data_4MR5 # _entry.id 4MR5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MR5 RCSB RCSB082262 WWPDB D_1000082262 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4MR3 . unspecified PDB 4mr4 . unspecified PDB 4mr6 . unspecified # _pdbx_database_status.entry_id 4MR5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-09-17 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Picaud, S.' 2 'Felletar, I.' 3 'Martin, S.' 4 'Fedorov, O.' 5 'von Delft, F.' 6 'Arrowsmith, C.H.' 7 'Edwards, A.M.' 8 'Weigelt, J.' 9 'Bountra, C.' 10 'Knapp, S.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title 'RVX-208, an inhibitor of BET transcriptional regulators with selectivity for the second bromodomain.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 19754 _citation.page_last 19759 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24248379 _citation.pdbx_database_id_DOI 10.1073/pnas.1310658110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Picaud, S.' 1 primary 'Wells, C.' 2 primary 'Felletar, I.' 3 primary 'Brotherton, D.' 4 primary 'Martin, S.' 5 primary 'Savitsky, P.' 6 primary 'Diez-Dacal, B.' 7 primary 'Philpott, M.' 8 primary 'Bountra, C.' 9 primary 'Lingard, H.' 10 primary 'Fedorov, O.' 11 primary 'Muller, S.' 12 primary 'Brennan, P.E.' 13 primary 'Knapp, S.' 14 primary 'Filippakopoulos, P.' 15 # _cell.length_a 52.220 _cell.length_b 72.008 _cell.length_c 32.039 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4MR5 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 4MR5 _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 2' 13375.410 1 ? ? 'unp residues 344-455' ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 4 non-polymer syn '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' 370.399 1 ? ? ? ? 5 water nat water 18.015 141 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'O27.1.1, Really interesting new gene 3 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_seq_one_letter_code_can ;SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 LEU n 1 6 SER n 1 7 GLU n 1 8 GLN n 1 9 LEU n 1 10 LYS n 1 11 HIS n 1 12 CYS n 1 13 ASN n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 LYS n 1 18 GLU n 1 19 LEU n 1 20 LEU n 1 21 SER n 1 22 LYS n 1 23 LYS n 1 24 HIS n 1 25 ALA n 1 26 ALA n 1 27 TYR n 1 28 ALA n 1 29 TRP n 1 30 PRO n 1 31 PHE n 1 32 TYR n 1 33 LYS n 1 34 PRO n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 SER n 1 39 ALA n 1 40 LEU n 1 41 GLY n 1 42 LEU n 1 43 HIS n 1 44 ASP n 1 45 TYR n 1 46 HIS n 1 47 ASP n 1 48 ILE n 1 49 ILE n 1 50 LYS n 1 51 HIS n 1 52 PRO n 1 53 MET n 1 54 ASP n 1 55 LEU n 1 56 SER n 1 57 THR n 1 58 VAL n 1 59 LYS n 1 60 ARG n 1 61 LYS n 1 62 MET n 1 63 GLU n 1 64 ASN n 1 65 ARG n 1 66 ASP n 1 67 TYR n 1 68 ARG n 1 69 ASP n 1 70 ALA n 1 71 GLN n 1 72 GLU n 1 73 PHE n 1 74 ALA n 1 75 ALA n 1 76 ASP n 1 77 VAL n 1 78 ARG n 1 79 LEU n 1 80 MET n 1 81 PHE n 1 82 SER n 