HEADER HYDROLASE 18-SEP-13 4MS6 TITLE HUMAN LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH PRO-GLY-PRO ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTA-4 HYDROLASE, LEUKOTRIENE A(4) HYDROLASE; COMPND 5 EC: 3.3.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LTA4, LTA4H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAQN KEYWDS LEUKOTRIENE A4 HYDROLASE, METALLOPROTEIN, HYDROLASE, PROTEASE, ZINC KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.STSIAPANAVA,A.RINALDO-MATTHIS,J.Z.HAEGGSTROM REVDAT 3 20-SEP-23 4MS6 1 REMARK LINK REVDAT 2 23-APR-14 4MS6 1 JRNL REVDAT 1 12-MAR-14 4MS6 0 JRNL AUTH A.STSIAPANAVA,U.OLSSON,M.WAN,T.KLEINSCHMIDT,D.RUTISHAUSER, JRNL AUTH 2 R.A.ZUBAREV,B.SAMUELSSON,A.RINALDO-MATTHIS,J.Z.HAEGGSTROM JRNL TITL BINDING OF PRO-GLY-PRO AT THE ACTIVE SITE OF LEUKOTRIENE A4 JRNL TITL 2 HYDROLASE/AMINOPEPTIDASE AND DEVELOPMENT OF AN EPOXIDE JRNL TITL 3 HYDROLASE SELECTIVE INHIBITOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 4227 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24591641 JRNL DOI 10.1073/PNAS.1402136111 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 67568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3605 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4907 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 291 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -1.73000 REMARK 3 B33 (A**2) : 2.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5185 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4940 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7084 ; 1.929 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11445 ; 1.125 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 653 ; 6.276 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;37.355 ;24.553 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ;14.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5849 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1172 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) OR REMARK 200 SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROCESS REMARK 200 DATA SCALING SOFTWARE : PROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71210 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 49.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.18100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.01560 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DPR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM ACETATE, 22% (W/V) PEG REMARK 280 8000, 5 MM YBCL3, PH 7.0, LIQUID DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.38300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.48200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.74150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.48200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.38300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.74150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 PRO A 1 REMARK 465 GLU A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 245 O HOH A 920 1.72 REMARK 500 OD1 ASP A 481 OXT ACY A 709 2.07 REMARK 500 O HOH A 1207 O HOH A 1208 2.16 REMARK 500 ND2 ASN A 67 O HOH A 909 2.17 REMARK 500 OD1 ASN A 530 O HOH A 1114 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 YB YB A 703 O HOH A 896 1545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 522 CG