HEADER LIGASE/LIGASE INHIBITOR 20-SEP-13 4MTZ TITLE STRUCTURE OF XIAP-BIR1 IN COMPLEX WITH NF023 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE XIAP; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 10-99; COMPND 5 SYNONYM: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4, IAP-LIKE COMPND 6 PROTEIN, ILP, HILP, INHIBITOR OF APOPTOSIS PROTEIN 3, IAP-3, HIAP-3, COMPND 7 HIAP3, X-LINKED INHIBITOR OF APOPTOSIS PROTEIN, X-LINKED IAP; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: XIAP, API3, BIRC4, IAP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIR DOMAIN, ANTI-APOPTOTIC, TAB1, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.COSSU,M.MILANI,S.GRASSI,E.MASTRANGELO,M.BOLOGNESI REVDAT 3 20-SEP-23 4MTZ 1 REMARK LINK REVDAT 2 29-JAN-20 4MTZ 1 REMARK SEQADV REVDAT 1 24-SEP-14 4MTZ 0 JRNL AUTH F.COSSU,M.MILANI,S.GRASSI,F.MALVEZZI,A.CORTI,M.BOLOGNESI, JRNL AUTH 2 E.MASTRANGELO JRNL TITL PROTEIN-PROTEIN INTERACTIONS IN NFKB PATHWAY: NOVEL TOOLS TO JRNL TITL 2 PROMOTE APOPTOSIS IN CANCER THERAPY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 141 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.62000 REMARK 3 B22 (A**2) : 3.58000 REMARK 3 B33 (A**2) : -1.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2678 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2311 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3655 ; 1.729 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5260 ; 3.705 ; 3.009 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 5.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;31.058 ;21.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;13.238 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.079 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3082 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 760 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 1.235 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2427 ; 2.256 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1116 ; 3.114 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1172 ; 4.964 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 76.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2POP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20000, 0.1 M BICINE, PH 9.0 REMARK 280 AND 2% (V/V) 1,4-DIOXANE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.10450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 LYS A 10 REMARK 465 THR A 11 REMARK 465 CYS A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 ALA A 15 REMARK 465 ASP A 16 REMARK 465 ILE A 17 REMARK 465 ASN A 18 REMARK 465 LYS A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 99 REMARK 465 MET B 989 REMARK 465 GLY B 990 REMARK 465 SER B 991 REMARK 465 SER B 992 REMARK 465 HIS B 993 REMARK 465 HIS B 994 REMARK 465 HIS B 995 REMARK 465 HIS B 996 REMARK 465 HIS B 997 REMARK 465 HIS B 998 REMARK 465 SER B 999 REMARK 465 SER B 1000 REMARK 465 GLY B 1001 REMARK 465 LEU B 1002 REMARK 465 VAL B 1003 REMARK 465 PRO B 1004 REMARK 465 GLN B 1005 REMARK 465 GLY B 1006 REMARK 465 SER B 1007 REMARK 465 HIS B 1008 REMARK 465 MET B 1009 REMARK 465 LYS B 1010 REMARK 465 THR B 1011 REMARK 465 CYS B 1012 REMARK 465 VAL B 1013 REMARK 465 PRO B 1014 REMARK 465 ALA B 1015 REMARK 465 ASP B 1016 REMARK 465 ILE B 1017 REMARK 465 ASN B 1018 REMARK 465 LYS B 1019 REMARK 465 GLU B 1020 REMARK 465 GLU B 1021 REMARK 465 GLU B 1099 REMARK 465 MET C 2989 REMARK 465 GLY C 2990 REMARK 465 SER C 2991 REMARK 465 SER C 2992 REMARK 465 HIS C 2993 REMARK 465 HIS C 2994 REMARK 465 HIS C 2995 REMARK 465 HIS C 2996 REMARK 465 HIS C 2997 REMARK 465 HIS C 2998 REMARK 465 SER C 2999 REMARK 465 SER C 3000 REMARK 465 GLY C 3001 REMARK 465 LEU C 3002 REMARK 465 VAL C 3003 REMARK 465 PRO C 3004 REMARK 465 GLN C 3005 REMARK 465 GLY C 3006 REMARK 465 SER C 3007 REMARK 465 HIS C 3008 REMARK 465 MET C 3009 REMARK 465 LYS C 3010 REMARK 465 THR C 3011 REMARK 465 CYS C 3012 REMARK 465 VAL C 3013 REMARK 465 PRO C 3014 REMARK 465 ALA C 3015 REMARK 465 ASP C 3016 REMARK 465 ILE C 3017 REMARK 