HEADER HYDROLASE 17-SEP-13 4MRI TITLE HUMAN BRAIN ASPARTOACYLASE MUTANT F295S COMPLEX WITH INTERMEDIATE TITLE 2 ANALOG (N-PHOSPHONOMETHYL-L-ASPARTATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTOACYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AMINOACYLASE-2, ACY-2; COMPND 5 EC: 3.5.1.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACY2, ASP, ASPA; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPICZA KEYWDS CANAVAN DISEASE, N-ACETYL-L-ASPARTATE, ZINC-DEPENDENT HYDROLASE, KEYWDS 2 ASPARTOACYLASE FAMILY, AMINOACYLASE-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.WIJAYASINGHE,A.G.PAVLOVSKY,R.E.VIOLA REVDAT 4 20-SEP-23 4MRI 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4MRI 1 REMARK REVDAT 2 20-AUG-14 4MRI 1 JRNL REVDAT 1 30-JUL-14 4MRI 0 JRNL AUTH Y.S.WIJAYASINGHE,A.G.PAVLOVSKY,R.E.VIOLA JRNL TITL ASPARTOACYLASE CATALYTIC DEFICIENCY AS THE CAUSE OF CANAVAN JRNL TITL 2 DISEASE: A STRUCTURAL PERSPECTIVE. JRNL REF BIOCHEMISTRY V. 53 4970 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25003821 JRNL DOI 10.1021/BI500719K REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 22135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 35.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.816 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4997 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4772 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6774 ; 1.390 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11033 ; 0.766 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;39.396 ;24.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 874 ;18.019 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.169 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5587 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1113 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2424 ; 2.143 ; 3.986 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2425 ; 2.142 ; 3.986 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3023 ; 3.570 ; 5.971 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3023 ; 3.570 ; 5.971 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2573 ; 2.201 ; 4.197 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2574 ; 2.201 ; 4.197 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3752 ; 3.781 ; 6.177 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5546 ; 5.826 ;30.677 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5544 ; 5.827 ;30.677 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MRI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KIRKPATRICK-BAEZ MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : 0.25100 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2O4H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 3350, 0.05M SODIUM CITRATE, REMARK 280 0.3M POTASSIUM PHOSPHATE (DIBASIC), 3% ETHYLENE GLYCOL, 0.01M REMARK 280 DTT, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 73.08500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 73.