data_4MU5 # _entry.id 4MU5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4MU5 RCSB RCSB082368 WWPDB D_1000082368 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Q1F 'Crystal structure of murine neuroglobin' unspecified PDB 4NZI . unspecified PDB 4O1T . unspecified PDB 4O2G . unspecified PDB 4O35 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MU5 _pdbx_database_status.recvd_initial_deposition_date 2013-09-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vallone, B.' 1 'Avella, G.' 2 'Savino, C.' 3 'Ardiccioni, C.' 4 'Brunori, M.' 5 # _citation.id primary _citation.title 'Engineering the internal cavity of neuroglobin demonstrates the role of the haem-sliding mechanism.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 70 _citation.page_first 1640 _citation.page_last 1648 _citation.year 2014 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24914975 _citation.pdbx_database_id_DOI 10.1107/S1399004714007032 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Avella, G.' 1 primary 'Ardiccioni, C.' 2 primary 'Scaglione, A.' 3 primary 'Moschetti, T.' 4 primary 'Rondinelli, C.' 5 primary 'Montemiglio, L.C.' 6 primary 'Savino, C.' 7 primary 'Giuffre, A.' 8 primary 'Brunori, M.' 9 primary 'Vallone, B.' 10 # _cell.entry_id 4MU5 _cell.length_a 87.636 _cell.length_b 87.636 _cell.length_c 115.217 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MU5 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Neuroglobin 17361.586 1 ? 'C55S, C120S, M144W' 'UNP RESIDUES 3-151' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 93 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMERPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVT NVEDLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAWSRGWDGE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMERPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVT NVEDLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAWSRGWDGE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLU n 1 6 ARG n 1 7 PRO n 1 8 GLU n 1 9 SER n 1 10 GLU n 1 11 LEU n 1 12 ILE n 1 13 ARG n 1 14 GLN n 1 15 SER n 1 16 TRP n 1 17 ARG n 1 18 VAL n 1 19 VAL n 1 20 SER n 1 21 ARG n 1 22 SER n 1 23 PRO n 1 24 LEU n 1 25 GLU n 1 26 HIS n 1 27 GLY n 1 28 THR n 1 29 VAL n 1 30 LEU n 1 31 PHE n 1 32 ALA n 1 33 ARG n 1 34 LEU n 1 35 PHE n 1 36 ALA n 1 37 LEU n 1 38 GLU n 1 39 PRO n 1 40 SER n 1 41 LEU n 1 42 LEU n 1 43 PRO n 1 44 LEU n 1 45 PHE n 1 46 GLN n 1 47 TYR n 1 48 ASN n 1 49 GLY n 1 50 ARG n 1 51 GLN n 1 52 PHE n 1 53 SER n 1 54 SER n 1 55 PRO n 1 56 GLU n 1 57 ASP n 1 58 SER n 1 59 LEU n 1 60 SER n 1 61 SER n 1 62 PRO n 1 63 GLU n 1 64 PHE n 1 65 LEU n 1 66 ASP n 1 67 HIS n 1 68 ILE n 1 69 ARG n 1 70 LYS n 1 71 VAL n 1 72 MET n 1 73 LEU n 1 74 VAL n 1 75 ILE n 1 76 ASP n 1 77 ALA n 1 78 ALA n 1 79 VAL n 1 80 THR n 1 81 ASN n 1 82 VAL n 1 83 GLU n 1 84 ASP n 1 85 LEU n 1 86 SER n 1 87 SER n 1 88 LEU n 1 89 GLU n 1 90 GLU n 1 91 TYR n 1 92 LEU n 1 93 THR n 1 94 