465 ASN C 3018 REMARK 465 LYS C 3019 REMARK 465 GLU C 3020 REMARK 465 GLU C 3021 REMARK 465 GLU C 3099 REMARK 465 MET D 2989 REMARK 465 GLY D 2990 REMARK 465 SER D 2991 REMARK 465 SER D 2992 REMARK 465 HIS D 2993 REMARK 465 HIS D 2994 REMARK 465 HIS D 2995 REMARK 465 HIS D 2996 REMARK 465 HIS D 2997 REMARK 465 HIS D 2998 REMARK 465 SER D 2999 REMARK 465 SER D 3000 REMARK 465 GLY D 3001 REMARK 465 LEU D 3002 REMARK 465 VAL D 3003 REMARK 465 PRO D 3004 REMARK 465 GLN D 3005 REMARK 465 GLY D 3006 REMARK 465 SER D 3007 REMARK 465 HIS D 3008 REMARK 465 MET D 3009 REMARK 465 LYS D 3010 REMARK 465 THR D 3011 REMARK 465 CYS D 3012 REMARK 465 VAL D 3013 REMARK 465 PRO D 3014 REMARK 465 ALA D 3015 REMARK 465 ASP D 3016 REMARK 465 ILE D 3017 REMARK 465 ASN D 3018 REMARK 465 LYS D 3019 REMARK 465 GLU D 3020 REMARK 465 GLU D 3021 REMARK 465 GLU D 3099 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 97 49.15 -101.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D3243 DISTANCE = 7.19 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 CYS A 66 SG 107.7 REMARK 620 3 CYS A 66 SG 108.7 62.4 REMARK 620 4 HIS A 83 NE2 93.4 119.1 156.6 REMARK 620 5 CYS A 90 SG 114.5 112.7 55.8 108.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1063 SG REMARK 620 2 CYS B1066 SG 109.5 REMARK 620 3 HIS B1083 NE2 104.0 108.6 REMARK 620 4 CYS B1090 SG 110.8 116.6 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C3101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C3063 SG REMARK 620 2 CYS C3066 SG 106.9 REMARK 620 3 HIS C3083 NE2 94.8 110.0 REMARK 620 4 CYS C3090 SG 111.1 113.4 118.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D3101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D3063 SG REMARK 620 2 CYS D3066 SG 110.0 REMARK 620 3 HIS D3083 NE2 93.1 116.9 REMARK 620 4 CYS D3090 SG 109.3 111.2 114.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 3101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0BU C 3102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 3101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0BU D 3102 DBREF 4MTZ A 10 99 UNP P98170 XIAP_HUMAN 10 99 DBREF 4MTZ B 1010 1099 UNP P98170 XIAP_HUMAN 10 99 DBREF 4MTZ D 3010 3099 UNP P98170 XIAP_HUMAN 10 99 DBREF 4MTZ C 3010 3099 UNP P98170 XIAP_HUMAN 10 99 SEQADV 4MTZ MET A -11 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY A -10 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER A -9 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER A -8 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS A -7 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS A -6 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS A -5 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS A -4 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS A -3 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS A -2 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER A -1 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER A 0 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY A 1 UNP P98170 EXPRESSION TAG SEQADV 4MTZ LEU A 2 UNP P98170 EXPRESSION TAG SEQADV 4MTZ VAL A 3 UNP P98170 EXPRESSION TAG SEQADV 4MTZ PRO A 4 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLN A 5 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY A 6 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER A 7 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS A 8 UNP P98170 EXPRESSION TAG SEQADV 4MTZ MET A 9 UNP P98170 EXPRESSION TAG SEQADV 4MTZ MET B 989 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY B 990 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER B 991 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER B 992 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS B 993 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS B 994 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS B 995 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS B 996 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS B 997 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS B 998 