HEADER LYASE 13-SEP-13 4MPP TITLE CRYSTAL STRUCTURE OF BENZOYLFORMATE DECARBOXYLASE MUTANT TITLE 2 H281Y/T377P/F397T/A460I COMPND MOL_ID: 1; COMPND 2 MOLECULE: BENZOYLFORMATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BFD, BFDC; COMPND 5 EC: 4.1.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: MDLC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24 KEYWDS THDP-DEPENDENT, CYTOL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.H.ANDREWS,M.J.MCLEISH REVDAT 2 28-FEB-24 4MPP 1 REMARK SEQADV LINK REVDAT 1 18-MAR-15 4MPP 0 JRNL AUTH F.H.ANDREWS,M.G.LOGSDON,H.R.BRODKIN,A.M.MALIK,J.D.HORTON, JRNL AUTH 2 D.RINGE,G.D.PETSKO,M.J.MCLEISH JRNL TITL A PSEUDO STUDY OF THIAMIN DIPHOSPHATE-DEPENDENT JRNL TITL 2 DECARBOXYLASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 84583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.360 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.4524 - 3.6128 0.99 6180 149 0.1346 0.1470 REMARK 3 2 3.6128 - 2.8695 1.00 6042 147 0.1317 0.1630 REMARK 3 3 2.8695 - 2.5073 1.00 5975 145 0.1372 0.1590 REMARK 3 4 2.5073 - 2.2783 1.00 5976 144 0.1377 0.1687 REMARK 3 5 2.2783 - 2.1151 1.00 5925 144 0.1311 0.1395 REMARK 3 6 2.1151 - 1.9905 1.00 5935 143 0.1275 0.1674 REMARK 3 7 1.9905 - 1.8909 0.99 5881 143 0.1273 0.1369 REMARK 3 8 1.8909 - 1.8086 0.99 5887 142 0.1247 0.1533 REMARK 3 9 1.8086 - 1.7390 0.99 5874 143 0.1333 0.1832 REMARK 3 10 1.7390 - 1.6790 0.99 5827 141 0.1359 0.1751 REMARK 3 11 1.6790 - 1.6265 0.99 5805 140 0.1321 0.1789 REMARK 3 12 1.6265 - 1.5801 0.98 5827 142 0.1333 0.1963 REMARK 3 13 1.5801 - 1.5385 0.98 5801 140 0.1361 0.1561 REMARK 3 14 1.5385 - 1.5010 0.96 5648 137 0.1427 0.1812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4267 REMARK 3 ANGLE : 1.599 5860 REMARK 3 CHIRALITY : 0.105 646 REMARK 3 PLANARITY : 0.010 786 REMARK 3 DIHEDRAL : 12.890 1562 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM, 0.15 M CALCIUM REMARK 280 CHLORIDE, 22% V/V PEG400, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.67800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.85200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.58150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.67800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.85200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.58150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.67800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.85200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.58150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.67800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.85200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.58150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -292.