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.56700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 73.08500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 73.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.56700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 73.08500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.08500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.56700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 73.08500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.08500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.56700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 CYS A 4 REMARK 465 HIS A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 GLU A 9 REMARK 465 LEU A 312 REMARK 465 HIS A 313 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 CYS B 4 REMARK 465 HIS B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 GLU B 8 REMARK 465 LEU B 312 REMARK 465 HIS B 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 78.47 -119.94 REMARK 500 ILE A 65 -62.81 -106.20 REMARK 500 PHE A 73 54.17 -92.32 REMARK 500 SER A 83 141.29 -178.13 REMARK 500 ASP A 104 -3.84 76.87 REMARK 500 HIS A 159 146.03 -173.61 REMARK 500 ASP A 234 -176.34 -56.37 REMARK 500 TRP A 252 -28.66 83.11 REMARK 500 HIS B 10 124.79 74.33 REMARK 500 GLN B 12 -71.37 -99.12 REMARK 500 CYS B 61 66.89 32.54 REMARK 500 TRP B 252 -34.58 78.93 REMARK 500 MET B 261 -59.03 -138.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 21 ND1 REMARK 620 2 GLU A 24 OE1 99.5 REMARK 620 3 GLU A 24 OE2 94.4 56.5 REMARK 620 4 HIS A 116 ND1 98.3 88.4 144.3 REMARK 620 5 AS9 A 402 OAD 149.6 103.9 82.9 101.4 REMARK 620 6 AS9 A 402 OAG 86.7 128.8 72.4 141.3 63.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 21 ND1 REMARK 620 2 GLU B 24 OE1 111.2 REMARK 620 3 HIS B 116 ND1 109.1 87.9 REMARK 620 4 AS9 B 402 OAD 146.0 94.1 93.7 REMARK 620 5 AS9 B 402 OAG 81.9 125.8 139.1 64.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AS9 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AS9 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O4H RELATED DB: PDB REMARK 900 RELATED ID: 2O53 RELATED DB: PDB DBREF 4MRI A 1 313 UNP P45381 ACY2_HUMAN 1 313 DBREF 4MRI B 1 313 UNP P45381 ACY2_HUMAN 1 313 SEQADV 4MRI SER A 295 UNP P45381 PHE 295 ENGINEERED MUTATION SEQADV 4MRI SER B 295 UNP P45381 PHE 295 ENGINEERED MUTATION SEQRES 1 A 313 MET THR SER CYS HIS ILE ALA GLU GLU HIS ILE GLN LYS SEQRES 2 A 313 VAL ALA ILE PHE GLY GLY THR HIS GLY ASN GLU LEU THR SEQRES 3 A 313 GLY VAL PHE LEU VAL LYS HIS TRP LEU GLU ASN GLY ALA SEQRES 4 A 313 GLU ILE GLN ARG THR GLY LEU GLU VAL LYS PRO PHE ILE SEQRES 5 A 313 THR ASN PRO ARG ALA VAL LYS LYS CYS THR ARG TYR ILE SEQRES 6 A 313 ASP CYS ASP LEU ASN ARG ILE PHE ASP LEU GLU ASN LEU SEQRES 7 A 313 GLY LYS LYS MET SER GLU ASP LEU PRO TYR GLU VAL ARG SEQRES 8 A 313 ARG ALA GLN GLU ILE ASN HIS LEU PHE GLY PRO LYS ASP SEQRES 9 A 313 SER GLU ASP SER TYR ASP ILE ILE PHE ASP LEU HIS ASN SEQRES 10 A 313 THR THR SER ASN MET GLY CYS THR LEU ILE LEU GLU ASP SEQRES 11 A 313 SER ARG ASN ASN PHE LEU ILE GLN MET PHE HIS TYR ILE SEQRES 12 A 313 LYS THR SER LEU ALA PRO