SER n 1 95 LEU n 1 96 GLY n 1 97 ARG n 1 98 LYS n 1 99 HIS n 1 100 ARG n 1 101 ALA n 1 102 VAL n 1 103 GLY n 1 104 VAL n 1 105 ARG n 1 106 LEU n 1 107 SER n 1 108 SER n 1 109 PHE n 1 110 SER n 1 111 THR n 1 112 VAL n 1 113 GLY n 1 114 GLU n 1 115 SER n 1 116 LEU n 1 117 LEU n 1 118 TYR n 1 119 MET n 1 120 LEU n 1 121 GLU n 1 122 LYS n 1 123 SER n 1 124 LEU n 1 125 GLY n 1 126 PRO n 1 127 ASP n 1 128 PHE n 1 129 THR n 1 130 PRO n 1 131 ALA n 1 132 THR n 1 133 ARG n 1 134 THR n 1 135 ALA n 1 136 TRP n 1 137 SER n 1 138 ARG n 1 139 LEU n 1 140 TYR n 1 141 GLY n 1 142 ALA n 1 143 VAL n 1 144 VAL n 1 145 GLN n 1 146 ALA n 1 147 TRP n 1 148 SER n 1 149 ARG n 1 150 GLY n 1 151 TRP n 1 152 ASP n 1 153 GLY n 1 154 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Ngb _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NGB_MOUSE _struct_ref.pdbx_db_accession Q9ER97 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MERPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNGRQFSSPEDCLSSPEFLDHIRKVMLVIDAAVTNVE DLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKCLGPDFTPATRTAWSRLYGAVVQAMSRGWDGE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MU5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 154 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ER97 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 151 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4MU5 GLY A 1 ? UNP Q9ER97 ? ? 'EXPRESSION TAG' -2 1 1 4MU5 SER A 2 ? UNP Q9ER97 ? ? 'EXPRESSION TAG' -1 2 1 4MU5 HIS A 3 ? UNP Q9ER97 ? ? 'EXPRESSION TAG' 0 3 1 4MU5 SER A 58 ? UNP Q9ER97 CYS 55 'ENGINEERED MUTATION' 55 4 1 4MU5 SER A 123 ? UNP Q9ER97 CYS 120 'ENGINEERED MUTATION' 120 5 1 4MU5 TRP A 147 ? UNP Q9ER97 MET 144 'ENGINEERED MUTATION' 144 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4MU5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M MES, pH6.5, 1.6M AS, 10% dioxane, VAPOR DIFFUSION, HANGING DROP, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-02-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si-111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.932 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.932 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4MU5 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 45.89 _reflns.d_resolution_high 1.8 _reflns.number_obs 15838 _reflns.number_all 16161 _reflns.percent_possible_obs 98.89 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.864 _reflns_shell.percent_possible_all 98.05 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4MU5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15831 _refine.ls_number_reflns_all 16161 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.887 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs 98.85 _refine.ls_R_factor_obs 0.2011 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1987 _refine.ls_R_factor_R_free 0.2492 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.96 _refine.ls_number_reflns_R_free 785 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 26.08 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1178 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1319 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 45.887 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1473 'X-RAY DIFFRACTION' ? f_angle_d 1.431 ? ? 