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 162.71200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 95.70400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 162.71200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 274.32600 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 95.70400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 274.32600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 604 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 738 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 844 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1077 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1179 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1210 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 527 REMARK 465 LYS A 528 REMARK 465 ARG A 529 REMARK 465 SER A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 866 O HOH A 993 2.02 REMARK 500 O HOH A 1071 O HOH A 1118 2.07 REMARK 500 O HOH A 1157 O HOH A 1163 2.07 REMARK 500 O HOH A 910 O HOH A 1237 2.08 REMARK 500 O HOH A 1202 O HOH A 1239 2.12 REMARK 500 O HOH A 1060 O HOH A 1181 2.13 REMARK 500 O HOH A 809 O HOH A 1144 2.13 REMARK 500 O HOH A 913 O HOH A 1237 2.15 REMARK 500 O HOH A 922 O HOH A 1160 2.15 REMARK 500 O HOH A 1246 O HOH A 1250 2.15 REMARK 500 O HOH A 1069 O HOH A 1127 2.15 REMARK 500 O HOH A 1061 O HOH A 1167 2.16 REMARK 500 O HOH A 1246 O HOH A 1247 2.18 REMARK 500 O HOH A 887 O HOH A 1160 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 107 O HOH A 1163 2765 2.05 REMARK 500 O HOH A 1166 O HOH A 1186 3757 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -148.48 47.30 REMARK 500 ASN A 202 67.94 -152.78 REMARK 500 TYR A 281 -76.78 -133.63 REMARK 500 GLU A 375 53.30 -142.42 REMARK 500 PRO A 447 46.50 -88.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 117 O REMARK 620 2 LEU A 118 O 75.0 REMARK 620 3 ARG A 120 O 92.6 93.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 347 OD2 REMARK 620 2 ASP A 347 OD1 50.2 REMARK 620 3 HOH A 847 O 97.3 77.6 REMARK 620 4 HOH A 915 O 81.9 118.4 72.3 REMARK 620 5 HOH A 937 O 124.3 75.2 78.4 143.2 REMARK 620 6 HOH A 988 O 80.4 83.2 156.4 129.9 83.5 REMARK 620 7 HOH A1005 O 76.4 120.0 142.5 70.2 135.8 60.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 364 OD1 REMARK 620 2 HOH A 771 O 69.2 REMARK 620 3 HOH A 911 O 130.9 135.8 REMARK 620 4 HOH A 968 O 76.2 82.2 135.8 REMARK 620 5 HOH A1036 O 142.3 137.2 55.7 81.5 REMARK 620 6 HOH A1060 O 145.3 76.2 76.9 97.7 67.2 REMARK 620 7 HOH A1117 O 77.0 85.9 66.8 153.1 122.5 102.8 REMARK 620 8 HOH A1181 O 121.0 77.7 58.2 145.3 94.3 50.2 52.