HEADER RNA 18-SEP-13 4MSB TITLE RNA 10MER DUPLEX WITH TWO 2'-5'-LINKAGES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA 10MER DUPLEX WITH TWO 2'-5'-LINKAGES; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED BY SOLID PHASE SYNTHESIS, AND SOURCE 4 PURIFIED BY HPLC KEYWDS 2'-5'-LINKAGE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.SHENG,L.LI,A.E.ENGELHART,J.GAN,J.WANG,J.W.SZOSTAK REVDAT 4 28-FEB-24 4MSB 1 REMARK LINK REVDAT 3 24-JAN-18 4MSB 1 AUTHOR REVDAT 2 19-MAR-14 4MSB 1 JRNL REVDAT 1 12-FEB-14 4MSB 0 JRNL AUTH J.SHENG,L.LI,A.E.ENGELHART,J.GAN,J.WANG,J.W.SZOSTAK JRNL TITL STRUCTURAL INSIGHTS INTO THE EFFECTS OF 2'-5' LINKAGES ON JRNL TITL 2 THE RNA DUPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 3050 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24516151 JRNL DOI 10.1073/PNAS.1317799111 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 21233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1048 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1272 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1416 ; 0.005 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2202 ; 1.526 ; 1.430 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 630 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1416 ; 5.964 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 39 ;19.899 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1427 ;11.255 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2282 2.2013 -16.5871 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0524 REMARK 3 T33: 0.0486 T12: 0.0057 REMARK 3 T13: -0.0186 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.9524 L22: 1.1115 REMARK 3 L33: 0.8227 L12: 0.4683 REMARK 3 L13: -1.0092 L23: 0.2537 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.0547 S13: 0.0689 REMARK 3 S21: -0.0341 S22: 0.0066 S23: 0.0504 REMARK 3 S31: -0.0231 S32: 0.0158 S33: -0.0511 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7103 2.5535 -12.5084 REMARK 3 T TENSOR REMARK 3 T11: 0.0356 T22: 0.0166 REMARK 3 T33: 0.0730 T12: -0.0042 REMARK 3 T13: 0.0003 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.3953 L22: 0.5310 REMARK 3 L33: 2.0314 L12: 0.0064 REMARK 3 L13: -0.3871 L23: 1.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: -0.0853 S13: 0.0617 REMARK 3 S21: -0.0347 S22: 0.0704 S23: 0.0298 REMARK 3 S31: -0.0382 S32: 0.1632 S33: 0.0293 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3160 5.5685 -8.7397 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.1506 REMARK 3 T33: 0.0599 T12: -0.0250 REMARK 3 T13: 0.0344 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.1350 L22: 0.8401 REMARK 3 L33: 1.9908 L12: 0.3159 REMARK 3 L13: 0.4516 L23: 0.9407 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: -0.0327 S13: -0.0218 REMARK 3 S21: -0.1602 S22: 0.0305 S23: -0.0839 REMARK 3 S31: -0.0061 S32: -0.2189 S33: 0.0291 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 10 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4053 4.4524 -4.6448 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.1070 REMARK 3 T33: 0.0579 T12: -0.0027 REMARK 3 T13: 0.0013 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.6735 L22: 0.7161 REMARK 3 L33: 0.6345 L12: 0.0777 REMARK 3 L13: -0.6026 L23: -0.2580 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: 0.0392 S13: 0.0236 REMARK 3 S21: -0.0001 S22: 0.1307 S23: -0.0703 REMARK 3 S31: 0.0512 S32: -0.1149 S33: -0.0477 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 10 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3223 10.0280 -33.5055 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.0410 REMARK 3 T33: 0.0412 T12: 0.0152 REMARK 3 T13: 0.0058 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.4071 L22: 0.4806 REMARK 3 L33: 0.6951 L12: 0.4166 REMARK 3 L13: 0.2499 L23: 0.