GLU A 522 CD 0.094 REMARK 500 GLU A 522 CD GLU A 522 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 312 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 312 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 481 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 563 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 79 73.10 -114.34 REMARK 500 SER A 80 -119.23 35.97 REMARK 500 ASN A 97 -0.50 76.90 REMARK 500 SER A 112 127.56 -35.10 REMARK 500 ASP A 183 107.50 -171.14 REMARK 500 GLU A 271 42.29 -75.72 REMARK 500 CYS A 274 -13.90 77.47 REMARK 500 LEU A 275 77.41 -153.89 REMARK 500 TRP A 301 -63.40 -102.76 REMARK 500 PHE A 432 40.05 -101.76 REMARK 500 LYS A 546 31.33 72.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 703 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 47 OD1 51.3 REMARK 620 3 ACY A 708 OXT 118.9 68.4 REMARK 620 4 ACY A 708 O 109.5 69.7 47.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 706 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 GLU A 70 OE1 50.9 REMARK 620 3 HOH A1221 O 107.5 72.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 NE2 REMARK 620 2 HIS A 299 NE2 105.5 REMARK 620 3 GLU A 318 OE1 106.7 104.9 REMARK 620 4 28T A 702 O 113.5 122.4 102.5 REMARK 620 5 HOH A 961 O 110.8 134.9 89.5 15.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 704 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 481 OD2 REMARK 620 2 ASP A 481 OD1 54.7 REMARK 620 3 ACY A 709 O 124.7 117.0 REMARK 620 4 HOH A 861 O 130.0 75.4 78.0 REMARK 620 5 HOH A 896 O 80.2 64.7 152.2 75.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 705 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 981 O REMARK 620 2 HOH A1130 O 74.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 28T A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YB A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 709 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MKT RELATED DB: PDB REMARK 900 HUMAN LEUKOTRIENE A4 HYDROLASE IN COMPLEX WITH PRO-GLY-PRO ANALOGUE REMARK 900 AND 4-(4-BENZYLPHENYL)THIAZOL-2-AMINE REMARK 900 RELATED ID: 4L2L RELATED DB: PDB REMARK 900 HUMAN LEUKOTRIENE A4 HYDROLASE COMPLEXED WITH LIGAND 4-(4- REMARK 900 BENZYLPHENYL)THIAZOL-2-AMINE DBREF 4MS6 A 0 610 UNP P09960 LKHA4_HUMAN 1 611 SEQRES 1 A 611 MET PRO GLU ILE VAL ASP THR CYS SER LEU ALA SER PRO SEQRES 2 A 611 ALA SER VAL CYS ARG THR LYS HIS LEU HIS LEU ARG CYS SEQRES 3 A 611 SER VAL ASP PHE THR ARG ARG THR LEU THR GLY THR ALA SEQRES 4 A 611 ALA LEU THR VAL GLN SER GLN GLU ASP ASN LEU ARG SER SEQRES 5 A 611 LEU VAL LEU ASP THR LYS ASP LEU THR ILE GLU LYS VAL SEQRES 6 A 611 VAL ILE ASN GLY GLN GLU VAL LYS TYR ALA LEU GLY GLU SEQRES 7 A 611 ARG GLN SER TYR LYS GLY SER PRO MET GLU ILE SER LEU SEQRES 8 A 611 PRO ILE ALA LEU SER LYS ASN GLN GLU ILE VAL ILE GLU SEQRES 9 A 611 ILE SER PHE GLU THR SER PRO LYS SER SER ALA LEU GLN SEQRES 10 A 611 TRP LEU THR PRO GLU GLN THR SER GLY LYS GLU HIS PRO SEQRES 11 A 611 TYR LEU PHE SER GLN CYS GLN ALA ILE HIS CYS ARG ALA SEQRES 12 A 611 ILE LEU PRO CYS GLN ASP THR PRO SER VAL LYS LEU THR SEQRES 13 A 611 TYR THR ALA GLU VAL SER VAL PRO LYS GLU LEU VAL ALA SEQRES 14 A 611 LEU MET SER ALA ILE ARG ASP GLY GLU THR PRO ASP PRO SEQRES 15 A 611 GLU ASP PRO SER ARG LYS ILE TYR LYS PHE ILE GLN LYS SEQRES 16 A 611 VAL PRO ILE PRO CYS TYR LEU ILE ALA LEU VAL VAL GLY SEQRES 