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER B 999 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER B 1000 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY B 1001 UNP P98170 EXPRESSION TAG SEQADV 4MTZ LEU B 1002 UNP P98170 EXPRESSION TAG SEQADV 4MTZ VAL B 1003 UNP P98170 EXPRESSION TAG SEQADV 4MTZ PRO B 1004 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLN B 1005 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY B 1006 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER B 1007 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS B 1008 UNP P98170 EXPRESSION TAG SEQADV 4MTZ MET B 1009 UNP P98170 EXPRESSION TAG SEQADV 4MTZ MET D 2989 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY D 2990 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER D 2991 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER D 2992 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS D 2993 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS D 2994 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS D 2995 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS D 2996 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS D 2997 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS D 2998 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER D 2999 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER D 3000 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY D 3001 UNP P98170 EXPRESSION TAG SEQADV 4MTZ LEU D 3002 UNP P98170 EXPRESSION TAG SEQADV 4MTZ VAL D 3003 UNP P98170 EXPRESSION TAG SEQADV 4MTZ PRO D 3004 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLN D 3005 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY D 3006 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER D 3007 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS D 3008 UNP P98170 EXPRESSION TAG SEQADV 4MTZ MET D 3009 UNP P98170 EXPRESSION TAG SEQADV 4MTZ MET C 2989 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY C 2990 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER C 2991 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER C 2992 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS C 2993 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS C 2994 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS C 2995 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS C 2996 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS C 2997 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS C 2998 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER C 2999 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER C 3000 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY C 3001 UNP P98170 EXPRESSION TAG SEQADV 4MTZ LEU C 3002 UNP P98170 EXPRESSION TAG SEQADV 4MTZ VAL C 3003 UNP P98170 EXPRESSION TAG SEQADV 4MTZ PRO C 3004 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLN C 3005 UNP P98170 EXPRESSION TAG SEQADV 4MTZ GLY C 3006 UNP P98170 EXPRESSION TAG SEQADV 4MTZ SER C 3007 UNP P98170 EXPRESSION TAG SEQADV 4MTZ HIS C 3008 UNP P98170 EXPRESSION TAG SEQADV 4MTZ MET C 3009 UNP P98170 EXPRESSION TAG SEQRES 1 A 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 A 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 A 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 A 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 A 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 A 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 A 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 A 111 ILE ASN GLY PHE TYR LEU GLU SEQRES 1 B 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 B 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 B 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 B 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 B 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 B 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 B 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 B 111 ILE ASN GLY PHE TYR LEU GLU SEQRES 1 C 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 C 