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 428 OD1 REMARK 620 2 ASN A 455 OD1 87.2 REMARK 620 3 THR A 457 O 106.1 86.1 REMARK 620 4 TZD A 605 O13 87.7 173.9 92.2 REMARK 620 5 TZD A 605 O21 164.5 100.5 88.0 85.2 REMARK 620 6 HOH A 707 O 82.0 87.2 169.2 95.3 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TZD A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MPR RELATED DB: PDB REMARK 900 RELATED ID: 4MQS RELATED DB: PDB DBREF 4MPP A 1 528 UNP P20906 MDLC_PSEPU 1 528 SEQADV 4MPP TYR A 281 UNP P20906 HIS 281 ENGINEERED MUTATION SEQADV 4MPP PRO A 377 UNP P20906 THR 377 ENGINEERED MUTATION SEQADV 4MPP THR A 397 UNP P20906 PHE 397 ENGINEERED MUTATION SEQADV 4MPP ILE A 460 UNP P20906 ALA 460 ENGINEERED MUTATION SEQADV 4MPP ARG A 529 UNP P20906 EXPRESSION TAG SEQADV 4MPP SER A 530 UNP P20906 EXPRESSION TAG SEQADV 4MPP HIS A 531 UNP P20906 EXPRESSION TAG SEQADV 4MPP HIS A 532 UNP P20906 EXPRESSION TAG SEQADV 4MPP HIS A 533 UNP P20906 EXPRESSION TAG SEQADV 4MPP HIS A 534 UNP P20906 EXPRESSION TAG SEQADV 4MPP HIS A 535 UNP P20906 EXPRESSION TAG SEQADV 4MPP HIS A 536 UNP P20906 EXPRESSION TAG SEQRES 1 A 536 MET ALA SER VAL HIS GLY THR THR TYR GLU LEU LEU ARG SEQRES 2 A 536 ARG GLN GLY ILE ASP THR VAL PHE GLY ASN PRO GLY SER SEQRES 3 A 536 ASN GLU LEU PRO PHE LEU LYS ASP PHE PRO GLU ASP PHE SEQRES 4 A 536 ARG TYR ILE LEU ALA LEU GLN GLU ALA CYS VAL VAL GLY SEQRES 5 A 536 ILE ALA ASP GLY TYR ALA GLN ALA SER ARG LYS PRO ALA SEQRES 6 A 536 PHE ILE ASN LEU HIS SER ALA ALA GLY THR GLY ASN ALA SEQRES 7 A 536 MET GLY ALA LEU SER ASN ALA TRP ASN SER HIS SER PRO SEQRES 8 A 536 LEU ILE VAL THR ALA GLY GLN GLN THR ARG ALA MET ILE SEQRES 9 A 536 GLY VAL GLU ALA LEU LEU THR ASN VAL ASP ALA ALA ASN SEQRES 10 A 536 LEU PRO ARG PRO LEU VAL LYS TRP SER TYR GLU PRO ALA SEQRES 11 A 536 SER ALA ALA GLU VAL PRO HIS ALA MET SER ARG ALA ILE SEQRES 12 A 536 HIS MET ALA SER MET ALA PRO GLN GLY PRO VAL TYR LEU SEQRES 13 A 536 SER VAL PRO TYR ASP ASP TRP ASP LYS ASP ALA ASP PRO SEQRES 14 A 536 GLN SER HIS HIS LEU PHE ASP ARG HIS VAL SER SER SER SEQRES 15 A 536 VAL ARG LEU ASN ASP GLN ASP LEU ASP ILE LEU VAL LYS SEQRES 16 A 536 ALA LEU ASN SER ALA SER ASN PRO ALA ILE VAL LEU GLY SEQRES 17 A 536 PRO ASP VAL ASP ALA ALA ASN ALA ASN ALA ASP CYS VAL SEQRES 18 A 536 MET LEU ALA GLU ARG LEU LYS ALA PRO VAL TRP VAL ALA SEQRES 19 A 536 PRO SER ALA PRO ARG CYS PRO PHE PRO THR ARG HIS PRO SEQRES 20 A 536 CYS PHE ARG GLY LEU MET PRO ALA GLY ILE ALA ALA ILE SEQRES 21 A 536 SER GLN LEU LEU GLU GLY HIS ASP VAL VAL LEU VAL ILE SEQRES 22 A 536 GLY ALA PRO VAL PHE ARG TYR TYR GLN TYR ASP PRO GLY SEQRES 23 A 536 GLN TYR LEU LYS PRO GLY THR ARG LEU ILE SER VAL THR SEQRES 24 A 536 CYS ASP PRO LEU GLU ALA ALA ARG ALA PRO MET GLY ASP SEQRES 25 A 536 ALA ILE VAL ALA ASP ILE GLY ALA MET ALA SER ALA LEU SEQRES 26 A 536 ALA ASN LEU VAL GLU GLU SER SER ARG GLN LEU PRO THR SEQRES 27 A 536 ALA ALA PRO GLU PRO ALA LYS VAL ASP GLN ASP ALA GLY SEQRES 28 A 536 ARG LEU HIS PRO GLU THR VAL PHE ASP THR LEU ASN ASP SEQRES 29 A 536 MET ALA PRO GLU ASN ALA ILE TYR LEU ASN GLU SER PRO SEQRES 30 A 536 SER THR THR