data_4MRD # _entry.id 4MRD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MRD RCSB RCSB082270 WWPDB D_1000082270 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4MRE . unspecified PDB 4MRF . unspecified PDB 4MRG . unspecified PDB 4MRH . unspecified PDB 4NP3 . unspecified PDB 4NP2 . unspecified # _pdbx_database_status.entry_id 4MRD _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-09-17 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, L.K.' 1 'Finzel, B.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Fragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors. ; J.Med.Chem. 57 2714 2725 2014 JMCMAR US 0022-2623 0151 ? 24606063 10.1021/jm5000276 1 'Structures of the Cd44-hyaluronan complex provide insight into a fundamental carbohydrate-protein interaction.' Nat.Struct.Mol.Biol. 14 234 239 2007 ? US 1545-9993 ? ? 17293874 10.1038/nsmb1201 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, L.K.' 1 ? primary 'Finzel, B.C.' 2 ? 1 'Banerji, S.' 3 ? 1 'Wright, A.J.' 4 ? 1 'Noble, M.' 5 ? 1 'Mahoney, D.J.' 6 ? 1 'Campbell, I.D.' 7 ? 1 'Day, A.J.' 8 ? 1 'Jackson, D.G.' 9 ? # _cell.entry_id 4MRD _cell.length_a 30.620 _cell.length_b 82.280 _cell.length_c 32.520 _cell.angle_alpha 90.00 _cell.angle_beta 117.92 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4MRD _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CD44 antigen' 16610.502 1 ? ? 'HYALURONAN BINDING DOMAIN, RESIDUES 23-171' ? 2 branched man ;beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 776.648 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 10 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Extracellular matrix receptor III, ECMR-III, GP90 lymphocyte homing/adhesion receptor, HUTCH-I, Hermes antigen, Hyaluronate receptor, Lymphocyte antigen 24, Ly-24, Phagocytic glycoprotein 1, PGP-1, Phagocytic glycoprotein I, PGP-I ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAAN HTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI ; _entity_poly.pdbx_seq_one_letter_code_can ;QIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAAN HTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 ASP n 1 4 LEU n 1 5 ASN n 1 6 VAL n 1 7 THR n 1 8 CYS n 1 9 ARG n 1 10 TYR n 1 11 ALA n 1 12 GLY n 1 13 VAL n 1 14 PHE n 1 15 HIS n 1 16 VAL n 1 17 GLU n 1 18 LYS n 1 19 ASN n 1 20 GLY n 1 21 ARG n 1 22 TYR n 1 23 SER n 1 24 ILE n 1 25 SER n 1 26 ARG n 1 27 THR n 1 28 GLU n 1 29 ALA n 1 30 ALA n 1 31 ASP n 1 32 LEU n 1 33 CYS n 1 34 GLN n 1 35 ALA n 1 36 PHE n 1 37 ASN n 1 38 SER n 1 39 THR n 1 40 LEU n 1 41 PRO n 1 42 THR n 1 43 MET n 1 44 ASP n 1 45 GLN n 1 46 MET n 1 47 LYS n 1 48 LEU n 1 49 ALA n 1 50 LEU n 1 51 SER n 1 52 LYS n 1 53 GLY n 1 54 PHE n 1 55 GLU n 1 56 THR n 1 57 CYS n 1 58 ARG n 1 59 TYR n 1 60 GLY n 1 61 PHE n 1 62 ILE n 1 63 GLU n 1 64 GLY n 1 65 ASN n 1 66 VAL n 1 67 VAL n 1 68 ILE n 1 69 PRO n 1 70 ARG n 1 71 ILE n 1 72 HIS n 1 73 PRO n 1 74 ASN n 1 75 ALA n 1 76 ILE n 1 77 CYS n 1 78 ALA n 1 79 ALA n 1 80 ASN n 1 81 HIS n 1 82 THR n 1 83 GLY n 1 84 VAL n 1 85 TYR n 1 86 ILE n 1 87 LEU n 1 88 VAL n 1 89 THR n 1 90 SER n 1 91 ASN n 1 92 THR n 1 93 SER n 1 94 HIS n 1 95 TYR n 1 96 ASP n 1 97 THR n 1 98 TYR n 1 99 CYS n 1 100 PHE n 1 101 ASN n 1 102 ALA n 1 103 SER n 1 104 ALA n 1 105 PRO n 1 106 PRO n 1 107 GLU n 1 108 GLU n 1 109 ASP n 1 110 CYS n 1 111 THR n 1 112 SER n 1 113 VAL n 1 114 THR n 1 115 ASP n 1 116 LEU n 1 117 PRO n 1 118 ASN n 1 119 SER n 1 120 PHE n 1 121 ASP n 1 122 GLY n 1 123 PRO n 1 124 VAL n 1 125 THR n 1 126 ILE n 1 127 THR