2054 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.763 ? ? 547 'X-RAY DIFFRACTION' ? f_chiral_restr 0.088 ? ? 204 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 257 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.800 1.9129 2447 0.2330 98.00 0.2511 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.9129 2.0606 2459 0.2187 99.00 0.2797 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.0606 2.2680 2483 0.2029 99.00 0.2664 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.2680 2.5961 2475 0.2015 99.00 0.2538 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.5961 3.2707 2561 0.2099 100.00 0.2656 . . 128 . . . . 'X-RAY DIFFRACTION' . 3.2707 45.9014 2621 0.1831 99.00 0.2240 . . 115 . . . . # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4MU5 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 4MU5 _struct.title 'Crystal structure of murine neuroglobin mutant M144W' _struct.pdbx_descriptor Neuroglobin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MU5 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'Globin, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 6 ? ARG A 21 ? ARG A 3 ARG A 18 1 ? 16 HELX_P HELX_P2 2 SER A 22 ? GLU A 38 ? SER A 19 GLU A 35 1 ? 17 HELX_P HELX_P3 3 PRO A 39 ? PHE A 45 ? PRO A 36 PHE A 42 5 ? 7 HELX_P HELX_P4 4 GLN A 46 ? ARG A 50 ? GLN A 43 ARG A 47 5 ? 5 HELX_P HELX_P5 5 SER A 54 ? LEU A 59 ? SER A 51 LEU A 56 1 ? 6 HELX_P HELX_P6 6 SER A 61 ? ASN A 81 ? SER A 58 ASN A 78 1 ? 21 HELX_P HELX_P7 7 ASP A 84 ? SER A 87 ? ASP A 81 SER A 84 5 ? 4 HELX_P HELX_P8 8 LEU A 88 ? GLY A 103 ? LEU A 85 GLY A 100 1 ? 16 HELX_P HELX_P9 9 SER A 107 ? GLY A 125 ? SER A 104 GLY A 122 1 ? 19 HELX_P HELX_P10 10 PRO A 126 ? PHE A 128 ? PRO A 123 PHE A 125 5 ? 3 HELX_P HELX_P11 11 THR A 129 ? ARG A 149 ? THR A 126 ARG A 146 1 ? 21 HELX_P HELX_P12 12 GLY A 150 ? ASP A 152 ? GLY A 147 ASP A 149 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A HIS 99 NE2 A ? ? 1_555 B HEM . FE A ? A HIS 96 A HEM 201 1_555 ? ? ? ? ? ? ? 2.305 ? metalc2 metalc ? ? A HIS 67 NE2 A ? ? 1_555 B HEM . FE A ? A HIS 64 A HEM 201 1_555 ? ? ? ? ? ? ? 2.344 ? metalc3 metalc ? ? A HIS 67 NE2 B ? ? 1_555 B HEM . FE B ? A HIS 64 A HEM 201 1_555 ? ? ? ? ? ? ? 2.523 ? metalc4 metalc ? ? A HIS 99 NE2 B ? ? 1_555 B HEM . FE B ? A HIS 96 A HEM 201 1_555 ? ? ? ? ? ? ? 2.586 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE HEM A 201' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 LEU A 44 ? LEU A 41 . ? 1_555 ? 2 AC1 16 PHE A 45 ? PHE A 42 . ? 1_555 ? 3 AC1 16 TYR A 47 ? TYR A 44 . ? 1_555 ? 4 AC1 16 HIS A 67 ? HIS A 64 . ? 