HEADER LIGASE 23-SEP-13 4MV4 TITLE CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM HAEMOPHILUS INFLUENZAE IN TITLE 2 COMPLEX WITH AMPPCP AND MG2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A, ACC; COMPND 5 EC: 6.3.4.14, 6.4.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 5 GENE: ACCC, HI_0972; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP-GRASP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,T.S.CHAMPION,R.J.BONNOT, AUTHOR 2 G.L.WALDROP REVDAT 4 20-SEP-23 4MV4 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4MV4 1 REMARK REVDAT 2 01-JUL-15 4MV4 1 JRNL REVDAT 1 14-JAN-15 4MV4 0 JRNL AUTH T.C.BROUSSARD,S.PAKHOMOVA,D.B.NEAU,R.BONNOT,G.L.WALDROP JRNL TITL STRUCTURAL ANALYSIS OF SUBSTRATE, REACTION INTERMEDIATE, AND JRNL TITL 2 PRODUCT BINDING IN HAEMOPHILUS INFLUENZAE BIOTIN JRNL TITL 3 CARBOXYLASE. JRNL REF BIOCHEMISTRY V. 54 3860 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26020841 JRNL DOI 10.1021/ACS.BIOCHEM.5B00340 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 54662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6000 - 4.2940 0.94 2663 137 0.1351 0.1489 REMARK 3 2 4.2940 - 3.4088 0.95 2658 138 0.1357 0.1626 REMARK 3 3 3.4088 - 2.9780 0.99 2772 152 0.1624 0.1851 REMARK 3 4 2.9780 - 2.7058 0.98 2732 141 0.1615 0.1747 REMARK 3 5 2.7058 - 2.5119 0.98 2715 141 0.1478 0.1956 REMARK 3 6 2.5119 - 2.3638 0.99 2754 148 0.1503 0.1935 REMARK 3 7 2.3638 - 2.2454 0.99 2744 137 0.1440 0.1879 REMARK 3 8 2.2454 - 2.1477 0.99 2746 147 0.1506 0.1875 REMARK 3 9 2.1477 - 2.0650 0.98 2755 132 0.1563 0.1927 REMARK 3 10 2.0650 - 1.9937 0.99 2756 141 0.1639 0.1903 REMARK 3 11 1.9937 - 1.9314 0.99 2748 142 0.1665 0.2194 REMARK 3 12 1.9314 - 1.8762 0.99 2769 139 0.1743 0.2064 REMARK 3 13 1.8762 - 1.8268 0.99 2743 137 0.1677 0.2218 REMARK 3 14 1.8268 - 1.7822 0.98 2717 149 0.1737 0.2065 REMARK 3 15 1.7822 - 1.7417 0.99 2722 148 0.1781 0.2157 REMARK 3 16 1.7417 - 1.7046 0.99 2738 139 0.1952 0.2775 REMARK 3 17 1.7046 - 1.6705 0.99 2753 150 0.2054 0.2299 REMARK 3 18 1.6705 - 1.6390 0.99 2719 163 0.2138 0.2609 REMARK 3 19 1.6390 - 1.6100 0.99 2737 140 0.2328 0.2551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3538 REMARK 3 ANGLE : 1.414 4791 REMARK 3 CHIRALITY : 0.082 533 REMARK 3 PLANARITY : 0.008 624 REMARK 3 DIHEDRAL : 14.799 1342 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7290 90.7539 -8.3179 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1965 REMARK 3 T33: 0.2534 T12: -0.0285 REMARK 3 T13: -0.0482 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 2.5401 L22: 1.7491 REMARK 3 L33: 1.3681 L12: 0.7691 REMARK 3 L13: 0.2397 L23: -0.4196 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: -0.2337 S13: -0.3271 REMARK 3 S21: -0.0011 S22: 0.0984 S23: 0.3355 REMARK 3 S31: 0.0733 S32: -0.1507 S33: -0.1150 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8934 67.3528 -22.0475 REMARK 3 T TENSOR REMARK 3 T11: 0.3806 T22: 0.3191 REMARK 3 T33: 0.4542 T12: 0.0328 REMARK 3 T13: -0.1200 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 1.9284 L22: 1.6500 REMARK 3 L33: 0.9772 L12: 0.3942 REMARK 3 L13: 0.3629 L23: -0.4563 REMARK 3 S TENSOR REMARK 3 S11: 0.2244 S12: -0.3644 S13: -0.5437 REMARK 3 