ALA GLN MET TRP GLN ARG LEU ASN MET ARG SEQRES 31 A 536 ASN PRO GLY SER TYR TYR THR CYS ALA ALA GLY GLY LEU SEQRES 32 A 536 GLY PHE ALA LEU PRO ALA ALA ILE GLY VAL GLN LEU ALA SEQRES 33 A 536 GLU PRO GLU ARG GLN VAL ILE ALA VAL ILE GLY ASP GLY SEQRES 34 A 536 SER ALA ASN TYR SER ILE SER ALA LEU TRP THR ALA ALA SEQRES 35 A 536 GLN TYR ASN ILE PRO THR ILE PHE VAL ILE MET ASN ASN SEQRES 36 A 536 GLY THR TYR GLY ILE LEU ARG TRP PHE ALA GLY VAL LEU SEQRES 37 A 536 GLU ALA GLU ASN VAL PRO GLY LEU ASP VAL PRO GLY ILE SEQRES 38 A 536 ASP PHE ARG ALA LEU ALA LYS GLY TYR GLY VAL GLN ALA SEQRES 39 A 536 LEU LYS ALA ASP ASN LEU GLU GLN LEU LYS GLY SER LEU SEQRES 40 A 536 GLN GLU ALA LEU SER ALA LYS GLY PRO VAL LEU ILE GLU SEQRES 41 A 536 VAL SER THR VAL SER PRO VAL LYS ARG SER HIS HIS HIS SEQRES 42 A 536 HIS HIS HIS HET CA A 601 1 HET CA A 602 1 HET NA A 603 1 HET NA A 604 1 HET TZD A 605 42 HET GOL A 606 14 HET GOL A 607 14 HET GOL A 608 14 HET CL A 609 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM TZD 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL- HETNAM 2 TZD 2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN HETNAM 3 TZD DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN TZD THIAMIN THIAZOLONE DIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 4 NA 2(NA 1+) FORMUL 6 TZD C12 H18 N4 O8 P2 S FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 CL CL 1- FORMUL 11 HOH *569(H2 O) HELIX 1 1 SER A 3 GLN A 15 1 13 HELIX 2 2 GLY A 25 ASN A 27 5 3 HELIX 3 3 GLU A 28 LYS A 33 1 6 HELIX 4 4 GLN A 46 ARG A 62 1 17 HELIX 5 5 SER A 71 ALA A 78 1 8 HELIX 6 6 ALA A 78 SER A 88 1 11 HELIX 7 7 THR A 100 GLY A 105 1 6 HELIX 8 8 ASP A 114 LEU A 118 5 5 HELIX 9 9 SER A 131 ALA A 133 5 3 HELIX 10 10 GLU A 134 MET A 148 1 15 HELIX 11 11 ASP A 161 TRP A 163 5 3 HELIX 12 12 ASP A 168 PHE A 175 5 8 HELIX 13 13 ASN A 186 ALA A 200 1 15 HELIX 14 14 GLY A 208 ALA A 214 1 7 HELIX 15 15 ALA A 216 LYS A 228 1 13 HELIX 16 16 GLY A 256 GLU A 265 1 10 HELIX 17 17 ASP A 301 ALA A 308 1 8 HELIX 18 18 ASP A 317 VAL A 329 1 13 HELIX 19 19 HIS A 354 ALA A 366 1 13 HELIX 20 20 SER A 376 SER A 378 5 3 HELIX 21 21 THR A 379 LEU A 387 1 9 HELIX 22 22 PHE A 405 GLU A 417 1 13 HELIX 23 23 ASP A 428 ASN A 432 1 5 HELIX 24 24 TYR A 433 ILE A 435 5 3 HELIX 25 25 SER A 436 ASN A 445 1 10 HELIX 26 26 TYR A 458 LEU A 468 1 11 HELIX 27 27 ASP A 482 GLY A 491 1 10 HELIX 28 28 ASN A 499 ALA A 513 1 15 SHEET 1 A 6 ARG A 40 LEU A 43 0 SHEET 2 A 6 THR A 19 GLY A 22 1 N VAL A 20 O ILE A 42 SHEET 3 A 6 ALA A 65 HIS A 70 1 O PHE A 66 N PHE A 21 SHEET 4 A 6 LEU A 92 GLN A 98 1 O ILE A 93 N ALA A 65 SHEET 5 A 6 VAL A 154 PRO A 159 1 O VAL A 154 N VAL A 94 SHEET 6 A 6 SER A 126 TYR A 127 1 N TYR A 127 O SER A 157 SHEET 1 B 6 PHE A 249 LEU A 252 0 SHEET 2 B 6 VAL A 231 VAL A 233 1 N VAL A 231 O ARG A 250 