1_555 ? 5 AC1 16 LYS A 70 ? LYS A 67 . ? 1_555 ? 6 AC1 16 LYS A 70 ? LYS A 67 . ? 12_767 ? 7 AC1 16 VAL A 71 ? VAL A 68 . ? 1_555 ? 8 AC1 16 VAL A 74 ? VAL A 71 . ? 1_555 ? 9 AC1 16 LEU A 95 ? LEU A 92 . ? 1_555 ? 10 AC1 16 HIS A 99 ? HIS A 96 . ? 1_555 ? 11 AC1 16 VAL A 104 ? VAL A 101 . ? 1_555 ? 12 AC1 16 PHE A 109 ? PHE A 106 . ? 1_555 ? 13 AC1 16 VAL A 112 ? VAL A 109 . ? 1_555 ? 14 AC1 16 HOH D . ? HOH A 307 . ? 1_555 ? 15 AC1 16 HOH D . ? HOH A 317 . ? 12_767 ? 16 AC1 16 HOH D . ? HOH A 317 . ? 1_555 ? 17 AC2 6 SER A 22 ? SER A 19 . ? 1_555 ? 18 AC2 6 PRO A 23 ? PRO A 20 . ? 1_555 ? 19 AC2 6 LEU A 24 ? LEU A 21 . ? 1_555 ? 20 AC2 6 GLU A 25 ? GLU A 22 . ? 1_555 ? 21 AC2 6 ARG A 69 ? ARG A 66 . ? 1_555 ? 22 AC2 6 HOH D . ? HOH A 339 . ? 1_555 ? # _database_PDB_matrix.entry_id 4MU5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4MU5 _atom_sites.fract_transf_matrix[1][1] 0.011411 _atom_sites.fract_transf_matrix[1][2] 0.006588 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013176 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008679 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 ? ? ? A . n A 1 2 SER 2 -1 ? ? ? A . n A 1 3 HIS 3 0 ? ? ? A . n A 1 4 MET 4 1 ? ? ? A . n A 1 5 GLU 5 2 ? ? ? A . n A 1 6 ARG 6 3 3 ARG ARG A . n A 1 7 PRO 7 4 4 PRO PRO A . n A 1 8 GLU 8 5 5 GLU GLU A . n A 1 9 SER 9 6 6 SER SER A . n A 1 10 GLU 10 7 7 GLU GLU A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 GLN 14 11 11 GLN GLN A . n A 1 15 SER 15 12 12 SER SER A . n A 1 16 TRP 16 13 13 TRP TRP A . n A 1 17 ARG 17 14 14 ARG ARG A . n A 1 18 VAL 18 15 15 VAL VAL A . n A 1 19 VAL 19 16 16 VAL VAL A . n A 1 20 SER 20 17 17 SER SER A . n A 1 21 ARG 21 18 18 ARG ARG A . n A 1 22 SER 22 19 19 SER SER A . n A 1 23 PRO 23 20 20 PRO PRO A . n A 1 24 LEU 24 21 21 LEU LEU A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 HIS 26 23 23 HIS HIS A . n A 1 27 GLY 27 24 24 GLY GLY A . n A 1 28 THR 28 25 25 THR THR A . n A 1 29 VAL 29 26 26 VAL VAL A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 PHE 31 28 28 PHE PHE A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 ARG 33 30 30 ARG ARG A . n A 1 34 LEU 34 31 31 LEU LEU A . n A 1 35 PHE 35 32 32 PHE PHE A . n A 1 36 ALA 36 33 33 ALA ALA A . n A 1 37 LEU 37 34 34 LEU LEU A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 PRO 39 36 36 PRO PRO A . n A 1 40 SER 40 37 37 SER SER A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 PRO 43 40 40 PRO PRO A . n A 1 44 LEU 44 41 41 LEU LEU A . n A 1 45 PHE 45 42 42 PHE PHE A . n A 1 46 GLN 46 43 43 GLN GLN A . n A 1 47 TYR 47 44 44 TYR TYR A . n A 1 48 ASN 48 45 45 ASN ASN A . n A 1 49 GLY 49 46 46 GLY GLY A . n A 1 50 ARG 50 47 47 ARG ARG A . n A 1 51 GLN 51 48 48 GLN GLN A . n A 1 52 PHE 52 49 49 PHE PHE A . n A 1 53 SER 53 50 50 SER SER A . n A 1 54 SER 54 51 51 SER SER A . n A 1 55 PRO 55 52 52 PRO PRO A . n A 1 56 GLU 56 53 53 GLU GLU A . n A 1 57 ASP 57 54 54 ASP ASP A . n A 1 58 SER 58 55 55 