S21: -0.4961 S22: -0.1685 S23: 0.1723 REMARK 3 S31: 0.4087 S32: -0.1925 S33: 0.1848 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7025 92.5812 -24.7874 REMARK 3 T TENSOR REMARK 3 T11: 0.2722 T22: 0.1861 REMARK 3 T33: 0.1484 T12: 0.0143 REMARK 3 T13: -0.0422 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.5602 L22: 1.1750 REMARK 3 L33: 0.9663 L12: -0.0775 REMARK 3 L13: 0.0620 L23: 0.0770 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: 0.4167 S13: -0.3432 REMARK 3 S21: -0.3867 S22: -0.0245 S23: 0.0248 REMARK 3 S31: 0.1263 S32: 0.0556 S33: -0.0850 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6269 99.6362 -6.0696 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1510 REMARK 3 T33: 0.1727 T12: -0.0071 REMARK 3 T13: -0.0284 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.8775 L22: 1.9207 REMARK 3 L33: 1.4784 L12: 0.0879 REMARK 3 L13: 0.2134 L23: -0.1397 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: -0.1559 S13: -0.0447 REMARK 3 S21: 0.0740 S22: -0.0433 S23: -0.3279 REMARK 3 S31: -0.0453 S32: 0.1046 S33: -0.0038 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED TO THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000082403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED DOUBLE REMARK 200 CRYSTAL SI (111) REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54685 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DV1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.73900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.47800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.73900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.47800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -42.67200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 221.73022 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 651 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 877 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 887 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 165 REMARK 465 GLY A 166 REMARK 465 ARG A 167 REMARK 465 MET A 446 REMARK 465 ASN A 447 REMARK 465 GLU A 448 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 193 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 314 O HOH A 756 1.59 REMARK 500 HH21 ARG A 314 O HOH A 756 1.60 REMARK 500 O HOH A 715 O HOH A 756 2.10 REMARK 500 NH2 ARG A 314 O HOH A 756 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 345 O HOH A 813 2775 2.05 REMARK 500 O HOH A 771 O HOH A 803 4685 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 302 CG - SD - CE ANGL. DEV. = -19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -168.00 -166.77 REMARK 500 SER A 59 -81.99 -132.74 REMARK 500 PHE A 84 -119.92 41.99 REMARK 500 SER A 139 -166.17 -72.58 REMARK 500 ASP A 141 101.48 -54.94 REMARK 500 ASN A 194 20.35 49.90 REMARK 500 ALA A 226 -151.04 48.44 REMARK 500 ASN A 281 49.50 38.10 REMARK 500 TYR A 381 -159.93 -126.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 OE2 REMARK 620 2 GLU A 288 OE1 115.3 REMARK 620 3 ACP A 501 O1B 145.2 59.7 REMARK 620 4 ACP A 501 O2G 127.5 107.2 48.0 REMARK 620 5 HOH A 901 O 68.6 145.5 96.7 59.