1 83 ASN n 1 84 CYS n 1 85 TYR n 1 86 LYS n 1 87 TYR n 1 88 ASN n 1 89 PRO n 1 90 PRO n 1 91 ASP n 1 92 HIS n 1 93 ASP n 1 94 VAL n 1 95 VAL n 1 96 ALA n 1 97 MET n 1 98 ALA n 1 99 ARG n 1 100 LYS n 1 101 LEU n 1 102 GLN n 1 103 ASP n 1 104 VAL n 1 105 PHE n 1 106 GLU n 1 107 PHE n 1 108 ARG n 1 109 TYR n 1 110 ALA n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD2, KIAA9001, RING3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD2_HUMAN _struct_ref.pdbx_db_accession P25440 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFS NCYKYNPPDHDVVAMARKLQDVFEFRYAKMPD ; _struct_ref.pdbx_align_begin 344 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MR5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P25440 _struct_ref_seq.db_align_beg 344 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 455 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 344 _struct_ref_seq.pdbx_auth_seq_align_end 455 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MR5 SER A 1 ? UNP P25440 ? ? 'EXPRESSION TAG' 342 1 1 4MR5 MET A 2 ? UNP P25440 ? ? 'EXPRESSION TAG' 343 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1K0 non-polymer . '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' ? 'C20 H22 N2 O5' 370.399 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4MR5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.20M Na(formate), 0.1M BTProp, 20.0% PEG 3350 10.0% EtGly, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2013-02-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.52 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.52 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4MR5 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.63 _reflns.d_resolution_low 19.49 _reflns.number_all 15694 _reflns.number_obs 15616 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_Rsym_value 0.038 _reflns.pdbx_netI_over_sigmaI 21.8 _reflns.B_iso_Wilson_estimate 14.0 _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_obs _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_redundancy _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.63 1.72 ? 99.5 0.170 6.0 0.170 3.1 2184 ? ? ? ? 1 1 1.72 1.82 ? 99.8 0.091 8.9 0.091 4.4 2113 ? ? ? ? 2 1 1.82 1.95 ? 99.8 0.091 13.0 0.091 4.5 2003 ? ? ? ? 3 1 1.95 2.10 ? 99.8 0.059 19.1 0.059 4.6 1887 ? ? ? ? 4 1 2.10 2.31 ? 99.7 0.045 24.5 0.045 4.6 1733 ? ? ? ? 5 1 2.31 2.58 ? 99.7 0.039 28.3 0.039 4.6 1560 ? ? ? ? 6 1 2.58 3.98 ? 99.6 0.034 32.8 0.034 4.6 1414 ? ? ? ? 7 1 2.98 3.64 ? 99.4 0.028 39.9 0.028 4.6 1216 ? ? ? ? 8 1 3.64 5.15 ? 99.0 0.025 44.3 0.025 4.5 952 ? ? ? ? 9 1 5.15 19.49 ? 97.3 0.024 41.5 0.024 4.2 554 ? ? ? ? 