SER SER A . n A 1 59 LEU 59 56 56 LEU LEU A . n A 1 60 SER 60 57 57 SER SER A . n A 1 61 SER 61 58 58 SER SER A . n A 1 62 PRO 62 59 59 PRO PRO A . n A 1 63 GLU 63 60 60 GLU GLU A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 HIS 67 64 64 HIS HIS A . n A 1 68 ILE 68 65 65 ILE ILE A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 LYS 70 67 67 LYS LYS A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 MET 72 69 69 MET MET A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 ILE 75 72 72 ILE ILE A . n A 1 76 ASP 76 73 73 ASP ASP A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 ALA 78 75 75 ALA ALA A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 THR 80 77 77 THR THR A . n A 1 81 ASN 81 78 78 ASN ASN A . n A 1 82 VAL 82 79 79 VAL VAL A . n A 1 83 GLU 83 80 80 GLU GLU A . n A 1 84 ASP 84 81 81 ASP ASP A . n A 1 85 LEU 85 82 82 LEU LEU A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 SER 87 84 84 SER SER A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 GLU 89 86 86 GLU GLU A . n A 1 90 GLU 90 87 87 GLU GLU A . n A 1 91 TYR 91 88 88 TYR TYR A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 THR 93 90 90 THR THR A . n A 1 94 SER 94 91 91 SER SER A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 GLY 96 93 93 GLY GLY A . n A 1 97 ARG 97 94 94 ARG ARG A . n A 1 98 LYS 98 95 95 LYS LYS A . n A 1 99 HIS 99 96 96 HIS HIS A . n A 1 100 ARG 100 97 97 ARG ARG A . n A 1 101 ALA 101 98 98 ALA ALA A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 GLY 103 100 100 GLY GLY A . n A 1 104 VAL 104 101 101 VAL VAL A . n A 1 105 ARG 105 102 102 ARG ARG A . n A 1 106 LEU 106 103 103 LEU LEU A . n A 1 107 SER 107 104 104 SER SER A . n A 1 108 SER 108 105 105 SER SER A . n A 1 109 PHE 109 106 106 PHE PHE A . n A 1 110 SER 110 107 107 SER SER A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 VAL 112 109 109 VAL VAL A . n A 1 113 GLY 113 110 110 GLY GLY A . n A 1 114 GLU 114 111 111 GLU GLU A . n A 1 115 SER 115 112 112 SER SER A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 LEU 117 114 114 LEU LEU A . n A 1 118 TYR 118 115 115 TYR TYR A . n A 1 119 MET 119 116 116 MET MET A . n A 1 120 LEU 120 117 117 LEU LEU A . n A 1 121 GLU 121 118 118 GLU GLU A . n A 1 122 LYS 122 119 119 LYS LYS A . n A 1 123 SER 123 120 120 SER SER A . n A 1 124 LEU 124 121 121 LEU LEU A . n A 1 125 GLY 125 122 122 GLY GLY A . n A 1 126 PRO 126 123 123 PRO PRO A . n A 1 127 ASP 127 124 124 ASP ASP A . n A 1 128 PHE 128 125 125 PHE PHE A . n A 1 129 THR 129 126 126 THR THR A . n A 1 130 PRO 130 127 127 PRO PRO A . n A 1 131 ALA 131 128 128 ALA ALA A . n A 1 132 THR 132 129 129 THR THR A . n A 1 133 ARG 133 130 130 ARG ARG A . n A 1 134 THR 134 131 131 THR THR A . n A 1 135 ALA 135 132 132 ALA ALA A . n A 1 136 TRP 136 133 133 TRP TRP A . n A 1 137 SER 137 134 134 SER SER A . n A 1 138 ARG 138 135 135 ARG ARG A . n A 1 139 LEU 139 136 136 LEU LEU A . n A 1 140 TYR 140 137 137 TYR TYR A . n A 1 