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: -0.0182 S13: 0.0547 REMARK 3 S21: 0.1433 S22: -0.0343 S23: 0.0884 REMARK 3 S31: 0.0598 S32: -0.0093 S33: -0.0929 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 1 F 10 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3778 9.6786 -37.7362 REMARK 3 T TENSOR REMARK 3 T11: 0.1031 T22: 0.1424 REMARK 3 T33: 0.0270 T12: 0.0550 REMARK 3 T13: 0.0045 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.0278 L22: 0.2192 REMARK 3 L33: 1.3465 L12: -0.0468 REMARK 3 L13: 0.1834 L23: -0.1701 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.0142 S13: -0.0221 REMARK 3 S21: 0.0785 S22: 0.1670 S23: 0.0182 REMARK 3 S31: -0.0560 S32: 0.0418 S33: -0.1558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4MSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-12; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.2.1; 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0; 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22386 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.03900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% MPD (2-METHYL-2,4-PENTANEDIOL), 40 REMARK 280 MM SODIUM CACODYLATE PH 6.0, 12 MM SPERMINE TETRAHYDROCHLORIDE, REMARK 280 AND 80 MM STRONTIUM (II) CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.07500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 12.94650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.07500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 12.94650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 219 O HOH D 224 1.71 REMARK 500 O HOH A 238 O HOH B 231 1.80 REMARK 500 O HOH A 201 O HOH A 221 1.86 REMARK 500 SR SR D 101 O HOH D 223 1.88 REMARK 500 SR SR D 101 O HOH D 219 1.94 REMARK 500 SR SR B 101 O HOH A 238 1.96 REMARK 500 O HOH A 224 O HOH A 238 2.13 REMARK 500 O HOH D 219 O HOH D 225 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 207 O HOH E 226 1545 1.57 REMARK 500 O HOH A 239 O HOH E 226 1545 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C E 8 O5' - P - OP2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 206 O REMARK 620 2 HOH A 209 O 72.9 REMARK 620 3 HOH A 219 O 66.6 107.0 REMARK 620 4 HOH A 220 O 70.6 140.0 72.4 REMARK 620 5 HOH A 223 O 77.8 73.8 141.7 83.1 REMARK 620 6 HOH B 202 O 143.5 75.0 141.0 131.3 77.1 REMARK 620 7 HOH B 205 O 134.0 142.1 73.0 77.3 130.2 82.4 REMARK 620 8 HOH B 232 O 118.3 73.3 76.3 139.9 136.1 66.9 69.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR B 101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 224 O REMARK 620 2 HOH A 233 O 62.3 REMARK 620 3 HOH B 206 O 126.3 72.9 REMARK 620 4 HOH B 213 O 155.4 135.9 78.3 REMARK 620 5 HOH B 214 O 113.3 69.4 73.2 70.6 REMARK 620 6 HOH B 231 O 84.5 116.5 144.5 72.2 78.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR C 101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 206 O REMARK 620 2 HOH C 224 O 67.7 REMARK 620 3 HOH C 226 O 67.6 104.2 REMARK 620 4 HOH C 227 O 127.3 129.0 126.9 REMARK 620 5 HOH D 205 O 139.1 145.5 78.1 59.7 REMARK 620 6 HOH D 230 O 73.0 135.8 77.9 64.2 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR D 101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 216 O REMARK 620 2 HOH C 218 O 77.8 REMARK 620 3 HOH C 227 O 77.9 53.1 REMARK 620 4 HOH D 210 O 128.7 144.0 144.3 REMARK 620 5 HOH D 225 O 93.8 131.7 78.6 76.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR E 102 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G E 10 O3' REMARK 620 2 G E 10 O2' 63.3 REMARK 620 3 HOH E 226 O 100.8 67.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR E 101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E 202 O REMARK 620 2 HOH E 205 O 77.5 REMARK 620 3 HOH E 210 O 64.9 63.8 REMARK 620 4 HOH E 224 O 62.8 80.7 121.4 REMARK 620 5 HOH E 225 O 123.0 75.7 136.2 63.9 REMARK 620 6 HOH F 210 O 83.9 142.5 78.9 118.8 140.