SHEET 3 B 6 ALA A 204 LEU A 207 1 N ILE A 205 O TRP A 232 SHEET 4 B 6 VAL A 269 ILE A 273 1 O LEU A 271 N ALA A 204 SHEET 5 B 6 ARG A 294 THR A 299 1 O ILE A 296 N VAL A 272 SHEET 6 B 6 ASP A 312 VAL A 315 1 O ASP A 312 N SER A 297 SHEET 1 C 6 TYR A 395 THR A 397 0 SHEET 2 C 6 ILE A 371 GLU A 375 1 N ASN A 374 O TYR A 396 SHEET 3 C 6 VAL A 422 GLY A 427 1 O VAL A 425 N LEU A 373 SHEET 4 C 6 ILE A 449 ASN A 454 1 O VAL A 451 N ALA A 424 SHEET 5 C 6 VAL A 517 SER A 522 1 O VAL A 521 N ILE A 452 SHEET 6 C 6 GLN A 493 ALA A 497 1 N ALA A 497 O GLU A 520 LINK O ASN A 117 NA NA A 604 1555 1555 2.74 LINK O LEU A 118 NA NA A 604 1555 1555 2.47 LINK O ARG A 120 NA NA A 604 1555 1555 2.47 LINK OD2 ASP A 347 NA NA A 603 1555 1555 2.43 LINK OD1 ASP A 347 NA NA A 603 1555 1555 2.71 LINK OD1 ASP A 364 CA CA A 602 1555 1555 2.39 LINK OD1 ASP A 428 CA CA A 601 1555 1555 2.26 LINK OD1 ASN A 455 CA CA A 601 1555 1555 2.24 LINK O THR A 457 CA CA A 601 1555 1555 2.25 LINK CA CA A 601 O13 TZD A 605 1555 1555 2.25 LINK CA CA A 601 O21 TZD A 605 1555 1555 2.32 LINK CA CA A 601 O HOH A 707 1555 1555 2.28 LINK CA CA A 602 O HOH A 771 1555 1555 2.38 LINK CA CA A 602 O HOH A 911 1555 1555 2.46 LINK CA CA A 602 O HOH A 968 1555 1555 2.73 LINK CA CA A 602 O HOH A1036 1555 1555 2.66 LINK CA CA A 602 O HOH A1060 1555 1555 2.46 LINK CA CA A 602 O HOH A1117 1555 1555 2.49 LINK CA CA A 602 O HOH A1181 1555 1555 2.56 LINK NA NA A 603 O HOH A 847 1555 1555 2.51 LINK NA NA A 603 O HOH A 915 1555 1555 2.46 LINK NA NA A 603 O HOH A 937 1555 1555 2.44 LINK NA NA A 603 O HOH A 988 1555 1555 2.37 LINK NA NA A 603 O HOH A1005 1555 1555 2.54 CISPEP 1 ARG A 120 PRO A 121 0 9.01 CISPEP 2 ALA A 149 PRO A 150 0 -7.22 CISPEP 3 VAL A 277 PHE A 278 0 -21.65 SITE 1 AC1 5 ASP A 428 ASN A 455 THR A 457 TZD A 605 SITE 2 AC1 5 HOH A 707 SITE 1 AC2 9 GLU A 37 ASP A 364 HOH A 771 HOH A 911 SITE 2 AC2 9 HOH A 968 HOH A1036 HOH A1060 HOH A1117 SITE 3 AC2 9 HOH A1181 SITE 1 AC3 7 ASP A 347 ALA A 416 HOH A 847 HOH A 915 SITE 2 AC3 7 HOH A 937 HOH A 988 HOH A1005 SITE 1 AC4 3 ASN A 117 LEU A 118 ARG A 120 SITE 1 AC5 23 ASN A 23 PRO A 24 GLY A 25 GLU A 47 SITE 2 AC5 23 HIS A 70 ASN A 77 PRO A 377 SER A 378 SITE 3 AC5 23 GLY A 401 LEU A 403 GLY A 427 ASP A 428 SITE 4 AC5 23 GLY A 429 SER A 430 TYR A 433 ASN A 455 SITE 5 AC5 23 THR A 457 TYR A 458 GLY A 459 ILE A 460 SITE 6 AC5 23 CA A 601 HOH A 749 HOH A1070 SITE 1 AC6 8 LEU A 43 GLN A 443 GLY A 475 LEU A 476 SITE 2 AC6 8 ASP A 477 HOH A1087 HOH A1101 HOH A1207 SITE 1 AC7 6 ALA A 196 ARG A 294 ILE A 296 ASP A 312 SITE 2 AC7 6 HOH A 785 HOH A1083 SITE 1 AC8 7 ALA A 102 GLU A 134 HIS A 137 ASP A 168 SITE 2 AC8 7 HOH A 760 HOH A 782 HOH A 987 SITE 1 AC9 3 ARG A 184 ASP A 187 HOH A 921 CRYST1 81.356 95.704 137.163 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007291 0.00000