HEADER HYDROLASE/HYDROLASE INHIBITOR 25-SEP-13 4MWP TITLE THERMOLYSIN IN COMPLEX WITH UBTLN46 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: MATURE FORM (UNP RESIDUES 233-548); COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS PROTEASE, METALLOPROTEASE, HYDROLYSIS OF PEPTIDE BONDS, 2- KEYWDS 2 PHOSPHORAMIDON, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.KRIMMER,A.HEINE,G.KLEBE REVDAT 3 20-SEP-23 4MWP 1 REMARK LINK REVDAT 2 16-APR-14 4MWP 1 JRNL REVDAT 1 02-APR-14 4MWP 0 JRNL AUTH S.G.KRIMMER,M.BETZ,A.HEINE,G.KLEBE JRNL TITL METHYL, ETHYL, PROPYL, BUTYL: FUTILE BUT NOT FOR WATER, AS JRNL TITL 2 THE CORRELATION OF STRUCTURE AND THERMODYNAMIC SIGNATURE JRNL TITL 3 SHOWS IN A CONGENERIC SERIES OF THERMOLYSIN INHIBITORS. JRNL REF CHEMMEDCHEM V. 4 833 2014 JRNL REFN ISSN 1860-7179 JRNL PMID 24623396 JRNL DOI 10.1002/CMDC.201400013 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.3_1479) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 92381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6459 - 3.8209 0.89 2998 164 0.1408 0.1556 REMARK 3 2 3.8209 - 3.0330 0.98 3094 184 0.1248 0.1412 REMARK 3 3 3.0330 - 2.6496 0.99 3098 159 0.1245 0.1419 REMARK 3 4 2.6496 - 2.4074 1.00 3115 134 0.1263 0.1697 REMARK 3 5 2.4074 - 2.2349 1.00 3078 157 0.1182 0.1517 REMARK 3 6 2.2349 - 2.1031 1.00 3023 174 0.1132 0.1394 REMARK 3 7 2.1031 - 1.9978 1.00 3066 161 0.1102 0.1382 REMARK 3 8 1.9978 - 1.9108 1.00 3028 178 0.1140 0.1313 REMARK 3 9 1.9108 - 1.8373 1.00 3018 176 0.1093 0.1308 REMARK 3 10 1.8373 - 1.7739 1.00 3017 165 0.1105 0.1346 REMARK 3 11 1.7739 - 1.7184 1.00 3048 163 0.1071 0.1318 REMARK 3 12 1.7184 - 1.6693 1.00 2992 162 0.1045 0.1305 REMARK 3 13 1.6693 - 1.6253 1.00 3035 159 0.1016 0.1132 REMARK 3 14 1.6253 - 1.5857 1.00 3048 139 0.0983 0.1321 REMARK 3 15 1.5857 - 1.5496 1.00 3026 152 0.0954 0.1281 REMARK 3 16 1.5496 - 1.5166 1.00 3002 153 0.0977 0.1315 REMARK 3 17 1.5166 - 1.4863 1.00 3019 150 0.0991 0.1351 REMARK 3 18 1.4863 - 1.4582 1.00 2972 183 0.1004 0.1344 REMARK 3 19 1.4582 - 1.4322 1.00 2984 163 0.1026 0.1380 REMARK 3 20 1.4322 - 1.4079 0.99 2975 150 0.1060 0.1579 REMARK 3 21 1.4079 - 1.3852 0.99 3001 164 0.1083 0.1406 REMARK 3 22 1.3852 - 1.3639 0.99 2941 167 0.1110 0.1643 REMARK 3 23 1.3639 - 1.3438 0.96 2884 153 0.1157 0.1368 REMARK 3 24 1.3438 - 1.3249 0.95 2836 143 0.1167 0.1356 REMARK 3 25 1.3249 - 1.3070 0.93 2826 124 0.1187 0.1476 REMARK 3 26 1.3070 - 1.2900 0.90 2689 145 0.1291 0.1592 REMARK 3 27 1.2900 - 1.2739 0.89 2644 148 0.1331 0.1629 REMARK 3 28 1.2739 - 1.2586 0.85 2550 131 0.1491 0.1922 REMARK 3 29 1.2586 - 1.2439 0.82 2464 130 0.1518 0.2081 REMARK 3 30 1.2439 - 1.2299 0.76 2276 103 0.1639 0.1918 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2689 REMARK 3 ANGLE : 1.118 3664 REMARK 3 CHIRALITY : 0.080 378 REMARK 3 PLANARITY : 0.005 486 REMARK 3 DIHEDRAL : 14.630 957 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.20700 REMARK 200 FOR SHELL : 3.