HEADER HYDROLASE 12-SEP-13 4MPH TITLE CRYSTAL STRUCTURE OF BALDCB / VANY-LIKE L,D-CARBOXYPEPTIDASE ZINC(II)- TITLE 2 BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANYL-D-ALANINE CARBOXYPEPTIDASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VANY-LIKE PEPTIDASE; COMPND 5 SYNONYM: SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 1392; SOURCE 5 STRAIN: AMES; SOURCE 6 GENE: BACI_C24940, BAS2349, BA_2526, DACA3, GBAA_2526, VANY; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, HEDGEHOG/DD-PEPTIDASE FOLD, VANY-LIKE FAMILY, KEYWDS 4 MEROPS FAMILY M15B, ZINC-DEPENDENT METALLOPEPTIDASE, PEPTIDOGLYCAN KEYWDS 5 METALLOPEPTIDASE, BALDCB, L, D-CARBOXYPEPTIDASE, TETRAPEPTIDASE, KEYWDS 6 SUBSTRATE L-ALA-D-ISO-GLN-L-LYS-D-ALA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Z.WAWRZAK,O.ONOPRIYENKO,T.SKARINA,S.SHATSMAN, AUTHOR 2 S.N.PETERSON,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 OF INFECTIOUS DISEASES (CSGID) REVDAT 5 28-FEB-24 4MPH 1 REMARK SEQADV LINK REVDAT 4 23-JUL-14 4MPH 1 JRNL REVDAT 3 18-JUN-14 4MPH 1 JRNL REMARK REVDAT 2 19-FEB-14 4MPH 1 KEYWDS TITLE REVDAT 1 25-SEP-13 4MPH 0 JRNL AUTH C.N.HOYLAND,C.ALDRIDGE,R.M.CLEVERLEY,M.C.DUCHENE,G.MINASOV, JRNL AUTH 2 O.ONOPRIYENKO,K.SIDIQ,P.J.STOGIOS,W.F.ANDERSON,R.A.DANIEL, JRNL AUTH 3 A.SAVCHENKO,W.VOLLMER,R.J.LEWIS JRNL TITL STRUCTURE OF THE LDCB LD-CARBOXYPEPTIDASE REVEALS THE JRNL TITL 2 MOLECULAR BASIS OF PEPTIDOGLYCAN RECOGNITION. JRNL REF STRUCTURE V. 22 949 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24909784 JRNL DOI 10.1016/J.STR.2014.04.015 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 67494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3110 - 5.8393 0.99 2662 138 0.1489 0.1614 REMARK 3 2 5.8393 - 4.6415 1.00 2698 141 0.1303 0.1520 REMARK 3 3 4.6415 - 4.0567 1.00 2680 138 0.1144 0.1927 REMARK 3 4 4.0567 - 3.6867 1.00 2688 139 0.1227 0.1493 REMARK 3 5 3.6867 - 3.4229 1.00 2687 140 0.1347 0.1714 REMARK 3 6 3.4229 - 3.2214 1.00 2697 146 0.1467 0.1718 REMARK 3 7 3.2214 - 3.0603 1.00 2671 142 0.1488 0.1701 REMARK 3 8 3.0603 - 2.9272 1.00 2686 145 0.1550 0.1842 REMARK 3 9 2.9272 - 2.8146 1.00 2687 143 0.1525 0.2074 REMARK 3 10 2.8146 - 2.7176 1.00 2662 137 0.1578 0.2031 REMARK 3 11 2.7176 - 2.6326 1.00 2707 140 0.1601 0.2169 REMARK 3 12 2.6326 - 2.5574 1.00 2667 143 0.1718 0.2276 REMARK 3 13 2.5574 - 2.4902 1.00 2717 145 0.1689 0.2330 REMARK 3 14 2.4902 - 2.4294 1.00 2697 139 0.1620 0.2045 REMARK 3 15 2.4294 - 2.3742 1.00 2633 140 0.1524 0.1839 REMARK 3 16 2.3742 - 2.3237 1.00 2701 141 0.1515 0.1978 REMARK 3 17 2.3237 - 2.2773 1.00 2702 142 0.1568 0.2255 REMARK 3 18 2.2773 - 2.2343 1.00 2687 141 0.1610 0.1973 REMARK 3 19 2.2343 - 2.1944 1.00 2670 141 0.1666 0.2266 REMARK 3 20 2.1944 - 2.1572 1.00 2662 141 0.1769 0.2043 REMARK 3 21 2.1572 - 2.1225 1.00 2743 145 0.1859 0.2171 REMARK 3 22 2.1225 - 2.0898 0.98 2590 134 0.1937 0.2777 REMARK 3 23 2.0898 - 2.0591 0.96 2548 138 0.2071 0.2362 REMARK 3 24 2.0591 - 2.0301 0.94 2578 135 0.2282 0.3023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3064 REMARK 3 ANGLE : 0.991 4148 REMARK 3 CHIRALITY : 0.066 434 REMARK 3 PLANARITY : 0.003 533 REMARK 3 DIHEDRAL : 11.848 