HEADER TRANSPORT PROTEIN/TRANSFERASE 17-SEP-13 4MRT TITLE STRUCTURE OF THE PHOSPHOPANTETHEINE TRANSFERASE SFP IN COMPLEX WITH TITLE 2 COENZYME A AND A PEPTIDYL CARRIER PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROCIDINE SYNTHASE 3; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: PEPTIDYL CARRIER PROTEIN DOMAIN(UNP RESIDUES 3038-3113); COMPND 5 SYNONYM: TYROCIDINE SYNTHASE III, ATP-DEPENDENT ASPARAGINE ADENYLASE, COMPND 6 ASNA, ASPARAGINE ACTIVASE, ATP-DEPENDENT GLUTAMINE ADENYLASE, GLNA, COMPND 7 GLUTAMINE ACTIVASE, ATP-DEPENDENT TYROSINE ADENYLASE, TYRA, TYROSINE COMPND 8 ACTIVASE, ATP-DEPENDENT VALINE ADENYLASE, VALA, VALINE ACTIVASE, ATP- COMPND 9 DEPENDENT ORNITHINE ADENYLASE, ORNA, ORNITHINE ACTIVASE, ATP- COMPND 10 DEPENDENT LEUCINE ADENYLASE, LEUA, LEUCINE ACTIVASE; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: 4'-PHOSPHOPANTETHEINYL TRANSFERASE SFP; COMPND 15 CHAIN: A; COMPND 16 SYNONYM: SURFACTIN SYNTHASE-ACTIVATING ENZYME; COMPND 17 EC: 2.7.8.-; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS PARABREVIS; SOURCE 3 ORGANISM_TAXID: 54914; SOURCE 4 STRAIN: ATCC 8185; SOURCE 5 GENE: TYCC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15(PREP4); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE70; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 13 ORGANISM_TAXID: 224308; SOURCE 14 STRAIN: 168; SOURCE 15 GENE: BSU03570, LPA-8, SFP; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: M15(PREP4); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS PCP: AMINOACYL/PEPTIDYL CARRIER, SFP: PHOSPHOPANTETHEINE TRANSFERASE, KEYWDS 2 SFP: COENZYME A BINDING, TRANSPORT PROTEIN-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.TUFAR,S.RAHIGHI,F.I.KRAAS,D.K.KIRCHNER,F.LOEHR,E.HENRICH,J.KOEPKE, AUTHOR 2 I.DIKIC,P.GUENTERT,M.A.MARAHIEL,V.DOETSCH REVDAT 3 28-FEB-24 4MRT 1 REMARK SEQADV LINK REVDAT 2 14-MAY-14 4MRT 1 JRNL REVDAT 1 23-APR-14 4MRT 0 JRNL AUTH P.TUFAR,S.RAHIGHI,F.I.KRAAS,D.K.KIRCHNER,F.LOHR,E.HENRICH, JRNL AUTH 2 J.KOPKE,I.DIKIC,P.GUNTERT,M.A.MARAHIEL,V.DOTSCH JRNL TITL CRYSTAL STRUCTURE OF A PCP/SFP COMPLEX REVEALS THE JRNL TITL 2 STRUCTURAL BASIS FOR CARRIER PROTEIN POSTTRANSLATIONAL JRNL TITL 3 MODIFICATION. JRNL REF CHEM.BIOL. V. 21 552 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24704508 JRNL DOI 10.1016/J.CHEMBIOL.2014.02.014 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.16000 REMARK 3 B22 (A**2) : 3.12000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.467 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2548 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2386 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3452 ; 1.502 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5510 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 5.