n 1 128 ILE n 1 129 VAL n 1 130 ASN n 1 131 ARG n 1 132 ASP n 1 133 GLY n 1 134 THR n 1 135 ARG n 1 136 TYR n 1 137 SER n 1 138 LYS n 1 139 LYS n 1 140 GLY n 1 141 GLU n 1 142 TYR n 1 143 ARG n 1 144 THR n 1 145 HIS n 1 146 GLN n 1 147 GLU n 1 148 ASP n 1 149 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Cd44, Cd44 Ly-24, Ly-24' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD44_MOUSE _struct_ref.pdbx_db_accession P15379 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAAN HTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MRD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 149 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15379 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 171 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 25 _struct_ref_seq.pdbx_auth_seq_align_end 173 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BDP 'D-saccharide, beta linking' . 'beta-D-glucopyranuronic acid' 'D-GLUCURONIC ACID' 'C6 H10 O7' 194.139 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4MRD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '30% PEG MME 5000, 100 mM MES, 200mM (NH4)2SO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2013-01-29 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock monochromator Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4MRD _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 41.14 _reflns.d_resolution_high 2.55 _reflns.number_obs 17738 _reflns.number_all 17746 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.123 _reflns.pdbx_Rsym_value 0.143 _reflns.pdbx_netI_over_sigmaI 11.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.55 _reflns_shell.d_res_low 2.61 _reflns_shell.percent_possible_all 94.6 _reflns_shell.Rmerge_I_obs 0.391 _reflns_shell.pdbx_Rsym_value 0.462 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 3.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4MRD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4355 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.14 _refine.ls_d_res_high 2.55 _refine.ls_percent_reflns_obs 99.61 _refine.ls_R_factor_obs 0.19029 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18732 _refine.ls_R_factor_R_free 0.24496 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 237 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.926 _refine.correlation_coeff_Fo_to_Fc_free 0.839 _refine.B_iso_mean 14.022 _refine.aniso_B[1][1] 0.56 _refine.aniso_B[2][2] -0.31 _refine.aniso_B[3][3] -0.54 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.31 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.338 _refine.overall_SU_ML 0.250 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.630 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1163 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 57 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 1230 _refine_hist.d_res_high 2.55 _refine_hist.d_res_low 41.14 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 1250 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.372 1.991 ? 1709 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.898 5.000 ? 148 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.037 23.966 ? 58 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.425 15.000 ? 187 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.087 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.080 0.200 ? 201 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 938 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.501 1.500 ? 