10 1 # _refine.entry_id 4MR5 _refine.ls_d_res_high 1.6300 _refine.ls_d_res_low 19.2200 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3200 _refine.ls_number_reflns_obs 15580 _refine.ls_number_reflns_all 15687 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH TLS ADDED ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1374 _refine.ls_R_factor_R_work 0.1357 _refine.ls_wR_factor_R_work 0.1298 _refine.ls_R_factor_R_free 0.1698 _refine.ls_wR_factor_R_free 0.1581 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 780 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.8516 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model 'pdb entry 3ONI' _refine.aniso_B[1][1] 0.0800 _refine.aniso_B[2][2] -0.4800 _refine.aniso_B[3][3] 0.4000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9710 _refine.correlation_coeff_Fo_to_Fc_free 0.9520 _refine.overall_SU_R_Cruickshank_DPI 0.0731 _refine.overall_SU_R_free 0.0768 _refine.pdbx_overall_ESU_R 0.0730 _refine.pdbx_overall_ESU_R_Free 0.0770 _refine.overall_SU_ML 0.0460 _refine.overall_SU_B 2.5320 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9070 _refine.B_iso_max 87.120 _refine.B_iso_min 5.630 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 910 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 141 _refine_hist.number_atoms_total 1095 _refine_hist.d_res_high 1.6300 _refine_hist.d_res_low 19.2200 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 976 0.015 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 927 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1309 1.626 1.992 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2128 0.863 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 109 5.423 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 48 33.242 23.542 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 167 11.487 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 27.847 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 129 0.106 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1172 0.010 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 230 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 439 2.745 1.397 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 440 2.747 1.407 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 547 2.968 2.566 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6300 _refine_ls_shell.d_res_low 1.6720 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.3600 _refine_ls_shell.number_reflns_R_work 1012 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1500 _refine_ls_shell.R_factor_R_free 0.1950 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1068 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4MR5 _struct.title 'Crystal Structure of the second bromodomain of human BRD2 in complex with a quinazolinone ligand (RVX-OH)' _struct.pdbx_descriptor 'Bromodomain-containing protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MR5 _struct_keywords.pdbx_keywords 'TRANSCRIPTION/TRANSCRIPTION inhibitor' _struct_keywords.text ;BRD2, RING3, Small molecule inhibitor, RVX-OH, inhibitor complex, Structural Genomics Consortium, SGC, TRANSCRIPTION-TRANSCRIPTION inhibitor complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 5 ? LEU A 20 ? LEU A 346 LEU A 361 1 ? 