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;33.294 ;23.761 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;15.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.178 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2803 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 581 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4MRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS (DCCM) IN (+ REMARK 200 --+) GEOMETRY REMARK 200 OPTICS : THE OPTICAL ELEMENTS CONSIST OF REMARK 200 A VERTICALLY COLLIMATING MIRROR REMARK 200 (M1, FOCUS AT INFINITY), REMARK 200 FOLLOWED BY A BARTELS REMARK 200 MONOCHROMATOR WITH DUAL CHANNEL REMARK 200 CUT CRYSTALS (DCCM) IN (+--+) REMARK 200 GEOMETRY, AND A TOROIDAL MIRROR REMARK 200 (M2) TO VERTICALLY AND REMARK 200 HORIZONTALLY FOCUS THE BEAM AT REMARK 200 THE SAMPLE POSITION (WITH 2:1 REMARK 200 HORIZONTAL DEMAGNIFICATION). REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MAGNESIUM ACETATE, 0.08 M REMARK 280 SODIUM CACODYLATE, 16% (W/V) PEG 8000, 20% (V/V) GLYCEROL, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.33000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO C 2 REMARK 465 VAL C 3 REMARK 465 THR C 4 REMARK 465 GLU C 5 REMARK 465 ALA C 6 REMARK 465 GLN C 7 REMARK 465 SER C 85 REMARK 465 HIS C 86 REMARK 465 HIS C 87 REMARK 465 HIS C 88 REMARK 465 HIS C 89 REMARK 465 HIS C 90 REMARK 465 HIS C 91 REMARK 465 SER A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN C 79 CG CD OE1 NE2 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ASP A 184 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 446 O HOH A 502 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 533 O HOH A 533 2555 1.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 185 -86.86 55.31 REMARK 500 ASP A 197 124.08 -173.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 O REMARK 620 2 COA A 302 O1A 89.8 REMARK 620 3 HOH A 527 O 84.8 95.6 REMARK 620 4 HOH A 528 O 89.9 172.1 92.3 REMARK 620 5 HOH A 529 O 179.8 90.0 95.3 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 GLU A 151 OE1 87.4 REMARK 620 3 COA A 302 O2A 90.5 94.4 REMARK 620 4 COA A 302 O4A 177.6 90.2 89.8 REMARK 620 5 HOH A 468 O 88.3 168.3 96.5 94.1 REMARK 620 6 HOH A 469 O 88.8 82.8 177.2 90.8 86.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MD9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ACITVE SITE MUTANT PEPTIDYL CARRIER PROTEIN TYCC3_ REMARK 900 PCP REMARK 900 RELATED ID: 1QR0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 4'-PHOSPHOPANTETHEINYL TRANSFERASE SFP- REMARK 900 COENZYME A COMPLEX REMARK 900 RELATED ID: 2GE1 RELATED DB: PDB REMARK 900 PROTEIN COMPLEX OF A-STATE TYCC3-APO-PCP WITH THE PPTASE SFP (MODEL) DBREF 4MRT C 8 83 UNP O30409 TYCC_BREPA 3038 3113 DBREF 4MRT A 1 224 UNP P39135 SFP_BACSU 1 224 SEQADV 4MRT PRO C 2 UNP O30409 