742 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.998 2.000 ? 1208 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.459 3.000 ? 508 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.459 4.500 ? 501 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.550 _refine_ls_shell.d_res_low 2.616 _refine_ls_shell.number_reflns_R_work 253 _refine_ls_shell.R_factor_R_work 0.224 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.393 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 12 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4MRD _struct.title 'Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule' _struct.pdbx_descriptor 'CD44 antigen' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MRD _struct_keywords.text 'Link module, Cell receptor, Hyaluronan binding, Cell surface, Cell adhesion' _struct_keywords.pdbx_keywords 'CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 25 ? PHE A 36 ? SER A 49 PHE A 60 1 ? 12 HELX_P HELX_P2 2 THR A 42 ? LYS A 52 ? THR A 66 LYS A 76 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 32 A CYS 134 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf2 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 57 A CYS 123 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 57 SG ? ? ? 1_555 A CYS 77 SG ? ? A CYS 81 A CYS 101 1_555 ? ? ? ? ? ? ? 2.033 ? ? covale1 covale both ? B NAG . O3 ? ? ? 1_555 B BDP . C1 ? ? B NAG 1 B BDP 2 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale2 covale both ? B BDP . O4 ? ? ? 1_555 B NAG . C1 ? ? B BDP 2 B NAG 3 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale3 covale both ? B NAG . O3 ? ? ? 1_555 B BDP . C1 ? ? B NAG 3 B BDP 4 1_555 ? ? ? ? ? ? ? 1.437 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 83 ? ILE A 86 ? GLY A 107 ILE A 110 A 2 VAL A 66 ? ARG A 70 ? VAL A 90 ARG A 94 A 3 GLY A 60 ? PHE A 61 ? GLY A 84 PHE A 85 A 4 ASP A 96 ? PHE A 100 ? ASP A 120 PHE A 124 A 5 VAL A 13 ? LYS A 18 ? VAL A 37 LYS A 42 A 6 ILE A 2 ? VAL A 6 ? ILE A 26 VAL A 30 A 7 PHE A 120 ? VAL A 129 ? PHE A 144 VAL A 153 A 8 ARG A 135 ? GLU A 141 ? ARG A 159 GLU A 165 B 1 ARG A 9 ? TYR A 10 ? ARG A 33 TYR A 34 B 2 GLU A 108 ? ASP A 109 ? GLU A 132 ASP A 133 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 83 ? O GLY A 107 N ARG A 70 ? N ARG A 94 A 2 3 O VAL A 67 ? O VAL A 91 N GLY A 60 ? N GLY A 84 A 3 4 N PHE A 61 ? N PHE A 85 O ASP A 96 ? O ASP A 120 A 4 5 O THR A 97 ? O THR A 121 N VAL A 16 ? N VAL A 40 A 5 6 O GLU A 17 ? O GLU A 41 N ASN A 5 ? N ASN A 29 A 6 7 N ILE A 2 ? N ILE A 26 O THR A 127 ? O THR A 151 A 7 8 N ILE A 126 ? N ILE A 150 O LYS A 138 ? O LYS A 162 B 1 2 N ARG A 9 ? N ARG A 33 O ASP A 109 ? O ASP A 133 # _atom_sites.entry_id 4MRD _atom_sites.fract_transf_matrix[1][1] 0.032658 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.017306 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012154 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034801 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 25 25 GLN GLN A . n A 1 2 ILE 2 26 26 ILE ILE A . n A 1 3 ASP 3 27 27 ASP ASP A . n A 1 4 LEU 4 28 28 LEU LEU A . n A 1 5 ASN 5 29 29 ASN ASN A . n A 1 6 VAL 6 30 30 VAL VAL A . n A 1 7 THR 7 31 31 THR THR A . n A 1 8 CYS 8 32 32 CYS CYS A . n A 1 9 ARG 9 33 33 ARG ARG A . n A 1 10 TYR 10 34 34 TYR TYR A . n A 1 11 ALA 11 35 35 ALA ALA A . n A 1 12 GLY 12 36 36 GLY GLY A . n A 1 13 VAL 13 37 37 VAL VAL A . n A 1 14 PHE 14 38 38 PHE PHE A . n A 1 15 HIS 15 39 39 HIS HIS A . n A 1 16 VAL 16 40 40 VAL VAL A . n A 1 17 GLU 17 41 41 GLU GLU A . n A 1 18 