141 GLY 141 138 138 GLY GLY A . n A 1 142 ALA 142 139 139 ALA ALA A . n A 1 143 VAL 143 140 140 VAL VAL A . n A 1 144 VAL 144 141 141 VAL VAL A . n A 1 145 GLN 145 142 142 GLN GLN A . n A 1 146 ALA 146 143 143 ALA ALA A . n A 1 147 TRP 147 144 144 TRP TRP A . n A 1 148 SER 148 145 145 SER SER A . n A 1 149 ARG 149 146 146 ARG ARG A . n A 1 150 GLY 150 147 147 GLY GLY A . n A 1 151 TRP 151 148 148 TRP TRP A . n A 1 152 ASP 152 149 149 ASP ASP A . n A 1 153 GLY 153 150 150 GLY GLY A . n A 1 154 GLU 154 151 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 325 ? D HOH . 2 1 A HOH 330 ? D HOH . 3 1 A HOH 332 ? D HOH . 4 1 A HOH 347 ? D HOH . 5 1 A HOH 364 ? D HOH . 6 1 A HOH 370 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 A A HIS 99 ? A HIS 96 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NA A B HEM . ? A HEM 201 ? 1_555 82.4 ? 2 NE2 A A HIS 99 ? A HIS 96 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NB A B HEM . ? A HEM 201 ? 1_555 81.2 ? 3 NA A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NB A B HEM . ? A HEM 201 ? 1_555 86.4 ? 4 NE2 A A HIS 99 ? A HIS 96 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NC A B HEM . ? A HEM 201 ? 1_555 78.0 ? 5 NA A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NC A B HEM . ? A HEM 201 ? 1_555 160.4 ? 6 NB A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NC A B HEM . ? A HEM 201 ? 1_555 91.4 ? 7 NE2 A A HIS 99 ? A HIS 96 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 ND A B HEM . ? A HEM 201 ? 1_555 90.4 ? 8 NA A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 ND A B HEM . ? A HEM 201 ? 1_555 86.9 ? 9 NB A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 ND A B HEM . ? A HEM 201 ? 1_555 169.9 ? 10 NC A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 ND A B HEM . ? A HEM 201 ? 1_555 92.4 ? 11 NE2 A A HIS 99 ? A HIS 96 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NE2 A A HIS 67 ? A HIS 64 ? 1_555 167.3 ? 12 NA A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NE2 A A HIS 67 ? A HIS 64 ? 1_555 104.2 ? 13 NB A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NE2 A A HIS 67 ? A HIS 64 ? 1_555 88.4 ? 14 NC A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NE2 A A HIS 67 ? A HIS 64 ? 1_555 95.2 ? 15 ND A B HEM . ? A HEM 201 ? 1_555 FE A B HEM . ? A HEM 201 ? 1_555 NE2 A A HIS 67 ? A HIS 64 ? 1_555 100.6 ? 16 NE2 B A HIS 67 ? A HIS 64 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NA B B HEM . ? A HEM 201 ? 1_555 73.9 ? 17 NE2 B A HIS 67 ? A HIS 64 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NB B B HEM . ? A HEM 201 ? 1_555 95.3 ? 18 NA B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NB B B HEM . ? A HEM 201 ? 1_555 86.6 ? 19 NE2 B A HIS 67 ? A HIS 64 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NC B B HEM . ? A HEM 201 ? 1_555 90.2 ? 20 NA B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NC B B HEM . ? A HEM 201 ? 1_555 164.0 ? 