17 A 611 ALA LEU GLU SER ARG GLN ILE GLY PRO ARG THR LEU VAL SEQRES 18 A 611 TRP SER GLU LYS GLU GLN VAL GLU LYS SER ALA TYR GLU SEQRES 19 A 611 PHE SER GLU THR GLU SER MET LEU LYS ILE ALA GLU ASP SEQRES 20 A 611 LEU GLY GLY PRO TYR VAL TRP GLY GLN TYR ASP LEU LEU SEQRES 21 A 611 VAL LEU PRO PRO SER PHE PRO TYR GLY GLY MET GLU ASN SEQRES 22 A 611 PRO CYS LEU THR PHE VAL THR PRO THR LEU LEU ALA GLY SEQRES 23 A 611 ASP LYS SER LEU SER ASN VAL ILE ALA HIS GLU ILE SER SEQRES 24 A 611 HIS SER TRP THR GLY ASN LEU VAL THR ASN LYS THR TRP SEQRES 25 A 611 ASP HIS PHE TRP LEU ASN GLU GLY HIS THR VAL TYR LEU SEQRES 26 A 611 GLU ARG HIS ILE CYS GLY ARG LEU PHE GLY GLU LYS PHE SEQRES 27 A 611 ARG HIS PHE ASN ALA LEU GLY GLY TRP GLY GLU LEU GLN SEQRES 28 A 611 ASN SER VAL LYS THR PHE GLY GLU THR HIS PRO PHE THR SEQRES 29 A 611 LYS LEU VAL VAL ASP LEU THR ASP ILE ASP PRO ASP VAL SEQRES 30 A 611 ALA TYR SER SER VAL PRO TYR GLU LYS GLY PHE ALA LEU SEQRES 31 A 611 LEU PHE TYR LEU GLU GLN LEU LEU GLY GLY PRO GLU ILE SEQRES 32 A 611 PHE LEU GLY PHE LEU LYS ALA TYR VAL GLU LYS PHE SER SEQRES 33 A 611 TYR LYS SER ILE THR THR ASP ASP TRP LYS ASP PHE LEU SEQRES 34 A 611 TYR SER TYR PHE LYS ASP LYS VAL ASP VAL LEU ASN GLN SEQRES 35 A 611 VAL ASP TRP ASN ALA TRP LEU TYR SER PRO GLY LEU PRO SEQRES 36 A 611 PRO ILE LYS PRO ASN TYR ASP MET THR LEU THR ASN ALA SEQRES 37 A 611 CYS ILE ALA LEU SER GLN ARG TRP ILE THR ALA LYS GLU SEQRES 38 A 611 ASP ASP LEU ASN SER PHE ASN ALA THR ASP LEU LYS ASP SEQRES 39 A 611 LEU SER SER HIS GLN LEU ASN GLU PHE LEU ALA GLN THR SEQRES 40 A 611 LEU GLN ARG ALA PRO LEU PRO LEU GLY HIS ILE LYS ARG SEQRES 41 A 611 MET GLN GLU VAL TYR ASN PHE ASN ALA ILE ASN ASN SER SEQRES 42 A 611 GLU ILE ARG PHE ARG TRP LEU ARG LEU CYS ILE GLN SER SEQRES 43 A 611 LYS TRP GLU ASP ALA ILE PRO LEU ALA LEU LYS MET ALA SEQRES 44 A 611 THR GLU GLN GLY ARG MET LYS PHE THR ARG PRO LEU PHE SEQRES 45 A 611 LYS ASP LEU ALA ALA PHE ASP LYS SER HIS ASP GLN ALA SEQRES 46 A 611 VAL ARG THR TYR GLN GLU HIS LYS ALA SER MET HIS PRO SEQRES 47 A 611 VAL THR ALA MET LEU VAL GLY LYS ASP LEU LYS VAL ASP HET ZN A 701 1 HET 28T A 702 38 HET YB A 703 1 HET YB A 704 1 HET YB A 705 1 HET YB A 706 1 HET YB A 707 1 HET ACY A 708 4 HET ACY A 709 4 HETNAM ZN ZINC ION HETNAM 28T 1-{4-OXO-4-[(2S)-PYRROLIDIN-2-YL]BUTANOYL}-L-PROLINE HETNAM YB YTTERBIUM (III) ION HETNAM ACY ACETIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 28T C13 H20 N2 O4 FORMUL 4 YB 5(YB 3+) FORMUL 9 ACY 2(C2 H4 O2) FORMUL 11 HOH *487(H2 O) HELIX 1 1 GLN A 79 GLY A 83 5 5 HELIX 2 2 THR A 119 THR A 123 5 5 HELIX 3 3 HIS A 139 ILE A 143 5 5 HELIX 4 4 TYR A 200 ILE A 202 5 3 HELIX 5 5 GLU A 223 PHE A 234 1 12 HELIX 6 6 GLU A 236 GLY A 249 1 14 HELIX 7 7 PRO A 280 LEU A 283 5 4 HELIX 8 8 SER A 290 HIS A 299 1 10 HELIX 9 9 THR A 310 HIS A 313 5 4 HELIX 10 10 PHE A 314 GLY A 334 1 21 HELIX 11 11 GLY A 334 GLY A 357 1 24 HELIX 12 12 HIS A 360 LYS A 364 5 5 HELIX 13 13 ASP A 373 TYR A 378 1 6 HELIX 14 14 SER A 380 LEU A 397 1 18 HELIX 15 15 GLY A 399 SER A 415 1 17 HELIX 16 16 THR A 420 PHE A 432 1 13 HELIX 17 17 LYS A 435 GLN A 441 1 7 HELIX 18 18 ASP A 443 SER A 450 1 8 HELIX 19 19 THR A 465 ALA A 478 1 14 HELIX 20 20 LYS A 479 PHE A 486 5 8 HELIX 21 21 ASN A 487 LYS A 492 5 6 HELIX 22 22 SER A 495 GLN A 508 1 14 HELIX 23 23 PRO A 513 ASN A 525 1 13 HELIX 24 24 PHE A 526 ILE A 529 5 4 HELIX 25 25 ASN A 531 SER A 545 1 15 HELIX 26 26 ASP A 549 GLN A 561 1 13 HELIX 27 27 ARG A 563 PHE A 577 1 15 HELIX 28 28 PHE A 577 LYS A 592 1 16 HELIX 29 29 ALA A 593 MET A 595 5 3 HELIX 30 30 HIS A 596 LYS A 608 1 13 SHEET 1 A 8 GLN A 69 GLU A 70 0 SHEET 2 A 8 THR A 60 ILE A 66 -1 N ILE A 66 O GLN A 69 SHEET 3 A 8 GLU A 99 GLU A 107 -1 O GLU A 103 N VAL A 65 SHEET 4 A 8 THR A 33 SER A 44 -1 N ALA A 38 O ILE A 104 SHEET 5 A 8 CYS A 16 ASP A 28 -1 N LYS A 19 O THR A 41 SHEET 6 A 8 LYS A 153 PRO A 163 1 O SER A 161 N CYS A 25 SHEET 7 A 8 ASP A 183 PRO A 198 -1 O GLN A 193 N TYR A 156 SHEET 8 A 8 ILE A 173 ASP A 180 -1 N ASP A 175 O LYS A 190 SHEET 1 B 3 LEU A 49 THR A 56 0 SHEET 2 B 3 SER A 84 LEU A 94 -1 O MET A 86 N LEU A 54 SHEET 3 B 3 TYR A 73 LEU A 75 -1 N ALA A 74 O GLU A 87 SHEET 1 C 4 LEU A 115 LEU A 118 0 SHEET 2 C 4 TYR A 130 SER A 133 -1 O TYR A 130 N LEU A 118 SHEET 3 C 4 LEU A 204 GLY A 207 -1 O VAL A 206 N LEU A 131 SHEET 4 C 4 VAL A 167 MET A 170 -1 N VAL A 167 O GLY A 207 SHEET 1 D 5 GLU A 210 GLY A 215 0 SHEET 2 D 5 THR A 218 SER A 222 -1 O VAL A 220 N ARG A 212 SHEET 3 D 5 ASP A 257 VAL A 260 1 O VAL A 260 N TRP A 221 SHEET 4 D 5 LEU A 275 VAL A 278 1 O VAL A 278 N LEU A 259 SHEET 5 D 5 GLY A 269 MET A 270 -1 N MET A 270 O PHE A 277 SHEET 1 E 2 VAL A 306 ASN A 308 0 SHEET 2 E 2 LYS A 417 ILE A 419 1 O ILE A 419 N THR A 307 LINK OD2 ASP A 47 YB YB A 703 1555 1555 2.55 LINK OD1 ASP A 47 YB YB A 703 1555 1555 2.69 LINK OE2 GLU A 70 YB YB A 706 1555 1555 2.50 LINK OE1 GLU A 70 YB YB A 706 1555 1555 2.66 LINK NE2 HIS A 295 ZN ZN A 701 1555 1555 2.09 LINK NE2 HIS A 299 ZN ZN A 701 1555 1555 2.06 LINK OE1 GLU A 318 ZN ZN A 701 1555 1555 1.99 LINK OD2 ASP A 481 YB YB A 704 1555 1555 2.21 LINK OD1 ASP A 481 YB YB A 704 1555 1555 2.34 LINK ZN ZN A 701 O A28T A 702 1555 1555 1.84 LINK ZN ZN A 701 O HOH A 961 1555 1555 1.85 LINK YB YB A 703 OXT ACY A 708 1555 1555 2.71 LINK YB YB A 703 O ACY A 708 1555 1555 2.84 LINK YB YB A 704 O ACY A 709 1555 1555 2.19 LINK YB YB A 704 O HOH A 861 1555 1555 2.45 LINK YB YB A 704 O HOH A 896 1555 1555 2.52 LINK YB YB A 705 O HOH A 981 1555 1555 2.82 LINK YB YB A 705 O HOH A1130 1555 1555 2.64 LINK YB YB A 706 O HOH A1221 1555 1555 2.30 LINK YB YB A 707 O HOH A1273 1555 1555 2.57 CISPEP 1 GLN A 136 ALA A 137 0 -2.79 CISPEP 2 ALA A 510 PRO A 511 0 -4.97 SITE 1 AC1 7 HIS A 295 HIS A 299 GLU A 318 TYR A 383 SITE 2 AC1 7 28T A 702 HOH A 960 HOH A 961 SITE 1 AC2 19 GLN A 136 TYR A 267 GLY A 268 GLY A 269 SITE 2 AC2 19 MET A 270 GLU A 271 HIS A 295 GLU A 296 SITE 3 AC2 19 HIS A 299 GLU A 318 TYR A 378 TYR A 383 SITE 4 AC2 19 ARG A 563 LYS A 565 ZN A 701 HOH A 835 SITE 5 AC2 19 HOH A 960 HOH A 961 HOH A1179 SITE 1 AC3 7 ASP A 47 ASP A 481 ACY A 708 ACY A 709 SITE 2 AC3 7 HOH A 861 HOH A 896 HOH A 929 SITE 1 AC4 7 ASP A 47 ASP A 481 ACY A 708 ACY A 709 SITE 2 AC4 7 HOH A 861 HOH A 896 HOH A 929 SITE 1 AC5 3 ASP A 175 HOH A 981 HOH A1130 SITE 1 AC6 3 GLU A 70 GLU A 121 HOH A1221 SITE 1 AC7 2 ASP A 426 HOH A1273 SITE 1 AC8 9 ASP A 47 ARG A 174 ASP A 481 YB A 703 SITE 2 AC8 9 YB A 704 ACY A 709 HOH A 852 HOH A 861 SITE 3 AC8 9 HOH A 929 SITE 1 AC9 10 ASP A 47 ASN A 48 LYS A 479 ASP A 481 SITE 2 AC9 10 YB A 703 YB A 704 ACY A 708 HOH A 852 SITE 3 AC9 10 HOH A 861 HOH A 929 CRYST1 76.766 87.483 98.964 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010105 0.00000