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS/HCL, 1.9 M CSCL, 50% DMSO, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.65900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.31800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.48850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.14750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.82950 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.65900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.31800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.14750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.48850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.82950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 874 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE E 1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 95.19 -160.49 REMARK 500 THR E 26 -58.29 68.40 REMARK 500 SER E 92 -173.15 61.21 REMARK 500 SER E 107 -162.27 60.30 REMARK 500 ASN E 111 54.49 -90.67 REMARK 500 THR E 152 -100.19 -119.80 REMARK 500 ASN E 159 -143.04 54.02 REMARK 500 THR E 194 75.44 42.63 REMARK 500 ILE E 232 -60.53 -107.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD2 REMARK 620 2 ASP E 57 OD1 52.1 REMARK 620 3 ASP E 59 OD1 122.9 71.0 REMARK 620 4 GLN E 61 O 94.6 89.3 89.4 REMARK 620 5 GLN E 61 O 94.2 88.6 89.1 0.7 REMARK 620 6 HOH E 516 O 82.0 132.5 154.5 82.1 82.6 REMARK 620 7 HOH E 530 O 157.8 147.7 77.1 95.4 96.0 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 77.9 REMARK 620 3 GLU E 177 OE2 127.3 49.6 REMARK 620 4 ASP E 185 OD1 160.4 121.7 72.2 REMARK 620 5 GLU E 187 O 84.5 146.8 141.5 78.5 REMARK 620 6 GLU E 190 OE1 84.4 128.0 121.9 82.3 77.1 REMARK 620 7 GLU E 190 OE2 99.1 83.4 73.9 83.8 127.5 51.6 REMARK 620 8 HOH E 501 O 97.2 79.0 79.0 88.1 75.5 152.2 152.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 102.4 REMARK 620 3 GLU E 166 OE2 126.0 97.1 REMARK 620 4 2GC E 413 O15 111.7 125.5 95.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 92.4 REMARK 620 3 ASP E 185 OD2 88.5 90.5 REMARK 620 4 GLU E 190 OE2 84.2 171.8 81.9 REMARK 620 5 HOH E 564 O 88.5 93.2 175.3 94.2 REMARK 620 6 HOH E 872 O 172.6 93.0 96.6 91.1 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 76.7 REMARK 620 3 THR E 194 OG1 76.2 70.7 REMARK 620 4 ILE E 197 O 155.1 80.1 104.6 REMARK 620 5 ASP E 200 OD1 122.9 132.5 73.4 79.9 REMARK 620 6 HOH E 539 O 82.3 152.2 121.6 116.1 74.6 REMARK 620 7 HOH E 595 O 87.7 84.0 152.4 80.9 133.9 77.1 REMARK 620 N 1 2 3 4 5 6 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: P-((((BENZYLOXY)CARBONYL)AMINO)METHYL)-N-((S)-4- REMARK 630 METHYL-1-OXO-1-(PHENETHYLAMINO)PENTAN-2-YL)PHOSPHONAMIDIC ACID REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 2GC E 413 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ PGL LEU PEA REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2GC E 413 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MTW RELATED DB: PDB REMARK 900 RELATED ID: 4MXJ RELATED DB: PDB REMARK 900 RELATED ID: 4MZN RELATED DB: PDB REMARK 900 RELATED ID: 4N4E RELATED DB: PDB REMARK 900 RELATED ID: 4N5P RELATED DB: PDB REMARK 900 RELATED ID: 4N66 RELATED DB: PDB REMARK 900 RELATED ID: 4OI5 RELATED DB: PDB DBREF 4MWP E 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET ZN E 401 1 HET CA E 402 1 HET CA E 403 1 HET CA E 404 1 HET CA E 405 1 HET DMS E 406 4 HET DMS E 407 4 HET DMS E 408 4 HET DMS E 409 4 HET GOL E 410 6 HET GOL E 411 6 HET GOL E 412 12 HET 2GC E 413 52 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM 2GC P-((((BENZYLOXY)CARBONYL)AMINO)METHYL)-N-((S)-4-METHYL- HETNAM 2 2GC 1-OXO-1-(PHENETHYLAMINO)PENTAN-2-YL)PHOSPHONAMIDIC HETNAM 3 2GC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 2GC N~2~-[(R)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL) HETSYN 