16 HELX_P HELX_P2 2 SER A 21 ? LYS A 23 ? SER A 362 LYS A 364 5 ? 3 HELX_P HELX_P3 3 HIS A 24 ? TRP A 29 ? HIS A 365 TRP A 370 1 ? 6 HELX_P HELX_P4 4 PRO A 30 ? TYR A 32 ? PRO A 371 TYR A 373 5 ? 3 HELX_P HELX_P5 5 ASP A 36 ? GLY A 41 ? ASP A 377 GLY A 382 1 ? 6 HELX_P HELX_P6 6 ASP A 44 ? ILE A 49 ? ASP A 385 ILE A 390 1 ? 6 HELX_P HELX_P7 7 ASP A 54 ? ASN A 64 ? ASP A 395 ASN A 405 1 ? 11 HELX_P HELX_P8 8 ASP A 69 ? ASN A 88 ? ASP A 410 ASN A 429 1 ? 20 HELX_P HELX_P9 9 HIS A 92 ? ALA A 110 ? HIS A 433 ALA A 451 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 501' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 502' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE EDO A 503' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 504' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE DMS A 505' AC6 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE 1K0 A 506' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TYR A 27 ? TYR A 368 . ? 1_555 ? 2 AC1 6 LYS A 61 ? LYS A 402 . ? 1_556 ? 3 AC1 6 ASP A 66 ? ASP A 407 . ? 1_556 ? 4 AC1 6 MET A 97 ? MET A 438 . ? 1_555 ? 5 AC1 6 LYS A 100 ? LYS A 441 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 626 . ? 1_556 ? 7 AC2 6 TYR A 85 ? TYR A 426 . ? 2_655 ? 8 AC2 6 ARG A 99 ? ARG A 440 . ? 2_655 ? 9 AC2 6 GLN A 102 ? GLN A 443 . ? 1_555 ? 10 AC2 6 GLN A 102 ? GLN A 443 . ? 2_655 ? 11 AC2 6 ASP A 103 ? ASP A 444 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH A 657 . ? 1_555 ? 13 AC3 2 ASP A 44 ? ASP A 385 . ? 1_555 ? 14 AC3 2 TYR A 87 ? TYR A 428 . ? 1_555 ? 15 AC4 7 ILE A 48 ? ILE A 389 . ? 1_555 ? 16 AC4 7 ILE A 49 ? ILE A 390 . ? 1_555 ? 17 AC4 7 LYS A 50 ? LYS A 391 . ? 1_555 ? 18 AC4 7 HIS A 51 ? HIS A 392 . ? 1_555 ? 19 AC4 7 ASN A 83 ? ASN A 424 . ? 1_555 ? 20 AC4 7 LYS A 86 ? LYS A 427 . ? 1_555 ? 21 AC4 7 ASP A 114 ? ASP A 455 . ? 2_655 ? 22 AC5 5 TRP A 29 ? TRP A 370 . ? 1_555 ? 23 AC5 5 HIS A 92 ? HIS A 433 . ? 1_555 ? 24 AC5 5 HOH H . ? HOH A 691 . ? 1_555 ? 25 AC5 5 HOH H . ? HOH A 694 . ? 1_555 ? 26 AC5 5 HOH H . ? HOH A 695 . ? 1_555 ? 27 AC6 11 LYS A 10 ? LYS A 351 . ? 3_646 ? 28 AC6 11 TRP A 29 ? TRP A 370 . ? 1_555 ? 29 AC6 11 PRO A 30 ? PRO A 371 . ? 1_555 ? 30 AC6 11 PHE A 31 ? PHE A 372 . ? 1_555 ? 31 AC6 11 VAL A 35 ? VAL A 376 . ? 1_555 ? 32 AC6 11 LEU A 40 ? LEU A 381 . ? 1_555 ? 33 AC6 11 LEU A 42 ? LEU A 383 . ? 1_555 ? 34 AC6 11 ASN A 88 ? ASN A 429 . ? 1_555 ? 35 AC6 11 HIS A 92 ? HIS A 433 . ? 1_555 ? 36 AC6 11 HOH H . ? HOH A 604 . ? 1_555 ? 37 AC6 11 HOH H . ? HOH A 691 . ? 