LEU PRO CYS TYR VAL TYR LEU SEQRES 13 A 313 ILE GLU HIS PRO SER LEU LYS TYR ALA THR THR ARG SER SEQRES 14 A 313 ILE ALA LYS TYR PRO VAL GLY ILE GLU VAL GLY PRO GLN SEQRES 15 A 313 PRO GLN GLY VAL LEU ARG ALA ASP ILE LEU ASP GLN MET SEQRES 16 A 313 ARG LYS MET ILE LYS HIS ALA LEU ASP PHE ILE HIS HIS SEQRES 17 A 313 PHE ASN GLU GLY LYS GLU PHE PRO PRO CYS ALA ILE GLU SEQRES 18 A 313 VAL TYR LYS ILE ILE GLU LYS VAL ASP TYR PRO ARG ASP SEQRES 19 A 313 GLU ASN GLY GLU ILE ALA ALA ILE ILE HIS PRO ASN LEU SEQRES 20 A 313 GLN ASP GLN ASP TRP LYS PRO LEU HIS PRO GLY ASP PRO SEQRES 21 A 313 MET PHE LEU THR LEU ASP GLY LYS THR ILE PRO LEU GLY SEQRES 22 A 313 GLY ASP CYS THR VAL TYR PRO VAL PHE VAL ASN GLU ALA SEQRES 23 A 313 ALA TYR TYR GLU LYS LYS GLU ALA SER ALA LYS THR THR SEQRES 24 A 313 LYS LEU THR LEU ASN ALA LYS SER ILE ARG CYS CYS LEU SEQRES 25 A 313 HIS SEQRES 1 B 313 MET THR SER CYS HIS ILE ALA GLU GLU HIS ILE GLN LYS SEQRES 2 B 313 VAL ALA ILE PHE GLY GLY THR HIS GLY ASN GLU LEU THR SEQRES 3 B 313 GLY VAL PHE LEU VAL LYS HIS TRP LEU GLU ASN GLY ALA SEQRES 4 B 313 GLU ILE GLN ARG THR GLY LEU GLU VAL LYS PRO PHE ILE SEQRES 5 B 313 THR ASN PRO ARG ALA VAL LYS LYS CYS THR ARG TYR ILE SEQRES 6 B 313 ASP CYS ASP LEU ASN ARG ILE PHE ASP LEU GLU ASN LEU SEQRES 7 B 313 GLY LYS LYS MET SER GLU ASP LEU PRO TYR GLU VAL ARG SEQRES 8 B 313 ARG ALA GLN GLU ILE ASN HIS LEU PHE GLY PRO LYS ASP SEQRES 9 B 313 SER GLU ASP SER TYR ASP ILE ILE PHE ASP LEU HIS ASN SEQRES 10 B 313 THR THR SER ASN MET GLY CYS THR LEU ILE LEU GLU ASP SEQRES 11 B 313 SER ARG ASN ASN PHE LEU ILE GLN MET PHE HIS TYR ILE SEQRES 12 B 313 LYS THR SER LEU ALA PRO LEU PRO CYS TYR VAL TYR LEU SEQRES 13 B 313 ILE GLU HIS PRO SER LEU LYS TYR ALA THR THR ARG SER SEQRES 14 B 313 ILE ALA LYS TYR PRO VAL GLY ILE GLU VAL GLY PRO GLN SEQRES 15 B 313 PRO GLN GLY VAL LEU ARG ALA ASP ILE LEU ASP GLN MET SEQRES 16 B 313 ARG LYS MET ILE LYS HIS ALA LEU ASP PHE ILE HIS HIS SEQRES 17 B 313 PHE ASN GLU GLY LYS GLU PHE PRO PRO CYS ALA ILE GLU SEQRES 18 B 313 VAL TYR LYS ILE ILE GLU LYS VAL ASP TYR PRO ARG ASP SEQRES 19 B 313 GLU ASN GLY GLU ILE ALA ALA ILE ILE HIS PRO ASN LEU SEQRES 20 B 313 GLN ASP GLN ASP TRP LYS PRO LEU HIS PRO GLY ASP PRO SEQRES 21 B 313 MET PHE LEU THR LEU ASP GLY LYS THR ILE PRO LEU GLY SEQRES 22 B 313 GLY ASP CYS THR VAL TYR PRO VAL PHE VAL ASN GLU ALA SEQRES 23 B 313 ALA TYR TYR GLU LYS LYS GLU ALA SER ALA LYS THR THR SEQRES 24 B 313 LYS LEU THR LEU ASN ALA LYS SER ILE ARG CYS CYS LEU SEQRES 25 B 313 HIS HET ZN A 401 1 HET AS9 A 402 13 HET ZN B 401 1 HET AS9 B 402 13 HETNAM ZN ZINC ION HETNAM AS9 N-[HYDROXY(METHYL)PHOSPHORYL]-L-ASPARTIC ACID HETSYN AS9 N-PHOSPHONOMETHYL-L-ASPARTIC ACID; (2S)-2- HETSYN 2 AS9 (HYDROPEROXY(METHOXY)PHOSPHORYLAMINO)SUCCINIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 AS9 2(C5 H10 N O6 P) FORMUL 7 HOH *72(H2 O) HELIX 1 1 GLU A 24 ASN A 37 1 14 HELIX 2 2 GLY A 38 ILE A 41 5 4 HELIX 3 3 ASN A 54 LYS A 60 1 7 HELIX 4 4 ASP A 68 ILE A 72 5 5 HELIX 5 5 ASP A 74 GLY A 79 1 6 HELIX 6 6 PRO A 87 GLY A 101 1 15 HELIX 7 7 ASN A 133 ALA A 148 1 