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV1 RELATED DB: PDB REMARK 900 BIOTIN CARBOXYLASE REMARK 900 RELATED ID: 2VR1 RELATED DB: PDB REMARK 900 BIOTIN CARBOXYLASE WITH ADPCF2P REMARK 900 RELATED ID: 4MV1 RELATED DB: PDB REMARK 900 RELATED ID: 4MV3 RELATED DB: PDB REMARK 900 RELATED ID: 4MV6 RELATED DB: PDB REMARK 900 RELATED ID: 4MV7 RELATED DB: PDB REMARK 900 RELATED ID: 4MV8 RELATED DB: PDB REMARK 900 RELATED ID: 4MV9 RELATED DB: PDB DBREF 4MV4 A 1 448 UNP P43873 ACCC_HAEIN 1 448 SEQADV 4MV4 MET A -19 UNP P43873 EXPRESSION TAG SEQADV 4MV4 GLY A -18 UNP P43873 EXPRESSION TAG SEQADV 4MV4 SER A -17 UNP P43873 EXPRESSION TAG SEQADV 4MV4 SER A -16 UNP P43873 EXPRESSION TAG SEQADV 4MV4 HIS A -15 UNP P43873 EXPRESSION TAG SEQADV 4MV4 HIS A -14 UNP P43873 EXPRESSION TAG SEQADV 4MV4 HIS A -13 UNP P43873 EXPRESSION TAG SEQADV 4MV4 HIS A -12 UNP P43873 EXPRESSION TAG SEQADV 4MV4 HIS A -11 UNP P43873 EXPRESSION TAG SEQADV 4MV4 HIS A -10 UNP P43873 EXPRESSION TAG SEQADV 4MV4 SER A -9 UNP P43873 EXPRESSION TAG SEQADV 4MV4 SER A -8 UNP P43873 EXPRESSION TAG SEQADV 4MV4 GLY A -7 UNP P43873 EXPRESSION TAG SEQADV 4MV4 LEU A -6 UNP P43873 EXPRESSION TAG SEQADV 4MV4 VAL A -5 UNP P43873 EXPRESSION TAG SEQADV 4MV4 PRO A -4 UNP P43873 EXPRESSION TAG SEQADV 4MV4 ARG A -3 UNP P43873 EXPRESSION TAG SEQADV 4MV4 GLY A -2 UNP P43873 EXPRESSION TAG SEQADV 4MV4 SER A -1 UNP P43873 EXPRESSION TAG SEQADV 4MV4 HIS A 0 UNP P43873 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET LEU GLU LYS VAL VAL SEQRES 3 A 468 ILE ALA ASN ARG GLY GLU ILE ALA LEU ARG ILE LEU ARG SEQRES 4 A 468 ALA CYS LYS GLU LEU GLY ILE LYS THR VAL ALA VAL HIS SEQRES 5 A 468 SER THR ALA ASP ARG ASP LEU LYS HIS VAL LEU LEU ALA SEQRES 6 A 468 ASP GLU THR ILE CYS ILE GLY PRO ALA PRO SER ALA LYS SEQRES 7 A 468 SER TYR LEU ASN ILE PRO ALA ILE ILE ALA ALA ALA GLU SEQRES 8 A 468 VAL THR GLY ALA ASP ALA ILE HIS PRO GLY TYR GLY PHE SEQRES 9 A 468 LEU SER GLU ASN ALA ASP PHE ALA GLU GLN VAL GLU ARG SEQRES 10 A 468 SER GLY PHE THR PHE ILE GLY PRO THR ALA ASP VAL ILE SEQRES 11 A 468 ARG LEU MET GLY ASP LYS VAL SER ALA ILE LYS ALA MET SEQRES 12 A 468 LYS LYS ALA GLY VAL PRO CYS VAL PRO GLY SER ASP GLY SEQRES 13 A 468 PRO VAL SER ASN ASP ILE ALA LYS ASN LYS GLU ILE ALA SEQRES 14 A 468 LYS ARG ILE GLY TYR PRO ILE ILE ILE LYS ALA SER GLY SEQRES 15 A 468 GLY GLY GLY GLY ARG GLY MET ARG VAL VAL ARG SER GLU SEQRES 16 A 468 ASP ALA LEU GLU GLU SER ILE ALA MET THR LYS ALA GLU SEQRES 17 A 468 ALA LYS ALA ALA PHE ASN ASN ASP MET VAL TYR MET GLU SEQRES 18 A 468 LYS TYR LEU GLU ASN PRO ARG HIS VAL GLU ILE GLN VAL SEQRES 19 A 468 LEU ALA ASP THR HIS GLY ASN ALA VAL TYR LEU ALA GLU SEQRES 20 A 468 ARG ASP CYS SER MET GLN ARG ARG HIS GLN LYS VAL VAL SEQRES 21 A 468 GLU GLU ALA PRO ALA PRO GLY ILE THR GLU GLU VAL ARG SEQRES 22 A 468 ARG ASP ILE GLY SER ARG CYS ALA ASN ALA CYS VAL GLU SEQRES 23 A 468 ILE GLY TYR ARG GLY ALA GLY THR PHE GLU PHE LEU TYR SEQRES 24 A 468 GLU ASN GLY GLU PHE TYR PHE ILE GLU MET ASN THR ARG SEQRES 25 A 468 ILE GLN VAL GLU HIS PRO VAL THR GLU MET ILE THR GLY SEQRES 26 A 468 VAL ASP LEU VAL LYS GLU GLN LEU ARG ILE ALA ALA GLY SEQRES 27 A 468 LEU PRO ILE SER PHE LYS GLN GLU ASP ILE LYS VAL LYS SEQRES 28 A 468 GLY HIS ALA MET GLU CYS ARG ILE ASN ALA GLU ASP PRO SEQRES 29 A 468 LYS THR