21 NB B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NC B B HEM . ? A HEM 201 ? 1_555 93.7 ? 22 NE2 B A HIS 67 ? A HIS 64 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 ND B B HEM . ? A HEM 201 ? 1_555 68.8 ? 23 NA B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 ND B B HEM . ? A HEM 201 ? 1_555 84.7 ? 24 NB B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 ND B B HEM . ? A HEM 201 ? 1_555 163.5 ? 25 NC B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 ND B B HEM . ? A HEM 201 ? 1_555 90.8 ? 26 NE2 B A HIS 67 ? A HIS 64 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NE2 B A HIS 99 ? A HIS 96 ? 1_555 157.2 ? 27 NA B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NE2 B A HIS 99 ? A HIS 96 ? 1_555 83.3 ? 28 NB B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NE2 B A HIS 99 ? A HIS 96 ? 1_555 83.7 ? 29 NC B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NE2 B A HIS 99 ? A HIS 96 ? 1_555 112.6 ? 30 ND B B HEM . ? A HEM 201 ? 1_555 FE B B HEM . ? A HEM 201 ? 1_555 NE2 B A HIS 99 ? A HIS 96 ? 1_555 109.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-18 2 'Structure model' 1 1 2014-09-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 92 ? ? ND1 A HIS 96 ? B 2.07 2 1 O A HOH 322 ? ? O A HOH 382 ? ? 2.14 3 1 OG A SER 84 ? ? O A HOH 338 ? ? 2.16 4 1 OE1 A GLU 22 ? A O A HOH 357 ? ? 2.16 5 1 O A GLN 11 ? ? O A HOH 345 ? ? 2.17 6 1 OE1 A GLU 22 ? B O A HOH 357 ? ? 2.18 7 1 OG A SER 91 ? A O A HOH 359 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 388 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 388 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 12_767 _pdbx_validate_symm_contact.dist 2.07 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 N _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 144 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CA _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 144 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.309 _pdbx_validate_rmsd_bond.bond_target_value 1.459 _pdbx_validate_rmsd_bond.bond_deviation -0.150 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.020 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A LEU 82 ? B C A LEU 82 ? B N A SER 83 ? ? 110.66 122.70 -12.04 1.60 Y 2 1 C A LEU 82 ? B N A SER 83 ? ? CA A SER 83 ? ? 139.38 121.70 17.68 2.50 Y 3 1 N A TRP 144 ? ? CA A TRP 144 ? B C A TRP 144 ? ? 129.03 111.00 18.03 2.70 N 4 1 CA A TRP 144 ? A C A TRP 144 ? ? O A TRP 144 ? ? 134.82 120.10 14.72 2.10 N 5 1 CA A TRP 144 ? B C A TRP 144 ? ? O A TRP 144 ? ? 136.10 120.10 16.00 2.10 N 6 1 CA A TRP 144 ? A C A TRP 144 ? ? N A SER 145 ? ? 101.99 117.20 -15.21 2.20 Y 7 1 CA A TRP 144 ? B C A TRP 144 ? ? N A SER 145 ? ? 100.88 117.20 -16.32 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 80 ? ? 87.80 -7.09 2 1 GLU A 80 ? ? 