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 55:77 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0144 50.2187 12.0458 REMARK 3 T TENSOR REMARK 3 T11: 0.3398 T22: 0.3226 REMARK 3 T33: 0.4344 T12: 0.1658 REMARK 3 T13: -0.0509 T23: 0.0890 REMARK 3 L TENSOR REMARK 3 L11: 3.8062 L22: 6.8636 REMARK 3 L33: 3.9041 L12: 2.1788 REMARK 3 L13: -1.4577 L23: 1.1024 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.0932 S13: 0.5855 REMARK 3 S21: -0.0615 S22: -0.0766 S23: 0.6956 REMARK 3 S31: -0.6898 S32: -0.7422 S33: 0.1321 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 78:126 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6325 30.4003 11.3699 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1915 REMARK 3 T33: 0.0962 T12: -0.0101 REMARK 3 T13: -0.0229 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 4.4074 L22: 2.4590 REMARK 3 L33: 3.4152 L12: 0.1396 REMARK 3 L13: -0.2950 L23: 0.1844 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.3808 S13: -0.1620 REMARK 3 S21: -0.1905 S22: 0.0226 S23: 0.0357 REMARK 3 S31: 0.1462 S32: -0.2394 S33: -0.0240 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESI 127:154 REMARK 3 ORIGIN FOR THE GROUP (A): 43.9335 45.9133 27.5081 REMARK 3 T TENSOR REMARK 3 T11: 0.7429 T22: 0.5832 REMARK 3 T33: 0.3496 T12: -0.0444 REMARK 3 T13: -0.0647 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.5385 L22: 5.4363 REMARK 3 L33: 5.8851 L12: 0.7570 REMARK 3 L13: -0.7103 L23: 0.7574 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.9448 S13: 0.2581 REMARK 3 S21: 2.1249 S22: -0.2540 S23: -0.3478 REMARK 3 S31: -0.2358 S32: 0.7852 S33: 0.1707 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESI 155:208 REMARK 3 ORIGIN FOR THE GROUP (A): 55.4531 37.8559 14.4115 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.2070 REMARK 3 T33: 0.1444 T12: -0.0225 REMARK 3 T13: -0.0069 T23: 0.0606 REMARK 3 L TENSOR REMARK 3 L11: 3.0217 L22: 2.4210 REMARK 3 L33: 2.0892 L12: -0.7180 REMARK 3 L13: -0.2141 L23: -0.1787 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: 0.0973 S13: 0.1622 REMARK 3 S21: 0.1092 S22: -0.0173 S23: -0.2321 REMARK 3 S31: -0.1474 S32: 0.2625 S33: 0.0332 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESI 52:82 REMARK 3 ORIGIN FOR THE GROUP (A): 66.5178 24.5257 44.7573 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.2096 REMARK 3 T33: 0.1688 T12: 0.0126 REMARK 3 T13: -0.0216 T23: 0.1030 REMARK 3 L TENSOR REMARK 3 L11: 4.4184 L22: 1.9334 REMARK 3 L33: 2.7348 L12: 1.3952 REMARK 3 L13: 1.1800 L23: 0.1541 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: -0.1301 S13: -0.0454 REMARK 3 S21: 0.1772 S22: -0.0513 S23: -0.1541 REMARK 3 S31: -0.0550 S32: 0.3350 S33: -0.0107 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESI 83:129 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7937 20.1128 36.