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 C 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 C 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 C 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 C 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 C 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 C 111 ILE ASN GLY PHE TYR LEU GLU SEQRES 1 D 111 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 111 LEU VAL PRO GLN GLY SER HIS MET LYS THR CYS VAL PRO SEQRES 3 D 111 ALA ASP ILE ASN LYS GLU GLU GLU PHE VAL GLU GLU PHE SEQRES 4 D 111 ASN ARG LEU LYS THR PHE ALA ASN PHE PRO SER GLY SER SEQRES 5 D 111 PRO VAL SER ALA SER THR LEU ALA ARG ALA GLY PHE LEU SEQRES 6 D 111 TYR THR GLY GLU GLY ASP THR VAL ARG CYS PHE SER CYS SEQRES 7 D 111 HIS ALA ALA VAL ASP ARG TRP GLN TYR GLY ASP SER ALA SEQRES 8 D 111 VAL GLY ARG HIS ARG LYS VAL SER PRO ASN CYS ARG PHE SEQRES 9 D 111 ILE ASN GLY PHE TYR LEU GLU HET ZN A 200 1 HET ZN B1101 1 HET SO4 B1102 5 HET ZN C3101 1 HET 0BU C3102 66 HET ZN D3101 1 HET 0BU D3102 66 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM 0BU 8-({3-[({3-[(4,6,8-TRISULFONAPHTHALEN-1-YL) HETNAM 2 0BU CARBAMOYL]PHENYL}CARBAMOYL)AMINO]BENZOYL}AMINO) HETNAM 3 0BU NAPHTHALENE-1,3,5-TRISULFONIC ACID HETSYN 0BU NF023 FORMUL 5 ZN 4(ZN 2+) FORMUL 7 SO4 O4 S 2- FORMUL 9 0BU 2(C35 H26 N4 O21 S6) FORMUL 12 HOH *136(H2 O) HELIX 1 1 GLU A 25 LYS A 31 1 7 HELIX 2 2 THR A 32 ALA A 34 5 3 HELIX 3 3 SER A 43 ALA A 50 1 8 HELIX 4 4 SER A 78 SER A 87 1 10 HELIX 5 5 GLU B 1025 THR B 1032 1 8 HELIX 6 6 SER B 1043 ALA B 1050 1 8 HELIX 7 7 SER B 1078 SER B 1087 1 10 HELIX 8 8 GLU C 3025 THR C 3032 1 8 HELIX 9 9 SER C 3043 ALA C 3050 1 8 HELIX 10 10 SER C 3078 SER C 3087 1 10 HELIX 11 11 GLU D 3025 THR D 3032 1 8 HELIX 12 12 SER D 3043 ALA D 3050 1 8 HELIX 13 13 SER D 3078 SER D 3087 1 10 SHEET 1 A 3 PHE A 52 TYR A 54 0 SHEET 2 A 3 VAL A 61 CYS A 63 -1 O ARG A 62 N LEU A 53 SHEET 3 A 3 ALA A 69 VAL A 70 -1 O VAL A 70 N VAL A 61 SHEET 1 B 3 PHE B1052 TYR B1054 0 SHEET 2 B 3 VAL B1061 CYS B1063 -1 O ARG B1062 N LEU B1053 SHEET 3 B 3 ALA B1069 VAL B1070 -1 O VAL B1070 N VAL B1061 SHEET 1 C 3 PHE C3052 TYR C3054 0 SHEET 2 C 3 VAL C3061 CYS C3063 -1 O ARG C3062 N LEU C3053 SHEET 3 C 3 ALA C3069 VAL C3070 -1 O VAL C3070 N VAL C3061 SHEET 1 D 3 PHE D3052 TYR D3054 0 SHEET 2 D 3 VAL D3061 CYS D3063 -1 O ARG D3062 N LEU D3053 SHEET 3 D 3 ALA D3069 VAL D3070 -1 O VAL D3070 N VAL D3061 SSBOND 1 CYS A 66 CYS A 90 1555 1555 2.24 LINK SG CYS A 63 ZN ZN A 200 1555 1555 2.25 LINK SG ACYS A 66 ZN ZN A 200 1555 1555 2.16 LINK SG BCYS A 66 ZN ZN A 200 1555 1555 2.42 LINK NE2 HIS A 83 ZN ZN A 200 1555 1555 2.21 LINK SG CYS A 90 ZN ZN A 200 1555 1555 2.35 LINK SG CYS B1063 ZN ZN B1101 1555 1555 2.30 LINK SG CYS B1066 ZN ZN B1101 1555 1555 2.15 LINK NE2 HIS B1083 ZN ZN B1101 1555 1555 2.15 LINK SG CYS B1090 ZN ZN B1101 1555 1555 2.21 LINK SG CYS C3063 ZN ZN C3101 1555 1555 2.37 LINK SG CYS C3066 ZN ZN C3101 1555 1555 2.26 LINK NE2 HIS C3083 ZN ZN C3101 1555 1555 2.11 LINK SG CYS C3090 ZN ZN C3101 1555 1555 2.34 LINK SG CYS D3063 ZN ZN D3101 1555 1555 2.31 LINK SG CYS D3066 ZN ZN D3101 1555 1555 2.23 LINK NE2 HIS D3083 ZN ZN D3101 1555 1555 2.14 LINK SG CYS D3090 ZN ZN D3101 1555 1555 2.40 SITE 1 AC1 4 CYS A 63 CYS A 66 HIS A 83 CYS A 90 SITE 1 AC2 4 CYS B1063 CYS B1066 HIS B1083 CYS B1090 SITE 1 AC3 5 ALA B1069 ASP B1071 HOH B1205 ARG D3082 SITE 2 AC3 5 VAL D3086 SITE 1 AC4 4 CYS C3063 CYS C3066 HIS C3083 CYS C3090 SITE 1 AC5 15 ARG A 62 CYS A 66 HIS A 67 SER A 87 SITE 2 AC5 15 PRO A 88 ASN A 89 ARG C3062 CYS C3066 SITE 3 AC5 15 HIS C3067 SER C3087 PRO C3088 ASN C3089 SITE 4 AC5 15 HOH C3219 HOH C3222 HOH C3226 SITE 1 AC6 4 CYS D3063 CYS D3066 HIS D3083 CYS D3090 SITE 1 AC7 16 ARG B1062 CYS B1066 HIS B1067 SER B1087 SITE 2 AC7 16 PRO B1088 ASN B1089 HOH B1217 ARG D3062 SITE 3 AC7 16 CYS D3066 HIS D3067 SER D3087 PRO D3088 SITE 4 AC7 16 ASN D3089 HOH D3222 HOH D3228 HOH D3234 CRYST1 36.854 76.209 71.191 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014047 0.00000