1_555 ? # _atom_sites.entry_id 4MR5 _atom_sites.fract_transf_matrix[1][1] 0.019150 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013887 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031212 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 342 ? ? ? A . n A 1 2 MET 2 343 ? ? ? A . n A 1 3 GLY 3 344 ? ? ? A . n A 1 4 LYS 4 345 ? ? ? A . n A 1 5 LEU 5 346 346 LEU LEU A . n A 1 6 SER 6 347 347 SER SER A . n A 1 7 GLU 7 348 348 GLU GLU A . n A 1 8 GLN 8 349 349 GLN GLN A . n A 1 9 LEU 9 350 350 LEU LEU A . n A 1 10 LYS 10 351 351 LYS LYS A . n A 1 11 HIS 11 352 352 HIS HIS A . n A 1 12 CYS 12 353 353 CYS CYS A . n A 1 13 ASN 13 354 354 ASN ASN A . n A 1 14 GLY 14 355 355 GLY GLY A . n A 1 15 ILE 15 356 356 ILE ILE A . n A 1 16 LEU 16 357 357 LEU LEU A . n A 1 17 LYS 17 358 358 LYS LYS A . n A 1 18 GLU 18 359 359 GLU GLU A . n A 1 19 LEU 19 360 360 LEU LEU A . n A 1 20 LEU 20 361 361 LEU LEU A . n A 1 21 SER 21 362 362 SER SER A . n A 1 22 LYS 22 363 363 LYS LYS A . n A 1 23 LYS 23 364 364 LYS LYS A . n A 1 24 HIS 24 365 365 HIS HIS A . n A 1 25 ALA 25 366 366 ALA ALA A . n A 1 26 ALA 26 367 367 ALA ALA A . n A 1 27 TYR 27 368 368 TYR TYR A . n A 1 28 ALA 28 369 369 ALA ALA A . n A 1 29 TRP 29 370 370 TRP TRP A . n A 1 30 PRO 30 371 371 PRO PRO A . n A 1 31 PHE 31 372 372 PHE PHE A . n A 1 32 TYR 32 373 373 TYR TYR A . n A 1 33 LYS 33 374 374 LYS LYS A . n A 1 34 PRO 34 375 375 PRO PRO A . n A 1 35 VAL 35 376 376 VAL VAL A . n A 1 36 ASP 36 377 377 ASP ASP A . n A 1 37 ALA 37 378 378 ALA ALA A . n A 1 38 SER 38 379 379 SER SER A . n A 1 39 ALA 39 380 380 ALA ALA A . n A 1 40 LEU 40 381 381 LEU LEU A . n A 1 41 GLY 41 382 382 GLY GLY A . n A 1 42 LEU 42 383 383 LEU LEU A . n A 1 43 HIS 43 384 384 HIS HIS A . n A 1 44 ASP 44 385 385 ASP ASP A . n A 1 45 TYR 45 386 386 TYR TYR A . n A 1 46 HIS 46 387 387 HIS HIS A . n A 1 47 ASP 47 388 388 ASP ASP A . n A 1 48 ILE 48 389 389 ILE ILE A . n A 1 49 ILE 49 390 390 ILE ILE A . n A 1 50 LYS 50 391 391 LYS LYS A . n A 1 51 HIS 51 392 392 HIS HIS A . n A 1 52 PRO 52 393 393 PRO PRO A . n A 1 53 MET 53 394 394 MET MET A . n A 1 54 ASP 54 395 395 ASP ASP A . n A 1 55 LEU 55 396 396 LEU LEU A . n A 1 56 SER 56 397 397 SER SER A . n A 1 57 THR 57 398 398 THR THR A . n A 1 58 VAL 58 399 399 VAL VAL A . n A 1 59 LYS 59 400 400 LYS LYS A . n A 1 60 ARG 60 401 401 ARG ARG A . n A 1 61 LYS 61 402 402 LYS LYS A . n A 1 62 MET 62 403 403 MET MET A . n A 1 63 GLU 63 404 404 GLU GLU A . n A 1 64 ASN 64 405 405 ASN ASN A . n A 1 65 ARG 65 406 406 ARG ARG A . n A 1 66 ASP 66 407 407 ASP ASP A . n A 1 67 TYR 67 408 408 TYR TYR A . n A 1 68 ARG 68 409 409 ARG ARG A . n A 1 69 ASP 69 410 410 ASP ASP A . n A 1 70 ALA 70 411 411 ALA ALA A . n A 1 71 GLN 71 412 412 GLN GLN A . n A 1 72 GLU 72 413 413 GLU GLU A . n A 1 73 PHE 73 414 414 PHE PHE A . n A 1 74 ALA 74 415 415 ALA ALA A . n A 1 75 ALA 75 416 416 ALA ALA A . n A 1 76 ASP 76 417 417 ASP ASP A . n A 1 77 VAL 77 418 418 VAL VAL A . n A 1 78 ARG 78 419 419 ARG ARG A . n A 1 79 LEU 79 420 420 LEU LEU A . n A 1 80 MET 80 421 421 MET MET A . n A 1 81 PHE 81 422 422 PHE PHE A . n A 1 82 SER 82 423 423 SER