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.1911 REMARK 3 T33: 0.1851 T12: -0.0075 REMARK 3 T13: -0.0305 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 3.7351 L22: 1.3716 REMARK 3 L33: 2.9520 L12: -0.2606 REMARK 3 L13: 0.0082 L23: 0.2096 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.1772 S13: -0.2673 REMARK 3 S21: -0.0047 S22: -0.0650 S23: 0.0585 REMARK 3 S31: 0.2322 S32: -0.2733 S33: 0.0709 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESI 130:156 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2570 37.2280 33.6366 REMARK 3 T TENSOR REMARK 3 T11: 0.5655 T22: 0.6413 REMARK 3 T33: 0.7351 T12: -0.0397 REMARK 3 T13: -0.2305 T23: 0.3518 REMARK 3 L TENSOR REMARK 3 L11: 3.4373 L22: 4.7379 REMARK 3 L33: 8.2489 L12: 1.4443 REMARK 3 L13: 0.6093 L23: -1.8747 REMARK 3 S TENSOR REMARK 3 S11: -0.4728 S12: 1.1022 S13: 1.6794 REMARK 3 S21: -0.4154 S22: 0.5241 S23: 0.9062 REMARK 3 S31: -1.5769 S32: -0.9011 S33: -0.0453 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESI 157:208 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4227 29.8774 43.1843 REMARK 3 T TENSOR REMARK 3 T11: 0.2005 T22: 0.2759 REMARK 3 T33: 0.2510 T12: 0.0759 REMARK 3 T13: -0.0246 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 3.1983 L22: 1.6526 REMARK 3 L33: 2.2701 L12: 0.5947 REMARK 3 L13: 0.8355 L23: 0.2127 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.0473 S13: 0.5766 REMARK 3 S21: -0.0306 S22: -0.0296 S23: 0.2802 REMARK 3 S31: -0.3613 S32: -0.5643 S33: 0.0674 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND RESI 209:243 REMARK 3 ORIGIN FOR THE GROUP (A): 54.9250 46.9378 8.1294 REMARK 3 T TENSOR REMARK 3 T11: 0.2502 T22: 0.2466 REMARK 3 T33: 0.2678 T12: -0.0236 REMARK 3 T13: -0.0051 T23: 0.1261 REMARK 3 L TENSOR REMARK 3 L11: 1.9984 L22: 3.1790 REMARK 3 L33: 1.8301 L12: -0.2321 REMARK 3 L13: 0.5168 L23: -1.1121 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: 0.3796 S13: 0.4325 REMARK 3 S21: -0.1583 S22: 0.0237 S23: -0.3047 REMARK 3 S31: -0.4103 S32: 0.0274 S33: 0.0411 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND RESI 209:243 REMARK 3 ORIGIN FOR THE GROUP (A): 53.6738 29.3821 52.5622 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.2873 REMARK 3 T33: 0.2029 T12: 0.0219 REMARK 3 T13: -0.0041 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.0503 L22: 2.6828 REMARK 3 L33: 3.9319 L12: 0.1055 REMARK 3 L13: 1.0329 L23: 0.5121 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: -0.5890 S13: 0.2588 REMARK 3 S21: 0.1503 S22: -0.1621 S23: 0.0720 REMARK 3 S31: -0.1309 S32: -0.1072 S33: 0.0859 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35417 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 32.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51100 REMARK 200 FOR SHELL : 4.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4K, 0.2 M AMMONIUM ACETATE, REMARK 280 0.1 M SODIUM ACETATE, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.41550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.16850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.83300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.41550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.16850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.83300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.41550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.16850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.83300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.41550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.16850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.83300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 