LYS 18 42 42 LYS LYS A . n A 1 19 ASN 19 43 43 ASN ASN A . n A 1 20 GLY 20 44 44 GLY GLY A . n A 1 21 ARG 21 45 45 ARG ARG A . n A 1 22 TYR 22 46 46 TYR TYR A . n A 1 23 SER 23 47 47 SER SER A . n A 1 24 ILE 24 48 48 ILE ILE A . n A 1 25 SER 25 49 49 SER SER A . n A 1 26 ARG 26 50 50 ARG ARG A . n A 1 27 THR 27 51 51 THR THR A . n A 1 28 GLU 28 52 52 GLU GLU A . n A 1 29 ALA 29 53 53 ALA ALA A . n A 1 30 ALA 30 54 54 ALA ALA A . n A 1 31 ASP 31 55 55 ASP ASP A . n A 1 32 LEU 32 56 56 LEU LEU A . n A 1 33 CYS 33 57 57 CYS CYS A . n A 1 34 GLN 34 58 58 GLN GLN A . n A 1 35 ALA 35 59 59 ALA ALA A . n A 1 36 PHE 36 60 60 PHE PHE A . n A 1 37 ASN 37 61 61 ASN ASN A . n A 1 38 SER 38 62 62 SER SER A . n A 1 39 THR 39 63 63 THR THR A . n A 1 40 LEU 40 64 64 LEU LEU A . n A 1 41 PRO 41 65 65 PRO PRO A . n A 1 42 THR 42 66 66 THR THR A . n A 1 43 MET 43 67 67 MET MET A . n A 1 44 ASP 44 68 68 ASP ASP A . n A 1 45 GLN 45 69 69 GLN GLN A . n A 1 46 MET 46 70 70 MET MET A . n A 1 47 LYS 47 71 71 LYS LYS A . n A 1 48 LEU 48 72 72 LEU LEU A . n A 1 49 ALA 49 73 73 ALA ALA A . n A 1 50 LEU 50 74 74 LEU LEU A . n A 1 51 SER 51 75 75 SER SER A . n A 1 52 LYS 52 76 76 LYS LYS A . n A 1 53 GLY 53 77 77 GLY GLY A . n A 1 54 PHE 54 78 78 PHE PHE A . n A 1 55 GLU 55 79 79 GLU GLU A . n A 1 56 THR 56 80 80 THR THR A . n A 1 57 CYS 57 81 81 CYS CYS A . n A 1 58 ARG 58 82 82 ARG ARG A . n A 1 59 TYR 59 83 83 TYR TYR A . n A 1 60 GLY 60 84 84 GLY GLY A . n A 1 61 PHE 61 85 85 PHE PHE A . n A 1 62 ILE 62 86 86 ILE ILE A . n A 1 63 GLU 63 87 87 GLU GLU A . n A 1 64 GLY 64 88 88 GLY GLY A . n A 1 65 ASN 65 89 89 ASN ASN A . n A 1 66 VAL 66 90 90 VAL VAL A . n A 1 67 VAL 67 91 91 VAL VAL A . n A 1 68 ILE 68 92 92 ILE ILE A . n A 1 69 PRO 69 93 93 PRO PRO A . n A 1 70 ARG 70 94 94 ARG ARG A . n A 1 71 ILE 71 95 95 ILE ILE A . n A 1 72 HIS 72 96 96 HIS HIS A . n A 1 73 PRO 73 97 97 PRO PRO A . n A 1 74 ASN 74 98 98 ASN ASN A . n A 1 75 ALA 75 99 99 ALA ALA A . n A 1 76 ILE 76 100 100 ILE ILE A . n A 1 77 CYS 77 101 101 CYS CYS A . n A 1 78 ALA 78 102 102 ALA ALA A . n A 1 79 ALA 79 103 103 ALA ALA A . n A 1 80 ASN 80 104 104 ASN ASN A . n A 1 81 HIS 81 105 105 HIS HIS A . n A 1 82 THR 82 106 106 THR THR A . n A 1 83 GLY 83 107 107 GLY GLY A . n A 1 84 VAL 84 108 108 VAL VAL A . n A 1 85 TYR 85 109 109 TYR TYR A . n A 1 86 ILE 86 110 110 ILE ILE A . n A 1 87 LEU 87 111 111 LEU LEU A . n A 1 88 VAL 88 112 112 VAL VAL A . n A 1 89 THR 89 113 113 THR THR A . n A 1 90 SER 90 114 114 SER SER A . n A 1 91 ASN 91 115 115 ASN ASN A . n A 1 92 THR 92 116 116 THR THR A . n A 1 93 SER 93 117 117 SER SER A . n A 1 94 HIS 94 118 118 HIS HIS A . n A 1 95 TYR 95 119 119 TYR TYR A . n A 1 96 ASP 96 120 120 ASP ASP A . n A 1 97 THR 97 121 121 THR THR A . n A 1 98 TYR 98 122 122 TYR TYR A . n A 1 99 CYS 99 123 123 CYS CYS A . n A 1 100 PHE 100 124 124 PHE PHE A . n A 1 101 ASN 101 125 125 ASN ASN A . n A 1 102 ALA 102 126 126 ALA ALA A . n A 1 103 SER 103 127 127 SER SER A . n A 1 104 ALA 104 128 128 ALA ALA A . n A 1 105 PRO 105 129 129 PRO PRO A . n A 1 106 PRO 106 130 130 PRO PRO A . n A 1 107 GLU 107 131 131 GLU GLU A . n A 1 108 GLU 108 132 132 GLU GLU A . n A 1 109 ASP 109 133 133 ASP ASP A . n A 1 110 CYS 110 134 134 CYS CYS A . n A 1 111 THR 111 135 135 THR THR A . n A 1 112 SER 112 136 136 SER SER A . n A 1 113 VAL 113 137 137 VAL VAL A . n A 1 114 THR 114 138 138 THR THR A . n A 1 115 ASP 115 139 139 ASP ASP A . n A 1 116 LEU 116 140 140 LEU LEU A . n A 1 117 PRO 117 141 141 PRO PRO A . n A 1 118 ASN 