SER A . n A 1 83 ASN 83 424 424 ASN ASN A . n A 1 84 CYS 84 425 425 CYS CYS A . n A 1 85 TYR 85 426 426 TYR TYR A . n A 1 86 LYS 86 427 427 LYS LYS A . n A 1 87 TYR 87 428 428 TYR TYR A . n A 1 88 ASN 88 429 429 ASN ASN A . n A 1 89 PRO 89 430 430 PRO PRO A . n A 1 90 PRO 90 431 431 PRO PRO A . n A 1 91 ASP 91 432 432 ASP ASP A . n A 1 92 HIS 92 433 433 HIS HIS A . n A 1 93 ASP 93 434 434 ASP ASP A . n A 1 94 VAL 94 435 435 VAL VAL A . n A 1 95 VAL 95 436 436 VAL VAL A . n A 1 96 ALA 96 437 437 ALA ALA A . n A 1 97 MET 97 438 438 MET MET A . n A 1 98 ALA 98 439 439 ALA ALA A . n A 1 99 ARG 99 440 440 ARG ARG A . n A 1 100 LYS 100 441 441 LYS LYS A . n A 1 101 LEU 101 442 442 LEU LEU A . n A 1 102 GLN 102 443 443 GLN GLN A . n A 1 103 ASP 103 444 444 ASP ASP A . n A 1 104 VAL 104 445 445 VAL VAL A . n A 1 105 PHE 105 446 446 PHE PHE A . n A 1 106 GLU 106 447 447 GLU GLU A . n A 1 107 PHE 107 448 448 PHE PHE A . n A 1 108 ARG 108 449 449 ARG ARG A . n A 1 109 TYR 109 450 450 TYR TYR A . n A 1 110 ALA 110 451 451 ALA ALA A . n A 1 111 LYS 111 452 452 LYS LYS A . n A 1 112 MET 112 453 453 MET MET A . n A 1 113 PRO 113 454 454 PRO PRO A . n A 1 114 ASP 114 455 455 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 741 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-27 2 'Structure model' 1 1 2014-01-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.630 _diffrn_reflns.pdbx_d_res_low 19.210 _diffrn_reflns.pdbx_number_obs 15616 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.038 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 14.60 _diffrn_reflns.pdbx_redundancy 4.30 _diffrn_reflns.pdbx_percent_possible_obs 99.50 _diffrn_reflns.number 67544 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.15 19.21 ? ? 0.024 0.024 ? 4.20 97.30 1 3.64 5.15 ? ? 0.025 0.025 ? 4.50 100.00 1 2.98 3.64 ? ? 0.028 0.028 ? 4.60 99.90 1 2.58 2.98 ? ? 0.034 0.034 ? 4.60 100.00 1 2.31 2.58 ? ? 0.039 0.039 ? 4.60 99.80 1 2.10 2.31 ? ? 0.045 0.045 ? 4.60 99.90 1 1.95 2.10 ? ? 0.059 0.059 ? 4.60 99.90 1 1.82 1.95 ? ? 0.091 0.091 ? 4.50 100.00 1 1.72 1.82 ? ? 0.133 0.133 ? 4.40 99.80 1 1.63 1.72 ? ? 0.170 0.170 ? 3.10 97.50 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 36.3254 _pdbx_refine_tls.origin_y 2.6082 _pdbx_refine_tls.origin_z 16.9172 _pdbx_refine_tls.T[1][1] 0.0387 _pdbx_refine_tls.T[2][2] 0.0384 _pdbx_refine_tls.T[3][3] 0.0308 _pdbx_refine_tls.T[1][2] 0.0018 _pdbx_refine_tls.T[1][3] -0.0025 _pdbx_refine_tls.T[2][3] -0.0012 _pdbx_refine_tls.L[1][1] 0.2470 _pdbx_refine_tls.L[2][2] 0.6253 _pdbx_refine_tls.L[3][3] 0.0304 _pdbx_refine_tls.L[1][2] 0.0334 _pdbx_refine_tls.L[1][3] 0.0519 _pdbx_refine_tls.L[2][3] -0.1005 _pdbx_refine_tls.S[1][1] -0.0210 _pdbx_refine_tls.S[2][2] 0.0271 _pdbx_refine_tls.S[3][3] -0.0061 _pdbx_refine_tls.S[1][2] -0.0080 _pdbx_refine_tls.S[1][3] -0.0089 _pdbx_refine_tls.S[2][3] -0.0048 _pdbx_refine_tls.S[2][1] -0.0178 _pdbx_refine_tls.S[3][1] -0.0009 _pdbx_refine_tls.S[3][2] -0.0033 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 346 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 455 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MR.entry_id 4MR5 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 46.600 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 19.210 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 19.210 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.21 2013/01/04 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 StructureStudio . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 347 ? ? O A HOH 735 ? ? 2.11 2 1 O A HOH 675 ? ? O A HOH 682 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 740 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 740 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A 1K0 506 ? O4 ? G 1K0 1 O4 2 1 N 1 A 1K0 506 ? C14 ? G 1K0 1 C14 3 1 N 1 A 1K0 506 ? C15 ? G 1K0 1 C15 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 342 ? A SER 1 2 1 Y 1 A MET 343 ? A MET 2 3 1 Y 1 A GLY 344 ? A GLY 3 4 1 Y 1 A LYS 345 ? A LYS 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'DIMETHYL SULFOXIDE' DMS 4 '2-[4-(2-hydroxyethoxy)-3,5-dimethylphenyl]-5,7-dimethoxyquinazolin-4(3H)-one' 1K0 5 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 501 1 EDO EDO A . C 2 EDO 1 502 2 EDO EDO A . D 2 EDO 1 503 3 EDO EDO A . E 2 EDO 1 504 4 EDO EDO A . F 3 DMS 1 505 1 DMS DMS A . G 4 1K0 1 506 1 1K0 DRG A . H 5 HOH 1 601 1 HOH HOH A . H 5 HOH 2 602 2 HOH HOH A . H 5 HOH 3 603 3 HOH HOH A . H 5 HOH 4 604 4 HOH HOH A . H 5 HOH 5 605 5 HOH HOH A . H 5 HOH 6 606 6 HOH HOH A . H 5 HOH 7 607 7 HOH HOH A . H 5 HOH 8 608 8 HOH HOH A . H 5 HOH 9 609 9 HOH HOH A . H 5 HOH 10 610 10 HOH HOH A . H 5 HOH 11 611 11 HOH HOH A . H 5 HOH 12 612 12 HOH HOH A . H 5 HOH 13 613 13 HOH HOH A . H 5 HOH 14 614 14 HOH HOH A . H 5 HOH 15 615 15 HOH HOH A . H 5 HOH 16 616 16 HOH HOH A . H 5 HOH 17 617 17 HOH HOH A . H 5 HOH 18 618 18 HOH HOH A . H 5 HOH 19 619 19 HOH HOH A . H 5 HOH 20 620 20 HOH HOH A . H 5 HOH 21 621 21 HOH HOH A . H 5 HOH 22 622 22 HOH HOH A . H 5 HOH 23 623 23 HOH HOH A . H 5 HOH 24 624 24 HOH HOH A . H 5 HOH 25 625 25 HOH HOH A . H 5 HOH 26 626 26 HOH HOH A . H 5 HOH 27 627 27 HOH HOH A . H 5 HOH 28 628 28 HOH HOH A . H 5 HOH 29 629 29 HOH HOH A . H 5 HOH 30 630 30 HOH HOH A . H 5 HOH 31 631 31 HOH HOH A . H 5 HOH 32 632 32 HOH HOH A . H 5 HOH 33 633 33 HOH HOH A . H 5 HOH 34 634 34 HOH HOH A . H 5 HOH 35 635 35 HOH HOH A . H 5 HOH 36 636 36 HOH HOH A . H 5 HOH 37 637 37 HOH HOH A . H 5 HOH 38 638 38 HOH HOH A . H 5 HOH 39 639 39 HOH HOH A . H 5 HOH 40 640 40 HOH HOH A . H 5 HOH 41 641 41 HOH HOH A . H 5 HOH 42 642 42 HOH HOH A . H 5 HOH 43 643 43 HOH HOH A . H 5 HOH 44 644 44 HOH HOH A . H 5 HOH 45 645 45 HOH HOH A . H 5 HOH 46 646 46 HOH HOH A . H 5 HOH 47 647 47 HOH HOH A . H 5 HOH 48 