643 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 672 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ARG A 142 REMARK 465 LYS A 143 REMARK 465 GLY A 144 REMARK 465 GLN A 145 REMARK 465 GLU A 146 REMARK 465 HIS A 147 REMARK 465 THR A 148 REMARK 465 ASP A 149 REMARK 465 ARG B 142 REMARK 465 LYS B 143 REMARK 465 GLY B 144 REMARK 465 GLN B 145 REMARK 465 GLU B 146 REMARK 465 HIS B 147 REMARK 465 THR B 148 REMARK 465 ASP B 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 167 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 151 30.98 -150.36 REMARK 500 SER A 152 46.89 -85.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE3 B 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 160 NE2 REMARK 620 2 ASP A 167 OD1 108.5 REMARK 620 3 ASP A 167 OD2 79.5 58.4 REMARK 620 4 HIS A 219 ND1 110.4 101.9 160.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 160 NE2 REMARK 620 2 ASP B 167 OD1 111.3 REMARK 620 3 ASP B 167 OD2 86.2 59.5 REMARK 620 4 HIS B 219 ND1 109.8 94.9 153.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE3 B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JID RELATED DB: PDB REMARK 900 RELATED ID: CSGID-IDP02154 RELATED DB: TARGETTRACK DBREF 4MPH A 55 243 UNP Q81QA6 Q81QA6_BACAN 55 243 DBREF 4MPH B 55 243 UNP Q81QA6 Q81QA6_BACAN 55 243 SEQADV 4MPH SER A -2 UNP Q81QA6 EXPRESSION TAG SEQADV 4MPH ASN A -1 UNP Q81QA6 EXPRESSION TAG SEQADV 4MPH ALA A 0 UNP Q81QA6 EXPRESSION TAG SEQADV 4MPH SER B -2 UNP Q81QA6 EXPRESSION TAG SEQADV 4MPH ASN B -1 UNP Q81QA6 EXPRESSION TAG SEQADV 4MPH ALA B 0 UNP Q81QA6 EXPRESSION TAG SEQRES 1 A 192 SER ASN ALA ALA SER SER PHE ALA SER VAL GLN ALA VAL SEQRES 2 A 192 VAL ASN LYS GLU TYR GLY LEU PRO GLU ASP TYR LYS PRO SEQRES 3 A 192 GLU ASP LEU VAL VAL PRO ASN VAL PRO PHE SER PHE SER SEQRES 4 A 192 GLY THR LEU GLU LYS SER TYR LEU ARG LYS GLU ALA ALA SEQRES 5 A 192 GLU ALA LEU GLU ARG LEU PHE ASP LEU ALA ASN LYS GLU SEQRES 6 A 192 GLY ILE GLN LEU ASN ALA VAL SER GLY PHE ARG SER TYR SEQRES 7 A 192 ASP TYR GLN LYS LYS LEU TYR ALA ASN ASN VAL LYS ARG SEQRES 8 A 192 LYS GLY GLN GLU HIS THR ASP ARG PHE SER ALA LYS PRO SEQRES 9 A 192 GLY HIS SER GLU HIS GLN THR GLY LEU THR MET ASP VAL SEQRES 10 A 192 SER SER LYS SER ALA ASN ASN GLU LEU GLU LEU THR PHE SEQRES 11 A 192 ALA ASN THR LYS GLU GLY LYS TRP LEU LYS GLU ASN ALA SEQRES 12 A 192 HIS ARG ALA GLY PHE ILE ILE ARG TYR PRO LYS GLY LYS SEQRES 13 A 192 GLU SER ILE THR GLY TYR ALA TYR GLU PRO TRP HIS ILE SEQRES 14 A 192 ARG TYR VAL GLY ASP ILE ALA GLU SER ILE TYR LYS LYS SEQRES 15 A 192 LYS LEU THR LEU GLU GLU TYR MET ASN LEU SEQRES 1 B 192 SER ASN ALA ALA SER SER PHE ALA SER VAL GLN ALA VAL SEQRES 2 B 192 VAL ASN LYS GLU TYR GLY LEU PRO GLU ASP TYR LYS PRO SEQRES 3 B 192 GLU ASP LEU VAL VAL PRO ASN VAL PRO PHE SER PHE SER SEQRES 4 B 192 GLY THR LEU GLU LYS SER TYR LEU ARG LYS GLU ALA ALA SEQRES 5 B 192 GLU ALA LEU GLU ARG LEU PHE ASP LEU ALA ASN LYS GLU SEQRES 6 B 192 GLY ILE GLN LEU ASN ALA VAL SER GLY PHE ARG SER TYR SEQRES 7 B 192 ASP TYR GLN LYS LYS LEU TYR ALA ASN ASN VAL