HEADER HYDROLASE 25-SEP-13 4MWK OBSLTE 18-MAY-16 4MWK 5HMV TITLE TRICLINIC HEWL CO-CRYSTALLISED WITH CISPLATIN, STUDIED AT A DATA TITLE 2 COLLECTION TEMPERATURE OF 150K CAVEAT 4MWK THE SOLUTE MOLECULES DMS A202, MEB A 224-227 AND NO3A 210 CAVEAT 2 4MWK ARE IN VERY APPROXIMATE POSITIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.M.TANLEY,J.R.HELLIWELL REVDAT 2 18-MAY-16 4MWK 1 OBSLTE REVDAT 1 03-SEP-14 4MWK 0 JRNL AUTH S.W.M.TANLEY,J.R.HELLIWELL JRNL TITL X-RAY CRYSTAL STRUCTURES OF CISPLATIN BINDING TO HISTIDINE JRNL TITL 2 IN A PROTEIN AT MULTIPLE TEMPERATURES REVEALS THEIR JRNL TITL 3 STRUCTURAL DYNAMICS JRNL REF STRUCT.DYN. 2014 JRNL REFN JRNL DOI DX.DOI.ORG/10.1063/1.4883975 REMARK 2 REMARK 2 RESOLUTION. 0.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 48959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.1830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.18000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.557 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1102 ; 0.039 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1056 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1464 ; 2.907 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2365 ; 1.212 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 6.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;37.638 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 169 ;10.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.338 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.486 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1268 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 283 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 520 ; 1.074 ; 0.572 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 519 ; 1.049 ; 0.568 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 650 ; 1.304 ; 0.868 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 651 ; 1.309 ; 0.871 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 582 ; 4.128 ; 0.879 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 583 ; 4.128 ; 0.880 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 815 ; 4.705 ; 1.241 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1461 ; 3.995 ; 6.893 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1462 ; 3.994 ; 6.898 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2150 ; 8.953 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 22 ;19.693 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2275 ;11.762 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-13. REMARK 100 THE RCSB ID CODE IS RCSB082455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 150 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRROR OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : APEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48959 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.980 REMARK 200 RESOLUTION RANGE LOW (A) : 29.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.7 REMARK 200 DATA REDUNDANCY IN SHELL : 0.60 REMARK 200 R MERGE FOR SHELL (I) : 0.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER-MR REMARK 200 STARTING MODEL: PDB ENTRY 2W1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MG HEWL CO-CRYSTALLISED WITH 2.6MG REMARK 280 CISPLATIN, WITH THE PLATINUM COMPOUNDS BEING IN A 3-FOLD MOLAR REMARK 280 EXCESS TO THE PROTEIN. 