87.80 -10.98 3 1 SER A 83 ? ? -28.95 -52.64 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -2 ? A GLY 1 2 1 Y 1 A SER -1 ? A SER 2 3 1 Y 1 A HIS 0 ? A HIS 3 4 1 Y 1 A MET 1 ? A MET 4 5 1 Y 1 A GLU 2 ? A GLU 5 6 1 Y 1 A GLU 151 ? A GLU 154 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 201 200 HEM HEM A . C 3 SO4 1 202 1 SO4 SO4 A . D 4 HOH 1 301 1 HOH HOH A . D 4 HOH 2 302 2 HOH HOH A . D 4 HOH 3 303 3 HOH HOH A . D 4 HOH 4 304 4 HOH HOH A . D 4 HOH 5 305 5 HOH HOH A . D 4 HOH 6 306 6 HOH HOH A . D 4 HOH 7 307 7 HOH HOH A . D 4 HOH 8 308 8 HOH HOH A . D 4 HOH 9 309 9 HOH HOH A . D 4 HOH 10 310 10 HOH HOH A . D 4 HOH 11 311 11 HOH HOH A . D 4 HOH 12 312 12 HOH HOH A . D 4 HOH 13 313 13 HOH HOH A . D 4 HOH 14 314 14 HOH HOH A . D 4 HOH 15 315 15 HOH HOH A . D 4 HOH 16 316 16 HOH HOH A . D 4 HOH 17 317 17 HOH HOH A . D 4 HOH 18 318 18 HOH HOH A . D 4 HOH 19 319 19 HOH HOH A . D 4 HOH 20 320 20 HOH HOH A . D 4 HOH 21 321 21 HOH HOH A . D 4 HOH 22 322 22 HOH HOH A . D 4 HOH 23 323 23 HOH HOH A . D 4 HOH 24 324 24 HOH HOH A . D 4 HOH 25 325 25 HOH HOH A . D 4 HOH 26 326 26 HOH HOH A . D 4 HOH 27 327 27 HOH HOH A . D 4 HOH 28 328 28 HOH HOH A . D 4 HOH 29 329 29 HOH HOH A . D 4 HOH 30 330 30 HOH HOH A . D 4 HOH 31 331 31 HOH HOH A . D 4 HOH 32 332 32 HOH HOH A . D 4 HOH 33 333 33 HOH HOH A . D 4 HOH 34 334 34 HOH HOH A . D 4 HOH 35 335 35 HOH HOH A . D 4 HOH 36 336 36 HOH HOH A . D 4 HOH 37 337 37 HOH HOH A . D 4 HOH 38 338 38 HOH HOH A . D 4 HOH 39 339 39 HOH HOH A . D 4 HOH 40 340 40 HOH HOH A . D 4 HOH 41 341 41 HOH HOH A . D 4 HOH 42 342 42 HOH HOH A . D 4 HOH 43 343 43 HOH HOH A . D 4 HOH 44 344 44 HOH HOH A . D 4 HOH 45 345 45 HOH HOH A . D 4 HOH 46 346 46 HOH HOH A . D 4 HOH 47 347 47 HOH HOH A . D 4 HOH 48 348 48 HOH HOH A . D 4 HOH 49 349 49 HOH HOH A . D 4 HOH 50 350 50 HOH HOH A . D 4 HOH 51 351 51 HOH HOH A . D 4 HOH 52 352 52 HOH HOH A . D 4 HOH 53 353 53 HOH HOH A . D 4 HOH 54 354 54 HOH HOH A . D 4 HOH 55 355 55 HOH HOH A . D 4 HOH 56 356 56 HOH HOH A . D 4 HOH 57 357 57 HOH HOH A . D 4 HOH 58 358 58 HOH HOH A . D 4 HOH 59 359 59 HOH HOH A . D 4 HOH 60 360 60 HOH HOH A . D 4 HOH 61 361 61 HOH HOH A . D 4 HOH 62 362 62 HOH HOH A . D 4 HOH 63 363 63 HOH HOH A . D 4 HOH 64 364 64 HOH HOH A . D 4 HOH 65 365 65 HOH HOH A . D 4 HOH 66 366 66 HOH HOH A . D 4 HOH 67 367 67 HOH HOH A . D 4 HOH 68 368 68 HOH HOH A . D 4 HOH 69 369 70 HOH HOH A . D 4 HOH 70 370 71 HOH HOH A . D 4 HOH 71 371 72 HOH HOH A . D 4 HOH 72 372 73 HOH HOH A . D 4 HOH 73 373 74 HOH HOH A . D 4 HOH 74 374 75 HOH HOH A . D 4 HOH 75 375 76 HOH HOH A . D 4 HOH 76 376 77 HOH HOH A . D 4 HOH 77 377 78 HOH HOH A . D 4 HOH 78 378 79 HOH HOH A . D 4 HOH 79 379 80 HOH HOH A . D 4 HOH 80 380 81 HOH HOH A . D 4 HOH 81 381 82 HOH HOH A . D 4 HOH 82 382 83 HOH HOH A . D 4 HOH 83 383 84 HOH HOH A . D 4 HOH 84 384 85 HOH HOH A . D 4 HOH 85 385 86 HOH HOH A . D 4 HOH 86 386 87 HOH HOH A . D 4 HOH 87 387 88 HOH HOH A . D 4 HOH 88 388 89 HOH HOH A . D 4 HOH 89 389 90 HOH HOH A . D 4 HOH 90 390 91 HOH HOH A . D 4 HOH 91 391 92 HOH HOH A . D 4 HOH 92 392 93 HOH HOH A . D 4 HOH 93 393 94 HOH HOH A . #