LYS ARG SEQRES 8 B 192 LYS GLY GLN GLU HIS THR ASP ARG PHE SER ALA LYS PRO SEQRES 9 B 192 GLY HIS SER GLU HIS GLN THR GLY LEU THR MET ASP VAL SEQRES 10 B 192 SER SER LYS SER ALA ASN ASN GLU LEU GLU LEU THR PHE SEQRES 11 B 192 ALA ASN THR LYS GLU GLY LYS TRP LEU LYS GLU ASN ALA SEQRES 12 B 192 HIS ARG ALA GLY PHE ILE ILE ARG TYR PRO LYS GLY LYS SEQRES 13 B 192 GLU SER ILE THR GLY TYR ALA TYR GLU PRO TRP HIS ILE SEQRES 14 B 192 ARG TYR VAL GLY ASP ILE ALA GLU SER ILE TYR LYS LYS SEQRES 15 B 192 LYS LEU THR LEU GLU GLU TYR MET ASN LEU HET ZN A 400 1 HET CL A 401 1 HET ZN B 301 1 HET CL B 302 1 HET PE3 B 303 10 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM PE3 3,6,9,12,15,18,21,24,27,30,33,36,39- HETNAM 2 PE3 TRIDECAOXAHENTETRACONTANE-1,41-DIOL HETSYN PE3 POLYETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CL 2(CL 1-) FORMUL 7 PE3 C28 H58 O15 FORMUL 8 HOH *460(H2 O) HELIX 1 1 SER A 56 SER A 60 5 5 HELIX 2 2 LEU A 93 TYR A 97 5 5 HELIX 3 3 LYS A 100 GLU A 116 1 17 HELIX 4 4 SER A 128 ASN A 139 1 12 HELIX 5 5 SER A 158 GLY A 163 5 6 HELIX 6 6 SER A 170 ASN A 174 5 5 HELIX 7 7 GLU A 178 ASN A 183 5 6 HELIX 8 8 THR A 184 ALA A 194 1 11 HELIX 9 9 HIS A 195 ALA A 197 5 3 HELIX 10 10 LYS A 207 GLY A 212 1 6 HELIX 11 11 ILE A 226 LYS A 233 1 8 HELIX 12 12 THR A 236 MET A 241 1 6 HELIX 13 13 LEU B 93 TYR B 97 5 5 HELIX 14 14 LYS B 100 GLU B 116 1 17 HELIX 15 15 SER B 128 LYS B 141 1 14 HELIX 16 16 SER B 158 GLY B 163 5 6 HELIX 17 17 SER B 170 ASN B 174 5 5 HELIX 18 18 GLU B 178 ASN B 183 5 6 HELIX 19 19 THR B 184 ALA B 194 1 11 HELIX 20 20 HIS B 195 ALA B 197 5 3 HELIX 21 21 LYS B 207 GLY B 212 1 6 HELIX 22 22 ASP B 225 LYS B 234 1 10 HELIX 23 23 THR B 236 MET B 241 1 6 SHEET 1 A 2 LEU A 80 VAL A 81 0 SHEET 2 A 2 LEU A 98 ARG A 99 -1 O LEU A 98 N VAL A 81 SHEET 1 B 4 ASN A 121 SER A 124 0 SHEET 2 B 4 THR A 165 SER A 169 -1 O ASP A 167 N VAL A 123 SHEET 3 B 4 HIS A 219 TYR A 222 -1 O ILE A 220 N MET A 166 SHEET 4 B 4 PHE A 199 ILE A 201 -1 N ILE A 200 O ARG A 221 SHEET 1 C 2 LEU B 80 VAL B 81 0 SHEET 2 C 2 LEU B 98 ARG B 99 -1 O LEU B 98 N VAL B 81 SHEET 1 D 4 ASN B 121 SER B 124 0 SHEET 2 D 4 THR B 165 SER B 169 -1 O ASP B 167 N VAL B 123 SHEET 3 D 4 HIS B 219 TYR B 222 -1 O ILE B 220 N MET B 166 SHEET 4 D 4 PHE B 199 ILE B 201 -1 N ILE B 200 O ARG B 221 LINK NE2 HIS A 160 ZN ZN A 400 1555 1555 2.04 LINK OD1 ASP A 167 ZN ZN A 400 1555 1555 1.93 LINK OD2 ASP A 167 ZN ZN A 400 1555 1555 2.39 LINK ND1 HIS A 219 ZN ZN A 400 1555 1555 2.08 LINK NE2 HIS B 160 ZN ZN B 301 1555 1555 1.99 LINK OD1 ASP B 167 ZN ZN B 301 1555 1555 1.95 LINK OD2 ASP B 167 ZN ZN B 301 1555 1555 2.34 LINK ND1 HIS B 219 ZN ZN B 301 1555 1555 2.06 SITE 1 AC1 4 HIS A 160 ASP A 167 HIS A 219 CL A 401 SITE 1 AC2 6 HIS A 160 ASP A 167 GLU A 216 TRP A 218 SITE 2 AC2 6 HIS A 219 ZN A 400 SITE 1 AC3 4 HIS B 160 ASP B 167 HIS B 219 CL B 302 SITE 1 AC4 7 HIS B 160 ASP B 167 GLU B 216 TRP B 218 SITE 2 AC4 7 HIS B 219 ZN B 301 HOH B 642 SITE 1 AC5 9 LYS B 76 LEU B 80 GLU B 94 TYR B 97 SITE 2 AC5 9 PHE B 126 SER B 128 HOH B 529 HOH B 579 SITE 3 AC5 9 HOH B 592 CRYST1 76.831 112.337 125.666 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007958 0.00000