16 HELIX 8 8 THR A 166 ALA A 171 5 6 HELIX 9 9 ARG A 188 ASN A 210 1 23 HELIX 10 10 GLU A 285 TYR A 289 5 5 HELIX 11 11 GLU B 24 ASN B 37 1 14 HELIX 12 12 GLY B 38 GLN B 42 5 5 HELIX 13 13 ASN B 54 LYS B 60 1 7 HELIX 14 14 ASP B 68 ILE B 72 5 5 HELIX 15 15 ASP B 74 GLY B 79 1 6 HELIX 16 16 PRO B 87 GLY B 101 1 15 HELIX 17 17 ASN B 133 ALA B 148 1 16 HELIX 18 18 THR B 166 ALA B 171 5 6 HELIX 19 19 ARG B 188 GLU B 211 1 24 HELIX 20 20 GLU B 285 TYR B 289 5 5 SHEET 1 A 9 VAL A 48 ILE A 52 0 SHEET 2 A 9 VAL A 14 GLY A 18 1 N VAL A 14 O LYS A 49 SHEET 3 A 9 ILE A 111 ASN A 117 1 O PHE A 113 N PHE A 17 SHEET 4 A 9 TYR A 173 GLY A 180 1 O ILE A 177 N HIS A 116 SHEET 5 A 9 GLY A 123 LEU A 128 -1 N THR A 125 O GLU A 178 SHEET 6 A 9 CYS A 152 LEU A 156 1 O TYR A 155 N LEU A 126 SHEET 7 A 9 CYS A 218 VAL A 229 1 O TYR A 223 N LEU A 156 SHEET 8 A 9 SER A 295 ALA A 305 -1 O LYS A 297 N GLU A 227 SHEET 9 A 9 TYR A 279 VAL A 281 -1 N TYR A 279 O THR A 298 SHEET 1 B 3 ALA A 241 ILE A 243 0 SHEET 2 B 3 PRO A 260 THR A 264 -1 O LEU A 263 N ILE A 242 SHEET 3 B 3 THR A 269 PRO A 271 -1 O ILE A 270 N PHE A 262 SHEET 1 C 9 VAL B 48 ILE B 52 0 SHEET 2 C 9 VAL B 14 GLY B 18 1 N GLY B 18 O PHE B 51 SHEET 3 C 9 ILE B 111 ASN B 117 1 O PHE B 113 N PHE B 17 SHEET 4 C 9 TYR B 173 GLY B 180 1 O VAL B 175 N ILE B 112 SHEET 5 C 9 GLY B 123 LEU B 128 -1 N THR B 125 O GLU B 178 SHEET 6 C 9 CYS B 152 LEU B 156 1 O TYR B 153 N LEU B 126 SHEET 7 C 9 CYS B 218 VAL B 229 1 O TYR B 223 N LEU B 156 SHEET 8 C 9 SER B 295 ALA B 305 -1 O THR B 299 N LYS B 224 SHEET 9 C 9 TYR B 279 VAL B 281 -1 N TYR B 279 O THR B 298 SHEET 1 D 3 ILE B 242 ILE B 243 0 SHEET 2 D 3 PRO B 260 LEU B 263 -1 O LEU B 263 N ILE B 242 SHEET 3 D 3 THR B 269 PRO B 271 -1 O ILE B 270 N PHE B 262 LINK ND1 HIS A 21 ZN ZN A 401 1555 1555 2.07 LINK OE1 GLU A 24 ZN ZN A 401 1555 1555 2.04 LINK OE2 GLU A 24 ZN ZN A 401 1555 1555 2.49 LINK ND1 HIS A 116 ZN ZN A 401 1555 1555 2.53 LINK ZN ZN A 401 OAD AS9 A 402 1555 1555 2.40 LINK ZN ZN A 401 OAG AS9 A 402 1555 1555 2.46 LINK ND1 HIS B 21 ZN ZN B 401 1555 1555 2.13 LINK OE1 GLU B 24 ZN ZN B 401 1555 1555 1.80 LINK ND1 HIS B 116 ZN ZN B 401 1555 1555 2.41 LINK ZN ZN B 401 OAD AS9 B 402 1555 1555 2.13 LINK ZN ZN B 401 OAG AS9 B 402 1555 1555 2.61 CISPEP 1 GLY A 101 PRO A 102 0 -8.74 CISPEP 2 ALA A 148 PRO A 149 0 3.99 CISPEP 3 GLY A 180 PRO A 181 0 7.38 CISPEP 4 GLY B 101 PRO B 102 0 -1.14 CISPEP 5 ALA B 148 PRO B 149 0 9.39 CISPEP 6 GLY B 180 PRO B 181 0 -2.03 CISPEP 7 ASP B 266 GLY B 267 0 -13.90 SITE 1 AC1 4 HIS A 21 GLU A 24 HIS A 116 AS9 A 402 SITE 1 AC2 13 HIS A 21 GLU A 24 ARG A 63 ASN A 70 SITE 2 AC2 13 ARG A 71 HIS A 116 ASN A 117 TYR A 164 SITE 3 AC2 13 ARG A 168 GLU A 178 GLU A 285 TYR A 288 SITE 4 AC2 13 ZN A 401 SITE 1 AC3 4 HIS B 21 GLU B 24 HIS B 116 AS9 B 402 SITE 1 AC4 14 HIS B 21 GLU B 24 ARG B 63 ASN B 70 SITE 2 AC4 14 ARG B 71 HIS B 116 ASN B 117 ILE B 127 SITE 3 AC4 14 TYR B 164 ARG B 168 GLU B 178 GLU B 285 SITE 4 AC4 14 TYR B 288 ZN B 401 CRYST1 146.170 146.170 103.134 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009696 0.00000