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR F 101 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH F 206 O REMARK 620 2 HOH F 209 O 66.5 REMARK 620 3 HOH F 215 O 70.6 134.0 REMARK 620 4 HOH F 218 O 84.6 84.3 75.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR F 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MS9 RELATED DB: PDB REMARK 900 RELATED ID: 4MSR RELATED DB: PDB DBREF 4MSB A 1 10 PDB 4MSB 4MSB 1 10 DBREF 4MSB B 1 10 PDB 4MSB 4MSB 1 10 DBREF 4MSB C 1 10 PDB 4MSB 4MSB 1 10 DBREF 4MSB D 1 10 PDB 4MSB 4MSB 1 10 DBREF 4MSB E 1 10 PDB 4MSB 4MSB 1 10 DBREF 4MSB F 1 10 PDB 4MSB 4MSB 1 10 SEQRES 1 A 10 C C G G C G C C G G SEQRES 1 B 10 C C G G C G C C G G SEQRES 1 C 10 C C G G C G C C G G SEQRES 1 D 10 C C G G C G C C G G SEQRES 1 E 10 C C G G C G C C G G SEQRES 1 F 10 C C G G C G C C G G HET SR A 101 1 HET SR B 101 1 HET SR C 101 1 HET SR D 101 1 HET SR E 101 1 HET SR E 102 1 HET SR F 101 1 HETNAM SR STRONTIUM ION FORMUL 7 SR 7(SR 2+) FORMUL 14 HOH *187(H2 O) LINK O2' C A 5 P G A 6 1555 1555 1.60 LINK O2' C B 5 P G B 6 1555 1555 1.59 LINK O2' C C 5 P G C 6 1555 1555 1.60 LINK O2' C D 5 P G D 6 1555 1555 1.63 LINK O2' C E 5 P G E 6 1555 1555 1.62 LINK O2' C F 5 P G F 6 1555 1555 1.60 LINK SR SR A 101 O HOH A 206 1555 1555 2.56 LINK SR SR A 101 O HOH A 209 1555 1555 2.66 LINK SR SR A 101 O HOH A 219 1555 1555 2.62 LINK SR SR A 101 O HOH A 220 1555 1555 2.65 LINK SR SR A 101 O HOH A 223 1555 1555 2.65 LINK SR SR A 101 O HOH B 202 1555 1555 2.59 LINK SR SR A 101 O HOH B 205 1555 1555 2.55 LINK SR SR A 101 O HOH B 232 1555 1555 2.71 LINK O HOH A 224 SR SR B 101 1555 1555 2.83 LINK O HOH A 233 SR SR B 101 1555 1555 2.98 LINK SR SR B 101 O HOH B 206 1555 1555 2.68 LINK SR SR B 101 O HOH B 213 1555 1555 2.54 LINK SR SR B 101 O HOH B 214 1555 1555 2.42 LINK SR SR B 101 O HOH B 231 1555 1555 2.62 LINK SR SR C 101 O HOH C 206 1555 1555 2.69 LINK SR SR C 101 O HOH C 224 1555 1555 2.69 LINK SR SR C 101 O HOH C 226 1555 1555 2.45 LINK SR SR C 101 O HOH C 227 1555 1555 2.94 LINK SR SR C 101 O HOH D 205 1555 1555 2.75 LINK SR SR C 101 O HOH D 230 1555 1555 2.48 LINK O HOH C 216 SR SR D 101 1555 1555 2.57 LINK O HOH C 218 SR SR D 101 1555 1555 2.61 LINK O HOH C 227 SR SR D 101 1555 1555 2.75 LINK SR SR D 101 O HOH D 210 1555 1555 2.60 LINK SR SR D 101 O HOH D 225 1555 1555 2.57 LINK O3' G E 10 SR SR E 102 1555 1555 2.55 LINK O2' G E 10 SR SR E 102 1555 1555 2.64 LINK SR SR E 101 O HOH E 202 1555 1555 2.47 LINK SR SR E 101 O HOH E 205 1555 1555 2.55 LINK SR SR E 101 O HOH E 210 1555 1555 2.83 LINK SR SR E 101 O HOH E 224 1555 1555 2.57 LINK SR SR E 101 O HOH E 225 1555 1555 2.57 LINK SR SR E 101 O HOH F 210 1555 1555 2.49 LINK SR SR E 102 O HOH E 226 1555 1555 2.82 LINK SR SR F 101 O HOH F 206 1555 1555 2.41 LINK SR SR F 101 O HOH F 209 1555 1555 2.65 LINK SR SR F 101 O HOH F 215 1555 1555 2.40 LINK SR SR F 101 O HOH F 218 1555 1555 2.49 SITE 1 AC1 9 HOH A 206 HOH A 209 HOH A 219 HOH A 220 SITE 2 AC1 9 HOH A 223 HOH A 233 HOH B 202 HOH B 205 SITE 3 AC1 9 HOH B 232 SITE 1 AC2 8 HOH A 224 HOH A 233 HOH A 238 G B 4 SITE 2 AC2 8 HOH B 206 HOH B 213 HOH B 214 HOH B 231 SITE 1 AC3 7 HOH C 206 HOH C 211 HOH C 224 HOH C 226 SITE 2 AC3 7 HOH C 227 HOH D 205 HOH D 230 SITE 1 AC4 7 HOH C 216 HOH C 218 HOH C 227 HOH D 210 SITE 2 AC4 7 HOH D 219 HOH D 223 HOH D 225 SITE 1 AC5 6 HOH E 202 HOH E 205 HOH E 210 HOH E 224 SITE 2 AC5 6 HOH E 225 HOH F 210 SITE 1 AC6 6 HOH A 232 HOH A 239 C E 7 G E 10 SITE 2 AC6 6 HOH E 218 HOH E 226 SITE 1 AC7 4 HOH F 206 HOH F 209 HOH F 215 HOH F 218 CRYST1 96.150 25.893 69.722 90.00 112.61 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010400 0.000000 0.004331 0.00000 SCALE2 0.000000 0.038620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015537 0.00000