462.5 UL OF A 0.02M NAAC SOLUTION ALONG REMARK 280 WITH 462.5 UL OF A 0.5M NANO3 SOLUTION WAS USED WITH 75 UL DMSO REMARK 280 ADDED, BATCH, PH 4.7, EVAPORATION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C2 DMS A 202 N1 CPT A 222 1.36 REMARK 500 C1' MEB A 226 O HOH A 436 1.55 REMARK 500 C1 MEB A 225 C2 MEB A 227 1.62 REMARK 500 C1' MEB A 224 C1 MEB A 227 1.67 REMARK 500 C2 MEB A 225 C2 MEB A 227 1.76 REMARK 500 O HOH A 412 O HOH A 440 1.81 REMARK 500 C3 MEB A 225 C2 MEB A 227 1.96 REMARK 500 O3 NO3 A 210 O HOH A 422 1.96 REMARK 500 C1' MEB A 224 C1' MEB A 227 1.98 REMARK 500 OD2 ASP A 52 O2 NO3 A 210 1.98 REMARK 500 C3 MEB A 225 O HOH A 417 2.01 REMARK 500 C1' MEB A 224 C3 MEB A 227 2.07 REMARK 500 O3 NO3 A 212 O HOH A 439 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 81 C3 MEB A 226 1465 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 41.85 -96.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPT A 221 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 219 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 CPT A 219 CL2 102.7 REMARK 620 3 CPT A 219 CL1 166.7 90.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT A 229 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 1 N REMARK 620 2 HOH A 433 O 135.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 220 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DMS A 205 S REMARK 620 2 CPT A 220 CL2 106.2 REMARK 620 3 DMS A 205 O 30.0 126.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 222 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 CPT A 222 N1 118.3 REMARK 620 3 CPT A 222 N2 89.5 90.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT A 218 PT REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CPT A 223 N2 REMARK 620 2 HIS A 15 NE2 124.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 223 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 CPT A 223 N1 140.2 REMARK 620 3 CPT A 223 N2 163.1 56.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PT A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PT A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MEB A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MEB A 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MEB A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MEB A 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MEB A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PT A 229 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MWM RELATED DB: PDB REMARK 900 RELATED ID: 4MWN RELATED DB: PDB DBREF 4MWK A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET DMS A 201 4 HET DMS A 202 4 HET DMS A 203 4 HET DMS A 204 4 HET DMS A 205 4 HET DMS A 206 4 HET DMS A 207 4 HET DMS A 208 4 HET PT A 209 1 HET NO3 A 210 4 HET NO3 A 211 4 HET NO3 A 212 4 HET NO3 A 213 4 HET NO3 A 214 4 HET NO3 A 215 4 HET NO3 A 216 4 HET NO3 A 217 4 HET PT A 218 1 HET CPT A 219 3 HET CPT A 220 2 HET CPT A 221 1 HET CPT A 222 3 HET CPT A 223 3 HET MEB A 224 4 HET MEB A 225 4 HET MEB A 226 4 HET MEB A 227 4 HET MEB A 228 4 HET PT A 229 1 HETNAM DMS DIMETHYL SULFOXIDE HETNAM PT PLATINUM (II) ION HETNAM NO3 NITRATE ION HETNAM CPT CISPLATIN HETNAM MEB 2-METHYLPROP-1-ENE HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 2 DMS 8(C2 H6 O S) FORMUL 10 PT 3(PT 2+) FORMUL 11 NO3 8(N O3 1-) FORMUL 20 CPT 5(CL2 H6 N2 PT) FORMUL 25 MEB 5(C4 H8) FORMUL 31 HOH *142(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 ASP A 101 1 14 HELIX 6 6 GLY A 104 ALA A 107 5 4 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 