PHE LEU PRO SER PRO GLY LYS VAL ASN HIS LEU SEQRES 30 A 468 HIS SER PRO GLY GLY LEU GLY VAL ARG TRP ASP SER HIS SEQRES 31 A 468 VAL TYR GLY GLY TYR THR VAL PRO PRO HIS TYR ASP SER SEQRES 32 A 468 MET ILE ALA LYS LEU ILE THR TYR GLY ASP THR ARG GLU SEQRES 33 A 468 VAL ALA ILE ARG ARG MET GLN ASN ALA LEU SER GLU THR SEQRES 34 A 468 ILE ILE ASP GLY ILE LYS THR ASN ILE PRO LEU HIS GLU SEQRES 35 A 468 LEU ILE LEU GLU ASP GLU ASN PHE GLN LYS GLY GLY THR SEQRES 36 A 468 ASN ILE HIS TYR LEU GLU LYS LYS LEU GLY MET ASN GLU HET ACP A 501 48 HET EDO A 502 10 HET EDO A 503 10 HET CL A 504 1 HET MG A 505 1 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 CL CL 1- FORMUL 6 MG MG 2+ FORMUL 7 HOH *302(H2 O) HELIX 1 1 ARG A 10 GLY A 25 1 16 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 SER A 98 1 11 HELIX 7 7 THR A 106 ASP A 115 1 10 HELIX 8 8 ASP A 115 GLY A 127 1 13 HELIX 9 9 ASP A 141 GLY A 153 1 13 HELIX 10 10 SER A 174 PHE A 193 1 20 HELIX 11 11 THR A 249 GLY A 268 1 20 HELIX 12 12 GLU A 296 GLY A 305 1 10 HELIX 13 13 ASP A 307 ALA A 317 1 11 HELIX 14 14 LYS A 324 ILE A 328 5 5 HELIX 15 15 THR A 394 THR A 409 1 16 HELIX 16 16 ASN A 417 GLU A 426 1 10 HELIX 17 17 ASP A 427 GLY A 433 1 7 HELIX 18 18 HIS A 438 GLY A 445 1 8 SHEET 1 A 5 GLU A 47 GLY A 52 0 SHEET 2 A 5 LYS A 27 SER A 33 1 N ALA A 30 O GLU A 47 SHEET 3 A 5 LYS A 4 ILE A 7 1 N VAL A 5 O LYS A 27 SHEET 4 A 5 ALA A 77 HIS A 79 1 O HIS A 79 N VAL A 6 SHEET 5 A 5 THR A 101 PHE A 102 1 O THR A 101 N ILE A 78 SHEET 1 B 3 MET A 169 VAL A 172 0 SHEET 2 B 3 ILE A 156 ALA A 160 -1 N ILE A 158 O ARG A 170 SHEET 3 B 3 VAL A 198 LYS A 202 -1 O GLU A 201 N ILE A 157 SHEET 1 C 8 GLU A 283 ASN A 290 0 SHEET 2 C 8 GLY A 271 GLU A 280 -1 N GLU A 276 O GLU A 288 SHEET 3 C 8 ARG A 208 ALA A 216 -1 N ALA A 216 O GLY A 271 SHEET 4 C 8 ALA A 222 ARG A 234 -1 O LEU A 225 N GLN A 213 SHEET 5 C 8 GLN A 237 ALA A 243 -1 O GLN A 237 N ARG A 234 SHEET 6 C 8 HIS A 333 ASN A 340 -1 O ALA A 334 N ALA A 243 SHEET 7 C 8 MET A 384 GLY A 392 -1 O ILE A 385 N ILE A 339 SHEET 8 C 8 VAL A 365 ASP A 368 -1 N ARG A 366 O ILE A 389 SHEET 1 D 2 GLY A 352 LYS A 353 0 SHEET 2 D 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 E 2 HIS A 356 HIS A 358 0 SHEET 2 E 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 LINK OE2 GLU A 276 MG MG A 505 1555 1555 2.35 LINK OE1 GLU A 288 MG MG A 505 1555 1555 2.56 LINK O1B ACP A 501 MG MG A 505 1555 1555 2.56 LINK O2G ACP A 501 MG MG A 505 1555 1555 2.64 LINK MG MG A 505 O HOH A 901 1555 1555 2.18 CISPEP 1 TYR A 154 PRO A 155 0 1.31 CISPEP 2 ALA A 243 PRO A 244 0 -9.97 SITE 1 AC1 13 LYS A 159 GLY A 164 MET A 169 GLU A 201 SITE 2 AC1 13 LYS A 202 TYR A 203 LEU A 204 HIS A 236 SITE 3 AC1 13 LEU A 278 GLU A 288 MG A 505 HOH A 708 SITE 4 AC1 13 HOH A 901 SITE 1 AC2 1 LEU A 2 SITE 1 AC3 3 SER A 359 PRO A 360 GLY A 361 SITE 1 AC4 5 ARG A 292 GLN A 294 VAL A 295 HOH A 745 SITE 2 AC4 5 HOH A 895 SITE 1 AC5 5 GLU A 276 GLU A 288 ASN A 290 ACP A 501 SITE 2 AC5 5 HOH A 901 CRYST1 85.344 85.344 104.217 90.00 90.00 120.00 P 64 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011717 0.006765 0.000000 0.00000 SCALE2 0.000000 0.013530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009595 0.00000