HEADER APOPTOSIS INHIBITOR 19-SEP-13 4MTI
TITLE CRYSTAL STRUCTURE OF CIAP1 BIR3 BOUND TO T3258042
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 2;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: BIR3 (UNP RESIDUES 260-352);
COMPND 5 SYNONYM: C-IAP1, IAP HOMOLOG B, INHIBITOR OF APOPTOSIS PROTEIN 2,
COMPND 6 IAP-2, HIAP-2, HIAP2, RING FINGER PROTEIN 48, TNFR2-TRAF-SIGNALING
COMPND 7 COMPLEX PROTEIN 2;
COMPND 8 EC: 6.3.2.-;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: API1, BIRC2, IAP2, MIHB, RNF48;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BI21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28
KEYWDS RING-TYPE ZINC FINGER, LIGASE, APOPTOSIS INHIBITOR
EXPDTA X-RAY DIFFRACTION
AUTHOR G.P.SNELL,D.R.DOUGAN
REVDAT 2 28-FEB-24 4MTI 1 REMARK SEQADV LINK
REVDAT 1 11-DEC-13 4MTI 0
JRNL AUTH Z.SHIOKAWA,K.HASHIMOTO,B.SAITO,Y.OGURO,H.SUMI,M.YABUKI,
JRNL AUTH 2 M.YOSHIMATSU,Y.KOSUGI,Y.DEBORI,N.MORISHITA,D.R.DOUGAN,
JRNL AUTH 3 G.P.SNELL,S.YOSHIDA,T.ISHIKAWA
JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL ACTIVITIES OF NOVEL
JRNL TITL 2 HEXAHYDROPYRAZINO[1,2-A]INDOLE DERIVATIVES AS POTENT
JRNL TITL 3 INHIBITORS OF APOPTOSIS (IAP) PROTEINS ANTAGONISTS WITH
JRNL TITL 4 IMPROVED MEMBRANE PERMEABILITY ACROSS MDR1 EXPRESSING CELLS.
JRNL REF BIOORG.MED.CHEM. V. 21 7938 2013
JRNL REFN ISSN 0968-0896
JRNL PMID 24169315
JRNL DOI 10.1016/J.BMC.2013.09.067
REMARK 2
REMARK 2 RESOLUTION. 2.15 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7
REMARK 3 NUMBER OF REFLECTIONS : 13442
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.198
REMARK 3 R VALUE (WORKING SET) : 0.195
REMARK 3 FREE R VALUE : 0.267
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 724
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21
REMARK 3 REFLECTION IN BIN (WORKING SET) : 815
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.13
REMARK 3 BIN R VALUE (WORKING SET) : 0.2360
REMARK 3 BIN FREE R VALUE SET COUNT : 45
REMARK 3 BIN FREE R VALUE : 0.2700
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1508
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 80
REMARK 3 SOLVENT ATOMS : 124
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.77
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -2.17000
REMARK 3 B22 (A**2) : -3.22000
REMARK 3 B33 (A**2) : 5.39000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.223
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.369
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1660 ; 0.010 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 1128 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2246 ; 1.235 ; 1.973
REMARK 3 BOND ANGLES OTHERS (DEGREES): 2692 ; 0.895 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 4.727 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;31.293 ;22.500
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 253 ;15.165 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.308 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.070 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1825 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 388 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 255 A 346
REMARK 3 ORIGIN FOR THE GROUP (A): 0.1886 17.9381 26.3933
REMARK 3 T TENSOR
REMARK 3 T11: 0.0459 T22: 0.0351
REMARK 3 T33: 0.0991 T12: 0.0026
REMARK 3 T13: -0.0532 T23: -0.0106
REMARK 3 L TENSOR
REMARK 3 L11: 1.6703 L22: 3.9847
REMARK 3 L33: 3.7826 L12: 0.6497
REMARK 3 L13: 1.3545 L23: 1.9075
REMARK 3 S TENSOR
REMARK 3 S11: -0.1261 S12: 0.0772 S13: 0.1162
REMARK 3 S21: -0.2509 S22: 0.0318 S23: 0.1046
REMARK 3 S31: -0.1277 S32: -0.0380 S33: 0.0943
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 257 B 346
REMARK 3 ORIGIN FOR THE GROUP (A): 13.3566 27.6562 48.8844
REMARK 3 T TENSOR
REMARK 3 T11: 0.0242 T22: 0.1326
REMARK 3 T33: 0.0891 T12: -0.0244
REMARK 3 T13: -0.0369 T23: 0.0574
REMARK 3 L TENSOR
REMARK 3 L11: 2.1896 L22: 6.5433
REMARK 3 L33: 5.3540 L12: 0.0509
REMARK 3 L13: -0.3000 L23: -4.0669
REMARK 3 S TENSOR
REMARK 3 S11: -0.0229 S12: -0.2147 S13: -0.1709
REMARK 3 S21: 0.2254 S22: -0.2661 S23: -0.1274
REMARK 3 S31: -0.2261 S32: 0.3316 S33: 0.2890
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 4MTI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-13.