ASP A 119 ILE A 124 5 6 SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 80 CYS A 64 1555 1555 2.04 SSBOND 2 CYS A 94 CYS A 76 1555 1555 2.04 SSBOND 3 CYS A 115 CYS A 30 1555 1555 2.05 SSBOND 4 CYS A 127 CYS A 6 1555 1555 2.08 LINK ND1 HIS A 15 PT PT A 209 1555 1555 1.81 LINK NE2 HIS A 15 PT1 CPT A 219 1555 1555 2.06 LINK N BLYS A 1 PT PT A 229 1555 1555 2.08 LINK S DMS A 205 PT1 CPT A 220 1555 1555 2.20 LINK N ALYS A 1 PT PT A 229 1555 1555 2.40 LINK NE2 HIS A 15 PT1 CPT A 222 1555 1555 2.41 LINK O DMS A 205 PT1 CPT A 220 1555 1555 2.47 LINK PT PT A 218 N2 CPT A 223 1555 1555 2.54 LINK NE2 HIS A 15 PT PT A 218 1555 1555 2.55 LINK NE2 HIS A 15 PT1 CPT A 223 1555 1555 2.59 LINK PT PT A 229 O HOH A 433 1555 1555 2.72 SITE 1 AC1 8 ARG A 21 ASP A 66 PRO A 79 CYS A 80 SITE 2 AC1 8 SER A 81 DMS A 203 HOH A 309 HOH A 363 SITE 1 AC2 6 PHE A 3 SER A 86 ASP A 87 ILE A 88 SITE 2 AC2 6 CPT A 222 HOH A 366 SITE 1 AC3 7 ARG A 21 ASN A 65 ASP A 66 GLY A 67 SITE 2 AC3 7 DMS A 201 DMS A 205 HOH A 327 SITE 1 AC4 6 ASN A 44 ARG A 45 ASN A 77 ILE A 78 SITE 2 AC4 6 GLY A 117 HOH A 319 SITE 1 AC5 9 ASN A 65 ASN A 74 ASN A 77 ILE A 78 SITE 2 AC5 9 PRO A 79 LYS A 116 DMS A 203 CPT A 220 SITE 3 AC5 9 HOH A 403 SITE 1 AC6 2 ALA A 122 TRP A 123 SITE 1 AC7 8 SER A 24 LEU A 25 GLY A 26 GLN A 41 SITE 2 AC7 8 GLN A 121 ILE A 124 HOH A 346 HOH A 374 SITE 1 AC8 7 GLN A 57 ILE A 58 ASN A 59 TRP A 63 SITE 2 AC8 7 ALA A 107 TRP A 108 NO3 A 214 SITE 1 AC9 5 HIS A 15 ASN A 37 CPT A 221 CPT A 223 SITE 2 AC9 5 MEB A 228 SITE 1 BC1 6 GLU A 35 ASN A 44 ASP A 52 GLN A 57 SITE 2 BC1 6 HOH A 422 HOH A 440 SITE 1 BC2 4 PHE A 34 LYS A 96 ARG A 114 HOH A 423 SITE 1 BC3 10 ASP A 87 THR A 89 THR A 118 ASP A 119 SITE 2 BC3 10 CPT A 223 HOH A 329 HOH A 371 HOH A 425 SITE 3 BC3 10 HOH A 431 HOH A 439 SITE 1 BC4 4 SER A 86 ASP A 87 ASP A 119 ALA A 122 SITE 1 BC5 5 ASN A 59 TRP A 63 DMS A 208 HOH A 395 SITE 2 BC5 5 HOH A 398 SITE 1 BC6 5 ASN A 44 CYS A 76 HOH A 301 HOH A 322 SITE 2 BC6 5 HOH A 381 SITE 1 BC7 7 TYR A 23 ARG A 45 MET A 105 ASN A 106 SITE 2 BC7 7 TRP A 111 HOH A 379 HOH A 387 SITE 1 BC8 7 ASN A 46 THR A 47 ASP A 48 LYS A 97 SITE 2 BC8 7 HOH A 369 HOH A 381 HOH A 441 SITE 1 BC9 4 HIS A 15 CPT A 219 CPT A 222 CPT A 223 SITE 1 CC1 7 ARG A 14 HIS A 15 ASN A 37 ARG A 61 SITE 2 CC1 7 PT A 218 CPT A 222 CPT A 223 SITE 1 CC2 4 LYS A 116 DMS A 205 HOH A 430 HOH A 435 SITE 1 CC3 3 HIS A 15 PT A 209 MEB A 228 SITE 1 CC4 6 ARG A 14 HIS A 15 DMS A 202 PT A 218 SITE 2 CC4 6 CPT A 219 CPT A 223 SITE 1 CC5 9 HIS A 15 THR A 89 PT A 209 NO3 A 212 SITE 2 CC5 9 PT A 218 CPT A 219 CPT A 222 HOH A 405 SITE 3 CC5 9 HOH A 439 SITE 1 CC6 7 LYS A 33 PHE A 38 TRP A 62 ARG A 73 SITE 2 CC6 7 TRP A 123 MEB A 225 MEB A 227 SITE 1 CC7 10 GLY A 4 ARG A 5 GLU A 7 TRP A 62 SITE 2 CC7 10 TRP A 63 ARG A 73 LEU A 75 MEB A 224 SITE 3 CC7 10 MEB A 227 HOH A 417 SITE 1 CC8 10 PRO A 79 SER A 81 ALA A 82 ASN A 113 SITE 2 CC8 10 ARG A 114 CYS A 115 LYS A 116 THR A 118 SITE 3 CC8 10 HOH A 382 HOH A 436 SITE 1 CC9 7 GLY A 4 ARG A 5 PHE A 38 TRP A 62 SITE 2 CC9 7 ARG A 73 MEB A 224 MEB A 225 SITE 1 DC1 7 HIS A 15 LYS A 33 SER A 36 ASN A 37 SITE 2 DC1 7 LYS A 96 PT A 209 CPT A 221 SITE 1 DC2 4 LYS A 1 SER A 86 HOH A 351 HOH A 433 CRYST1 26.998 31.807 34.072 89.08 72.00 67.81 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037040 -0.015108 -0.013853 0.00000 SCALE2 0.000000 0.033954 0.003907 0.00000 SCALE3 0.000000 0.000000 0.031064 0.00000