118 142 142 ASN ASN A . n A 1 119 SER 119 143 143 SER SER A . n A 1 120 PHE 120 144 144 PHE PHE A . n A 1 121 ASP 121 145 145 ASP ASP A . n A 1 122 GLY 122 146 146 GLY GLY A . n A 1 123 PRO 123 147 147 PRO PRO A . n A 1 124 VAL 124 148 148 VAL VAL A . n A 1 125 THR 125 149 149 THR THR A . n A 1 126 ILE 126 150 150 ILE ILE A . n A 1 127 THR 127 151 151 THR THR A . n A 1 128 ILE 128 152 152 ILE ILE A . n A 1 129 VAL 129 153 153 VAL VAL A . n A 1 130 ASN 130 154 154 ASN ASN A . n A 1 131 ARG 131 155 155 ARG ARG A . n A 1 132 ASP 132 156 156 ASP ASP A . n A 1 133 GLY 133 157 157 GLY GLY A . n A 1 134 THR 134 158 158 THR THR A . n A 1 135 ARG 135 159 159 ARG ARG A . n A 1 136 TYR 136 160 160 TYR TYR A . n A 1 137 SER 137 161 161 SER SER A . n A 1 138 LYS 138 162 162 LYS LYS A . n A 1 139 LYS 139 163 163 LYS LYS A . n A 1 140 GLY 140 164 164 GLY GLY A . n A 1 141 GLU 141 165 165 GLU GLU A . n A 1 142 TYR 142 166 166 TYR TYR A . n A 1 143 ARG 143 167 167 ARG ARG A . n A 1 144 THR 144 168 168 THR THR A . n A 1 145 HIS 145 169 169 HIS HIS A . n A 1 146 GLN 146 170 170 GLN GLN A . n A 1 147 GLU 147 171 171 GLU GLU A . n A 1 148 ASP 148 172 172 ASP ASP A . n A 1 149 ILE 149 173 173 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 205 1 SO4 SO4 A . D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 4 HOH HOH A . D 4 HOH 5 305 5 HOH HOH A . D 4 HOH 6 306 6 HOH HOH A . D 4 HOH 7 307 7 HOH HOH A . D 4 HOH 8 308 8 HOH HOH A . D 4 HOH 9 309 9 HOH HOH A . D 4 HOH 10 310 10 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-16 2 'Structure model' 1 1 2015-01-28 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 14 3 'Structure model' struct_asym 15 3 'Structure model' struct_conn 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_asym_id' 18 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_seq_id' 19 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_seq_id' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_phasing_MR.entry_id 4MRD _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 35.590 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.550 _pdbx_phasing_MR.d_res_low_rotation 19.840 _pdbx_phasing_MR.d_res_high_translation 2.550 _pdbx_phasing_MR.d_res_low_translation 19.840 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.1.4 'Wed Jun 16 18:01:28 2010' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 43 ? ? 46.56 -116.24 2 1 TYR A 46 ? ? 66.02 60.56 3 1 GLU A 131 ? ? -110.76 -135.33 4 1 TYR A 166 ? ? -142.32 -16.71 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id NAG _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id NAG _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 204 n B 2 BDP 2 B BDP 2 A BDP 203 n B 2 NAG 3 B NAG 3 A NAG 202 n B 2 BDP 4 B BDP 4 A BDP 201 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpAb BDP 'COMMON NAME' GMML 1.0 'b-D-glucopyranuronic acid' BDP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpA BDP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcA NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpAb1-3DGlcpNAcb1-4DGlcpAb1-3DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,4,3/[a2122h-1b_1-5_2*NCC/3=O][a2122A-1b_1-5]/1-2-1-2/a3-b1_b4-c1_c3-d1' WURCS PDB2Glycan 1.1.0 3 2 '[][D-1-deoxy-GlcpNAc]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 BDP C1 O1 1 NAG O3 HO3 sing ? 2 2 3 NAG C1 O1 2 BDP O4 HO4 sing ? 3 2 4 BDP C1 O1 3 NAG O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 BDP 2 n 2 NAG 3 n 2 BDP 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH #