 ILE CB HB sing N N 177 ILE CG1 CD1 sing N N 178 ILE CG1 HG12 sing N N 179 ILE CG1 HG13 sing N N 180 ILE CG2 HG21 sing N N 181 ILE CG2 HG22 sing N N 182 ILE CG2 HG23 sing N N 183 ILE CD1 HD11 sing N N 184 ILE CD1 HD12 sing N N 185 ILE CD1 HD13 sing N N 186 ILE OXT HXT sing N N 187 LEU N CA sing N N 188 LEU N H sing N N 189 LEU N H2 sing N N 190 LEU CA C sing N N 191 LEU CA CB sing N N 192 LEU CA HA sing N N 193 LEU C O doub N N 194 LEU C OXT sing N N 195 LEU CB CG sing N N 196 LEU CB HB2 sing N N 197 LEU CB HB3 sing N N 198 LEU CG CD1 sing N N 199 LEU CG CD2 sing N N 200 LEU CG HG sing N N 201 LEU CD1 HD11 sing N N 202 LEU CD1 HD12 sing N N 203 LEU CD1 HD13 sing N N 204 LEU CD2 HD21 sing N N 205 LEU CD2 HD22 sing N N 206 LEU CD2 HD23 sing N N 207 LEU OXT HXT sing N N 208 LYS N CA sing N N 209 LYS N H sing N N 210 LYS N H2 sing N N 211 LYS CA C sing N N 212 LYS CA CB sing N N 213 LYS CA HA sing N N 214 LYS C O doub N N 215 LYS C OXT sing N N 216 LYS CB CG sing N N 217 LYS CB HB2 sing N N 218 LYS CB HB3 sing N N 219 LYS CG CD sing N N 220 LYS CG HG2 sing N N 221 LYS CG HG3 sing N N 222 LYS CD CE sing N N 223 LYS CD HD2 sing N N 224 LYS CD HD3 sing N N 225 LYS CE NZ sing N N 226 LYS CE HE2 sing N N 227 LYS CE HE3 sing N N 228 LYS NZ HZ1 sing N N 229 LYS NZ HZ2 sing N N 230 LYS NZ HZ3 sing N N 231 LYS OXT HXT sing N N 232 MET N CA sing N N 233 MET N H sing N N 234 MET N H2 sing N N 235 MET CA C sing N N 236 MET CA CB sing N N 237 MET CA HA sing N N 238 MET C O doub N N 239 MET C OXT sing N N 240 MET CB CG sing N N 241 MET CB HB2 sing N N 242 MET CB HB3 sing N N 243 MET CG SD sing N N 244 MET CG HG2 sing N N 245 MET CG HG3 sing N N 246 MET SD CE sing N N 247 MET CE HE1 sing N N 248 MET CE HE2 sing N N 249 MET CE HE3 sing N N 250 MET OXT HXT sing N N 251 NAJ PA O1A doub N N 252 NAJ PA O2A sing N N 253 NAJ PA O5B sing N N 254 NAJ PA O3 sing N N 255 NAJ O5B C5B sing N N 256 NAJ C5B C4B sing N N 257 NAJ C5B H51A sing N N 258 NAJ C5B H52A sing N N 259 NAJ C4B O4B sing N N 260 NAJ C4B C3B sing N N 261 NAJ C4B H4B sing N N 262 NAJ O4B C1B sing N N 263 NAJ C3B O3B sing N N 264 NAJ C3B C2B sing N N 265 NAJ C3B H3B sing N N 266 NAJ O3B HO3A sing N N 267 NAJ C2B O2B sing N N 268 NAJ C2B C1B sing N N 269 NAJ C2B H2B sing N N 270 NAJ O2B HO2A sing N N 271 NAJ C1B N9A sing N N 272 NAJ C1B H1B sing N N 273 NAJ N9A C8A sing Y N 274 NAJ N9A C4A sing Y N 275 NAJ C8A N7A doub Y N 276 NAJ C8A H8A sing N N 277 NAJ N7A C5A sing Y N 278 NAJ C5A C6A sing Y N 279 NAJ C5A C4A doub Y N 280 NAJ C6A N6A sing N N 281 NAJ C6A N1A doub Y N 282 NAJ N6A H61A sing N N 283 NAJ N6A H62A sing N N 284 NAJ N1A C2A sing Y N 285 NAJ N1A H1A sing N N 286 NAJ C2A N3A doub Y N 287 NAJ C2A H2A sing N N 288 NAJ N3A C4A sing Y N 289 NAJ O3 PN sing N N 290 NAJ PN O1N doub N N 291 NAJ PN O2N sing N N 292 NAJ PN O5D sing N N 293 NAJ O5D C5D sing N N 294 NAJ C5D C4D sing N N 295 NAJ C5D H51N sing N N 296 NAJ C5D H52N sing N N 297 NAJ C4D O4D sing N N 298 NAJ C4D C3D sing N N 299 NAJ C4D H4D sing N N 300 NAJ O4D C1D sing N N 301 NAJ C3D O3D sing N N 302 NAJ C3D C2D sing N N 303 NAJ C3D H3D sing N N 304 NAJ O3D HO3N sing N N 305 NAJ C2D O2D sing N N 306 NAJ C2D C1D sing N N 307 NAJ C2D H2D sing N N 308 NAJ O2D HO2N sing N N 309 NAJ C1D N1N sing N N 310 NAJ C1D H1D sing N N 311 NAJ N1N C2N sing Y N 312 NAJ N1N C6N doub Y N 313 NAJ C2N C3N doub Y N 314 NAJ C2N H2N sing N N 315 NAJ C3N C7N sing N N 316 NAJ C3N C4N sing Y N 317 NAJ C7N O7N doub N N 318 NAJ C7N N7N sing N N 319 NAJ N7N H71N sing N N 320 NAJ N7N H72N sing N N 321 NAJ C4N C5N doub Y N 322 NAJ C4N H4N sing N N 323 NAJ C5N C6N sing Y N 324 NAJ C5N H5N sing N N 325 NAJ C6N H6N sing N N 326 PHE N CA sing N N 327 PHE N H sing N N 328 PHE N H2 sing N N 329 PHE CA C sing N N 330 PHE CA CB sing N N 331 PHE CA HA sing N N 332 PHE C O doub N N 333 PHE C OXT sing N N 334 PHE CB CG sing N N 335 PHE CB HB2 sing N N 336 PHE CB HB3 sing N N 337 PHE CG CD1 doub Y N 338 PHE CG CD2 sing Y N 339 PHE CD1 CE1 sing Y N 340 PHE CD1 HD1 sing N N 341 PHE CD2 CE2 doub Y N 342 PHE CD2 HD2 sing N N 343 PHE CE1 CZ doub Y N 344 PHE CE1 HE1 sing N N 345 PHE CE2 CZ sing Y N 346 PHE CE2 HE2 sing N N 347 PHE CZ HZ sing N N 348 PHE OXT HXT sing N N 349 PRO N CA sing N N 350 PRO N CD sing N N 351 PRO N H sing N N 352 PRO CA C sing N N 353 PRO CA CB sing N N 354 PRO CA HA sing N N 355 PRO C O doub N N 356 PRO C OXT sing N N 357 PRO CB CG sing N N 358 PRO CB HB2 sing N N 359 PRO CB HB3 sing N N 360 PRO CG CD sing N N 361 PRO CG HG2 sing N N 362 PRO CG HG3 sing N N 363 PRO CD HD2 sing N N 364 PRO CD HD3 sing N N 365 PRO OXT HXT sing N N 366 SER N CA sing N N 367 SER N H sing N N 368 SER N H2 sing N N 369 SER CA C sing N N 370 SER CA CB sing N N 371 SER CA HA sing N N 372 SER C O doub N N 373 SER C OXT sing N N 374 SER CB OG sing N N 375 SER CB HB2 sing N N 376 SER CB HB3 sing N N 377 SER OG HG sing N N 378 SER OXT HXT sing N N 379 THR N CA sing N N 380 THR N H sing N N 381 THR N H2 sing N N 382 THR CA C sing N N 383 THR CA CB sing N N 384 THR CA HA sing N N 385 THR C O doub N N 386 THR C OXT sing N N 387 THR CB OG1 sing N N 388 THR CB CG2 sing N N 389 THR CB HB sing N N 390 THR OG1 HG1 sing N N 391 THR CG2 HG21 sing N N 392 THR CG2 HG22 sing N N 393 THR CG2 HG23 sing N N 394 THR OXT HXT sing N N 395 TRP N CA sing N N 396 TRP N H sing N N 397 TRP N H2 sing N N 398 TRP CA C sing N N 399 TRP CA CB sing N N 400 TRP CA HA sing N N 401 TRP C O doub N N 402 TRP C OXT sing N N 403 TRP CB CG sing N N 404 TRP CB HB2 sing N N 405 TRP CB HB3 sing N N 406 TRP CG CD1 doub Y N 407 TRP CG CD2 sing Y N 408 TRP CD1 NE1 sing Y N 409 TRP CD1 HD1 sing N N 410 TRP CD2 CE2 doub Y N 411 TRP CD2 CE3 sing Y N 412 TRP NE1 CE2 sing Y N 413 TRP NE1 HE1 sing N N 414 TRP CE2 CZ2 sing Y N 415 TRP CE3 CZ3 doub Y N 416 TRP CE3 HE3 sing N N 417 TRP CZ2 CH2 doub Y N 418 TRP CZ2 HZ2 sing N N 419 TRP CZ3 CH2 sing Y N 420 TRP CZ3 HZ3 sing N N 421 TRP CH2 HH2 sing N N 422 TRP OXT HXT sing N N 423 TYR N CA sing N N 424 TYR N H sing N N 425 TYR N H2 sing N N 426 TYR CA C sing N N 427 TYR CA CB sing N N 428 TYR CA HA sing N N 429 TYR C O doub N N 430 TYR C OXT sing N N 431 TYR CB CG sing N N 432 TYR CB HB2 sing N N 433 TYR CB HB3 sing N N 434 TYR CG CD1 doub Y N 435 TYR CG CD2 sing Y N 436 TYR CD1 CE1 sing Y N 437 TYR CD1 HD1 sing N N 438 TYR CD2 CE2 doub Y N 439 TYR CD2 HD2 sing N N 440 TYR CE1 CZ doub Y N 441 TYR CE1 HE1 sing N N 442 TYR CE2 CZ sing Y N 443 TYR CE2 HE2 sing N N 444 TYR CZ OH sing N N 445 TYR OH HH sing N N 446 TYR OXT HXT sing N N 447 VAL N CA sing N N 448 VAL N H sing N N 449 VAL N H2 sing N N 450 VAL CA C sing N N 451 VAL CA CB sing N N 452 VAL CA HA sing N N 453 VAL C O doub N N 454 VAL C OXT sing N N 455 VAL CB CG1 sing N N 456 VAL CB CG2 sing N N 457 VAL CB HB sing N N 458 VAL CG1 HG11 sing N N 459 VAL CG1 HG12 sing N N 460 VAL CG1 HG13 sing N N 461 VAL CG2 HG21 sing N N 462 VAL CG2 HG22 sing N N 463 VAL CG2 HG23 sing N N 464 VAL OXT HXT sing N N 465 # _atom_sites.entry_id 4MPD _atom_sites.fract_transf_matrix[1][1] 0.016147 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016147 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006591 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_