648 48 HOH HOH A . H 5 HOH 49 649 49 HOH HOH A . H 5 HOH 50 650 50 HOH HOH A . H 5 HOH 51 651 51 HOH HOH A . H 5 HOH 52 652 52 HOH HOH A . H 5 HOH 53 653 53 HOH HOH A . H 5 HOH 54 654 54 HOH HOH A . H 5 HOH 55 655 55 HOH HOH A . H 5 HOH 56 656 56 HOH HOH A . H 5 HOH 57 657 57 HOH HOH A . H 5 HOH 58 658 58 HOH HOH A . H 5 HOH 59 659 59 HOH HOH A . H 5 HOH 60 660 60 HOH HOH A . H 5 HOH 61 661 61 HOH HOH A . H 5 HOH 62 662 62 HOH HOH A . H 5 HOH 63 663 63 HOH HOH A . H 5 HOH 64 664 64 HOH HOH A . H 5 HOH 65 665 65 HOH HOH A . H 5 HOH 66 666 66 HOH HOH A . H 5 HOH 67 667 67 HOH HOH A . H 5 HOH 68 668 68 HOH HOH A . H 5 HOH 69 669 69 HOH HOH A . H 5 HOH 70 670 70 HOH HOH A . H 5 HOH 71 671 71 HOH HOH A . H 5 HOH 72 672 72 HOH HOH A . H 5 HOH 73 673 73 HOH HOH A . H 5 HOH 74 674 74 HOH HOH A . H 5 HOH 75 675 75 HOH HOH A . H 5 HOH 76 676 76 HOH HOH A . H 5 HOH 77 677 77 HOH HOH A . H 5 HOH 78 678 78 HOH HOH A . H 5 HOH 79 679 79 HOH HOH A . H 5 HOH 80 680 80 HOH HOH A . H 5 HOH 81 681 81 HOH HOH A . H 5 HOH 82 682 82 HOH HOH A . H 5 HOH 83 683 83 HOH HOH A . H 5 HOH 84 684 84 HOH HOH A . H 5 HOH 85 685 85 HOH HOH A . H 5 HOH 86 686 86 HOH HOH A . H 5 HOH 87 687 87 HOH HOH A . H 5 HOH 88 688 88 HOH HOH A . H 5 HOH 89 689 89 HOH HOH A . H 5 HOH 90 690 90 HOH HOH A . H 5 HOH 91 691 91 HOH HOH A . H 5 HOH 92 692 92 HOH HOH A . H 5 HOH 93 693 93 HOH HOH A . H 5 HOH 94 694 94 HOH HOH A . H 5 HOH 95 695 95 HOH HOH A . H 5 HOH 96 696 96 HOH HOH A . H 5 HOH 97 697 97 HOH HOH A . H 5 HOH 98 698 98 HOH HOH A . H 5 HOH 99 699 100 HOH HOH A . H 5 HOH 100 700 101 HOH HOH A . H 5 HOH 101 701 102 HOH HOH A . H 5 HOH 102 702 103 HOH HOH A . H 5 HOH 103 703 104 HOH HOH A . H 5 HOH 104 704 105 HOH HOH A . H 5 HOH 105 705 106 HOH HOH A . H 5 HOH 106 706 107 HOH HOH A . H 5 HOH 107 707 108 HOH HOH A . H 5 HOH 108 708 109 HOH HOH A . H 5 HOH 109 709 110 HOH HOH A . H 5 HOH 110 710 111 HOH HOH A . H 5 HOH 111 711 112 HOH HOH A . H 5 HOH 112 712 113 HOH HOH A . H 5 HOH 113 713 114 HOH HOH A . H 5 HOH 114 714 115 HOH HOH A . H 5 HOH 115 715 116 HOH HOH A . H 5 HOH 116 716 117 HOH HOH A . H 5 HOH 117 717 118 HOH HOH A . H 5 HOH 118 718 119 HOH HOH A . H 5 HOH 119 719 120 HOH HOH A . H 5 HOH 120 720 121 HOH HOH A . H 5 HOH 121 721 122 HOH HOH A . H 5 HOH 122 722 123 HOH HOH A . H 5 HOH 123 723 124 HOH HOH A . H 5 HOH 124 724 125 HOH HOH A . H 5 HOH 125 725 126 HOH HOH A . H 5 HOH 126 726 127 HOH HOH A . H 5 HOH 127 727 128 HOH HOH A . H 5 HOH 128 728 129 HOH HOH A . H 5 HOH 129 729 130 HOH HOH A . H 5 HOH 130 730 131 HOH HOH A . H 5 HOH 131 731 132 HOH HOH A . H 5 HOH 132 732 133 HOH HOH A . H 5 HOH 133 733 134 HOH HOH A . H 5 HOH 134 734 135 HOH HOH A . H 5 HOH 135 735 136 HOH HOH A . H 5 HOH 136 736 137 HOH HOH A . H 5 HOH 137 737 138 HOH HOH A . H 5 HOH 138 738 139 HOH HOH A . H 5 HOH 139 739 140 HOH HOH A . H 5 HOH 140 740 141 HOH HOH A . H 5 HOH 141 741 142 HOH HOH A . #