EXPRESSION TAG SEQADV 4MRT VAL C 3 UNP O30409 EXPRESSION TAG SEQADV 4MRT THR C 4 UNP O30409 EXPRESSION TAG SEQADV 4MRT GLU C 5 UNP O30409 EXPRESSION TAG SEQADV 4MRT ALA C 6 UNP O30409 EXPRESSION TAG SEQADV 4MRT GLN C 7 UNP O30409 EXPRESSION TAG SEQADV 4MRT ALA C 45 UNP O30409 SER 3075 ENGINEERED MUTATION SEQADV 4MRT ARG C 84 UNP O30409 CLONING ARTIFACT SEQADV 4MRT SER C 85 UNP O30409 CLONING ARTIFACT SEQADV 4MRT HIS C 86 UNP O30409 EXPRESSION TAG SEQADV 4MRT HIS C 87 UNP O30409 EXPRESSION TAG SEQADV 4MRT HIS C 88 UNP O30409 EXPRESSION TAG SEQADV 4MRT HIS C 89 UNP O30409 EXPRESSION TAG SEQADV 4MRT HIS C 90 UNP O30409 EXPRESSION TAG SEQADV 4MRT HIS C 91 UNP O30409 EXPRESSION TAG SEQADV 4MRT THR A 22 UNP P39135 SER 22 VARIANT SEQADV 4MRT GLY A 97 UNP P39135 CYS 97 VARIANT SEQADV 4MRT ARG A 225 UNP P39135 CLONING ARTIFACT SEQADV 4MRT SER A 226 UNP P39135 CLONING ARTIFACT SEQADV 4MRT HIS A 227 UNP P39135 EXPRESSION TAG SEQADV 4MRT HIS A 228 UNP P39135 EXPRESSION TAG SEQADV 4MRT HIS A 229 UNP P39135 EXPRESSION TAG SEQADV 4MRT HIS A 230 UNP P39135 EXPRESSION TAG SEQADV 4MRT HIS A 231 UNP P39135 EXPRESSION TAG SEQADV 4MRT HIS A 232 UNP P39135 EXPRESSION TAG SEQRES 1 C 90 PRO VAL THR GLU ALA GLN TYR VAL ALA PRO THR ASN ALA SEQRES 2 C 90 VAL GLU SER LYS LEU ALA GLU ILE TRP GLU ARG VAL LEU SEQRES 3 C 90 GLY VAL SER GLY ILE GLY ILE LEU ASP ASN PHE PHE GLN SEQRES 4 C 90 ILE GLY GLY HIS ALA LEU LYS ALA MET ALA VAL ALA ALA SEQRES 5 C 90 GLN VAL HIS ARG GLU TYR GLN VAL GLU LEU PRO LEU LYS SEQRES 6 C 90 VAL LEU PHE ALA GLN PRO THR ILE LYS ALA LEU ALA GLN SEQRES 7 C 90 TYR VAL ALA THR ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 A 232 MET LYS ILE TYR GLY ILE TYR MET ASP ARG PRO LEU SER SEQRES 2 A 232 GLN GLU GLU ASN GLU ARG PHE MET THR PHE ILE SER PRO SEQRES 3 A 232 GLU LYS ARG GLU LYS CYS ARG ARG PHE TYR HIS LYS GLU SEQRES 4 A 232 ASP ALA HIS ARG THR LEU LEU GLY ASP VAL LEU VAL ARG SEQRES 5 A 232 SER VAL ILE SER ARG GLN TYR GLN LEU ASP LYS SER ASP SEQRES 6 A 232 ILE ARG PHE SER THR GLN GLU TYR GLY LYS PRO CYS ILE SEQRES 7 A 232 PRO ASP LEU PRO ASP ALA HIS PHE ASN ILE SER HIS SER SEQRES 8 A 232 GLY ARG TRP VAL ILE GLY ALA PHE ASP SER GLN PRO ILE SEQRES 9 A 232 GLY ILE ASP ILE GLU LYS THR LYS PRO ILE SER LEU GLU SEQRES 10 A 232 ILE ALA LYS ARG PHE PHE SER LYS THR GLU TYR SER ASP SEQRES 11 A 232 LEU LEU ALA LYS ASP LYS ASP GLU GLN THR ASP TYR PHE SEQRES 12 A 232 TYR HIS LEU TRP SER MET LYS GLU SER PHE ILE LYS GLN SEQRES 13 A 232 GLU GLY LYS GLY LEU SER LEU PRO LEU ASP SER PHE SER SEQRES 14 A 232 VAL ARG LEU HIS GLN ASP GLY GLN VAL SER ILE GLU LEU SEQRES 15 A 232 PRO ASP SER HIS SER PRO CYS TYR ILE LYS THR TYR GLU SEQRES 16 A 232 VAL ASP PRO GLY TYR LYS MET ALA VAL CYS ALA ALA HIS SEQRES 17 A 232 PRO ASP PHE PRO GLU ASP ILE THR MET VAL SER TYR GLU SEQRES 18 A 232 GLU