REMARK 100 THE DEPOSITION ID IS D_1000082345.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-APR-10
REMARK 200 TEMPERATURE (KELVIN) : 95
REMARK 200 PH : 8.2
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 5.0.3
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.976
REMARK 200 MONOCHROMATOR : SINGLE-CRYSTAL SI(220)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14267
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2
REMARK 200 DATA REDUNDANCY : 4.300
REMARK 200 R MERGE (I) : 0.15000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19
REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0
REMARK 200 DATA REDUNDANCY IN SHELL : 3.50
REMARK 200 R MERGE FOR SHELL (I) : 0.55000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.86
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M NA CL, 0.06M TRIS_BASE, 0.04M
REMARK 280 TRIS CL, PH 8.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.56850
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.18650
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.23800
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.18650
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.56850
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.23800
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 232
REMARK 465 GLY A 233
REMARK 465 SER A 234
REMARK 465 SER A 235
REMARK 465 HIS A 236
REMARK 465 HIS A 237
REMARK 465 HIS A 238
REMARK 465 HIS A 239
REMARK 465 HIS A 240
REMARK 465 HIS A 241
REMARK 465 SER A 242
REMARK 465 SER A 243
REMARK 465 GLY A 244
REMARK 465 GLU A 245
REMARK 465 ASN A 246
REMARK 465 LEU A 247
REMARK 465 TYR A 248
REMARK 465 PHE A 249
REMARK 465 GLN A 250
REMARK 465 GLY A 251
REMARK 465 GLY A 252
REMARK 465 MET B 232
REMARK 465 GLY B 233
REMARK 465 SER B 234
REMARK 465 SER B 235
REMARK 465 HIS B 236
REMARK 465 HIS B 237
REMARK 465 HIS B 238
REMARK 465 HIS B 239
REMARK 465 HIS B 240
REMARK 465 HIS B 241
REMARK 465 SER B 242
REMARK 465 SER B 243
REMARK 465 GLY B 244
REMARK 465 GLU B 245
REMARK 465 ASN B 246
REMARK 465 LEU B 247
REMARK 465 TYR B 248
REMARK 465 PHE B 249
REMARK 465 GLN B 250
REMARK 465 GLY B 251
REMARK 465 GLY B 252
REMARK 465 SER B 253
REMARK 465 SER B 254
REMARK 465 ILE B 255
REMARK 465 SER B 256
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 LYS A 299 NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 315 O HOH A 551 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 295 -131.28 55.55
REMARK 500 ASN B 295 -121.28 50.35
REMARK 500 CYS B 302 -61.54 -91.73
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A 300 SG
REMARK 620 2 CYS A 303 SG 109.6
REMARK 620 3 HIS A 320 NE2 100.3 117.0
REMARK 620 4 CYS A 327 SG 112.0 110.6 107.1
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN B 401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS B 300 SG
REMARK 620 2 CYS B 303 SG 108.8
REMARK 620 3 HIS B 320 NE2 101.9 116.3
REMARK 620 4 CYS B 327 SG 113.3 110.8 105.5
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2DX A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2DX B 402
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4MU7 RELATED DB: PDB
DBREF 4MTI A 254 346 UNP Q13490 BIRC2_HUMAN 260 352
DBREF 4MTI B 254 346 UNP Q13490 BIRC2_HUMAN 260 352
SEQADV 4MTI MET A 232 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY A 233 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER A 234 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER A 235 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS A 236 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS A 237 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS A 238 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS A 239 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS A 240 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS A 241 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER A 242 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER A 243 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY A 244 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLU A 245 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI ASN A 246 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI LEU A 247 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI TYR A 248 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI PHE A 249 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLN A 250 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY A 251 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY A 252 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER A 253 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI MET B 232 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY B 233 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER B 234 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER B 235 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS B 236 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS B 237 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS B 238 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS B 239 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS B 240 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI HIS B 241 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER B 242 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER B 243 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY B 244 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLU B 245 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI ASN B 246 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI LEU B 247 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI TYR B 248 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI PHE B 249 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLN B 250 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY B 251 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI GLY B 252 UNP Q13490 EXPRESSION TAG
SEQADV 4MTI SER B 253 UNP Q13490 EXPRESSION TAG
SEQRES 1 A 115 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 115 GLU ASN LEU TYR PHE GLN GLY GLY SER SER ILE SER ASN
SEQRES 3 A 115 LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR PHE
SEQRES 4 A 115 MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU GLN
SEQRES 5 A 115 LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN ASP
SEQRES 6 A 115 ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG CYS
SEQRES 7 A 115 TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA LYS
SEQRES 8 A 115 TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS GLY
SEQRES 9 A 115 GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR
SEQRES 1 B 115 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 B 115 GLU ASN LEU TYR PHE GLN GLY GLY SER SER ILE SER ASN
SEQRES 3 B 115 LEU SER MET GLN THR HIS ALA ALA ARG MET ARG THR PHE
SEQRES 4 B 115 MET TYR TRP PRO SER SER VAL PRO VAL GLN PRO GLU GLN
SEQRES 5 B 115 LEU ALA SER ALA GLY PHE TYR TYR VAL GLY ARG ASN ASP
SEQRES 6 B 115 ASP VAL LYS CYS PHE CYS CYS ASP GLY GLY LEU ARG CYS
SEQRES 7 B 115 TRP GLU SER GLY ASP ASP PRO TRP VAL GLU HIS ALA LYS
SEQRES 8 B 115 TRP PHE PRO ARG CYS GLU PHE LEU ILE ARG MET LYS GLY
SEQRES 9 B 115 GLN GLU PHE VAL ASP GLU ILE GLN GLY ARG TYR
HET ZN A 401 1
HET 2DX A 402 39
HET ZN B 401 1
HET 2DX B 402 39
HETNAM ZN ZINC ION
HETNAM 2DX (3S,8AR)-2-[(2S)-2-CYCLOHEXYL-2-{[(2S)-2-(METHYLAMINO)
HETNAM 2 2DX BUTANOYL]AMINO}ACETYL]-N-[(4R)-3,4-DIHYDRO-2H-CHROMEN-
HETNAM 3 2DX 4-YL]OCTAHYDROPYRROLO[1,2-A]PYRAZINE-3-CARBOXAMIDE
FORMUL 3 ZN 2(ZN 2+)
FORMUL 4 2DX 2(C30 H45 N5 O4)
FORMUL 7 HOH *124(H2 O)
HELIX 1 1 ASN A 257 GLN A 261 5 5
HELIX 2 2 THR A 262 THR A 269 1 8
HELIX 3 3 PHE A 270 TRP A 273 5 4
HELIX 4 4 GLN A 280 ALA A 287 1 8
HELIX 5 5 ASP A 315 PHE A 324 1 10
HELIX 6 6 CYS A 327 GLY A 335 1 9
HELIX 7 7 GLY A 335 GLY A 344 1 10
HELIX 8 8 ASN B 257 GLN B 261 5 5
HELIX 9 9 THR B 262 THR B 269 1 8
HELIX 10 10 PHE B 270 TRP B 273 5 4
HELIX 11 11 GLN B 280 ALA B 287 1 8
HELIX 12 12 ASP B 315 PHE B 324 1 10
HELIX 13 13 CYS B 327 GLN B 343 1 17
SHEET 1 A 3 PHE A 289 TYR A 291 0
SHEET 2 A 3 VAL A 298 CYS A 300 -1 O LYS A 299 N TYR A 290
SHEET 3 A 3 GLY A 306 LEU A 307 -1 O LEU A 307 N VAL A 298
SHEET 1 B 3 PHE B 289 TYR B 291 0
SHEET 2 B 3 VAL B 298 CYS B 300 -1 O LYS B 299 N TYR B 290
SHEET 3 B 3 GLY B 306 LEU B 307 -1 O LEU B 307 N VAL B 298
LINK SG CYS A 300 ZN ZN A 401 1555 1555 2.36
LINK SG CYS A 303 ZN ZN A 401 1555 1555 2.40
LINK NE2 HIS A 320 ZN ZN A 401 1555 1555 2.12
LINK SG CYS A 327 ZN ZN A 401 1555 1555 2.36
LINK SG CYS B 300 ZN ZN B 401 1555 1555 2.39
LINK SG CYS B 303 ZN ZN B 401 1555 1555 2.25
LINK NE2 HIS B 320 ZN ZN B 401 1555 1555 2.00
LINK SG CYS B 327 ZN ZN B 401 1555 1555 2.31
SITE 1 AC1 4 CYS A 300 CYS A 303 HIS A 320 CYS A 327
SITE 1 AC2 14 ASP A 297 VAL A 298 GLY A 306 LEU A 307
SITE 2 AC2 14 ARG A 308 CYS A 309 TRP A 310 GLU A 311
SITE 3 AC2 14 ASP A 314 TRP A 323 HOH A 511 HOH A 528
SITE 4 AC2 14 HOH A 531 HOH A 575
SITE 1 AC3 4 CYS B 300 CYS B 303 HIS B 320 CYS B 327
SITE 1 AC4 10 ARG A 268 MET A 271 GLN B 261 GLY B 306
SITE 2 AC4 10 LEU B 307 ARG B 308 CYS B 309 ASP B 314
SITE 3 AC4 10 GLU B 319 HOH B 541
CRYST1 31.137 68.476 122.373 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.032116 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014604 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008172 0.00000