LEU LEU ARG SER HIS HIS HIS HIS HIS HIS HET MG A 301 1 HET COA A 302 48 HET GOL A 303 6 HET MG A 304 1 HET SO4 A 305 5 HETNAM MG MAGNESIUM ION HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 COA C21 H36 N7 O16 P3 S FORMUL 5 GOL C3 H8 O3 FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *172(H2 O) HELIX 1 1 ASN C 13 GLY C 28 1 16 HELIX 2 2 HIS C 44 GLN C 60 1 17 HELIX 3 3 PRO C 64 GLN C 71 1 8 HELIX 4 4 THR C 73 THR C 83 1 11 HELIX 5 5 SER A 13 THR A 22 1 10 HELIX 6 6 SER A 25 ARG A 34 1 10 HELIX 7 7 HIS A 37 GLN A 60 1 24 HELIX 8 8 ASP A 62 ILE A 66 5 5 HELIX 9 9 LEU A 116 PHE A 123 1 8 HELIX 10 10 SER A 124 ALA A 133 1 10 HELIX 11 11 ASP A 135 GLY A 158 1 24 HELIX 12 12 LYS A 159 LEU A 163 5 5 HELIX 13 13 PRO A 164 PHE A 168 5 5 HELIX 14 14 SER A 219 ARG A 225 1 7 SHEET 1 A 4 HIS A 85 SER A 91 0 SHEET 2 A 4 TRP A 94 ASP A 100 -1 O ILE A 96 N SER A 89 SHEET 3 A 4 LYS A 2 TYR A 7 -1 N TYR A 4 O GLY A 97 SHEET 4 A 4 THR A 216 MET A 217 1 O THR A 216 N ILE A 3 SHEET 1 B 2 SER A 69 THR A 70 0 SHEET 2 B 2 PRO A 76 CYS A 77 -1 O CYS A 77 N SER A 69 SHEET 1 C 3 ILE A 104 LYS A 110 0 SHEET 2 C 3 TYR A 200 ALA A 206 -1 O CYS A 205 N GLY A 105 SHEET 3 C 3 TYR A 190 TYR A 194 -1 N TYR A 190 O ALA A 206 SHEET 1 D 2 SER A 169 LEU A 172 0 SHEET 2 D 2 VAL A 178 GLU A 181 -1 O GLU A 181 N SER A 169 LINK O HIS A 90 MG MG A 304 1555 1555 2.06 LINK OD1 ASP A 107 MG MG A 301 1555 1555 1.90 LINK OE1 GLU A 151 MG MG A 301 1555 1555 2.08 LINK MG MG A 301 O2A COA A 302 1555 1555 1.94 LINK MG MG A 301 O4A COA A 302 1555 1555 2.05 LINK MG MG A 301 O HOH A 468 1555 1555 2.05 LINK MG MG A 301 O HOH A 469 1555 1555 2.26 LINK O1A COA A 302 MG MG A 304 1555 1555 2.10 LINK MG MG A 304 O HOH A 527 1555 1555 2.04 LINK MG MG A 304 O HOH A 528 1555 1555 2.21 LINK MG MG A 304 O HOH A 529 1555 1555 2.09 CISPEP 1 ASP A 184 SER A 185 0 -9.35 SITE 1 AC1 5 ASP A 107 GLU A 151 COA A 302 HOH A 468 SITE 2 AC1 5 HOH A 469 SITE 1 AC2 36 LYS A 31 THR A 44 TYR A 73 GLY A 74 SITE 2 AC2 36 LYS A 75 PRO A 76 ASN A 87 ILE A 88 SITE 3 AC2 36 SER A 89 HIS A 90 ASP A 107 GLU A 151 SITE 4 AC2 36 LYS A 155 GLY A 158 LYS A 159 GLY A 160 SITE 5 AC2 36 LEU A 161 SER A 162 MG A 301 GOL A 303 SITE 6 AC2 36 MG A 304 HOH A 402 HOH A 403 HOH A 414 SITE 7 AC2 36 HOH A 441 HOH A 443 HOH A 444 HOH A 468 SITE 8 AC2 36 HOH A 469 HOH A 527 HOH A 529 HOH A 530 SITE 9 AC2 36 HOH A 531 HIS C 44 ALA C 45 PHE C 69 SITE 1 AC3 6 LYS A 28 ASP A 48 PHE A 68 ILE A 88 SITE 2 AC3 6 COA A 302 HOH A 444 SITE 1 AC4 5 HIS A 90 COA A 302 HOH A 527 HOH A 528 SITE 2 AC4 5 HOH A 529 SITE 1 AC5 3 LYS A 75 HIS A 85 HOH A 440 CRYST1 160.660 39.090 53.310 90.00 107.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006224 0.000000 0.001907 0.00000 SCALE2 0.000000 0.025582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019619 0.00000