2 2GC (HYDROXY)PHOSPHORYL]-N-(2-PHENYLETHYL)-L-LEUCINAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 DMS 4(C2 H6 O S) FORMUL 11 GOL 3(C3 H8 O3) FORMUL 14 2GC C23 H32 N3 O5 P FORMUL 15 HOH *433(H2 O) HELIX 1 1 ALA E 64 TYR E 66 5 3 HELIX 2 2 ASP E 67 ASN E 89 1 23 HELIX 3 3 PRO E 132 GLY E 135 5 4 HELIX 4 4 GLY E 136 THR E 152 1 17 HELIX 5 5 GLN E 158 ASN E 181 1 24 HELIX 6 6 ASP E 207 GLY E 212 5 6 HELIX 7 7 HIS E 216 ARG E 220 5 5 HELIX 8 8 THR E 224 VAL E 230 1 7 HELIX 9 9 ASN E 233 GLY E 247 1 15 HELIX 10 10 GLY E 259 TYR E 274 1 16 HELIX 11 11 ASN E 280 GLY E 297 1 18 HELIX 12 12 SER E 300 VAL E 313 1 14 SHEET 1 A 5 ALA E 56 ASP E 57 0 SHEET 2 A 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 A 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 A 5 THR E 4 ARG E 11 -1 N GLY E 8 O ILE E 20 SHEET 5 A 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 B 3 GLN E 31 ASP E 32 0 SHEET 2 B 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 B 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 C 5 GLN E 31 ASP E 32 0 SHEET 2 C 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 C 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 C 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 C 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 D 2 GLU E 187 ILE E 188 0 SHEET 2 D 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 E 2 GLY E 248 HIS E 250 0 SHEET 2 E 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD2 ASP E 57 CA CA E 403 1555 1555 2.40 LINK OD1 ASP E 57 CA CA E 403 1555 1555 2.58 LINK OD1 ASP E 59 CA CA E 403 1555 1555 2.39 LINK O AGLN E 61 CA CA E 403 1555 1555 2.29 LINK O BGLN E 61 CA CA E 403 1555 1555 2.29 LINK OD2 ASP E 138 CA CA E 402 1555 1555 2.38 LINK NE2 HIS E 142 ZN ZN E 401 1555 1555 2.02 LINK NE2 HIS E 146 ZN ZN E 401 1555 1555 2.03 LINK OE2 GLU E 166 ZN ZN E 401 1555 1555 1.95 LINK OE1 GLU E 177 CA CA E 402 1555 1555 2.45 LINK OE2 GLU E 177 CA CA E 402 1555 1555 2.75 LINK OE2 GLU E 177 CA CA E 405 1555 1555 2.40 LINK O ASN E 183 CA CA E 405 1555 1555 2.30 LINK OD1 ASP E 185 CA CA E 402 1555 1555 2.49 LINK OD2 ASP E 185 CA CA E 405 1555 1555 2.35 LINK O GLU E 187 CA CA E 402 1555 1555 2.35 LINK OE1 GLU E 190 CA CA E 402 1555 1555 2.51 LINK OE2 GLU E 190 CA CA E 402 1555 1555 2.51 LINK OE2 GLU E 190 CA CA E 405 1555 1555 2.32 LINK O TYR E 193 CA CA E 404 1555 1555 2.36 LINK O THR E 194 CA CA E 404 1555 1555 2.36 LINK OG1 THR E 194 CA CA E 404 1555 1555 2.41 LINK O ILE E 197 CA CA E 404 1555 1555 2.29 LINK OD1 ASP E 200 CA CA E 404 1555 1555 2.37 LINK ZN ZN E 401 O15 2GC E 413 1555 1555 1.98 LINK CA CA E 402 O HOH E 501 1555 1555 2.41 LINK CA CA E 403 O HOH E 516 1555 1555 2.42 LINK CA CA E 403 O HOH E 530 1555 1555 2.42 LINK CA CA E 404 O HOH E 539 1555 1555 2.40 LINK CA CA E 404 O HOH E 595 1555 1555 2.44 LINK CA CA E 405 O HOH E 564 1555 1555 2.34 LINK CA CA E 405 O HOH E 872 1555 1555 2.29 CISPEP 1 LEU E 50 PRO E 51 0 3.57 SITE 1 AC1 4 HIS E 142 HIS E 146 GLU E 166 2GC E 413 SITE 1 AC2 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC2 6 GLU E 190 HOH E 501 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 516 SITE 2 AC3 6 HOH E 530 HOH E 873 SITE 1 AC4 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 6 HOH E 539 HOH E 595 SITE 1 AC5 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC5 6 HOH E 564 HOH E 872 SITE 1 AC6 5 ILE E 1 THR E 2 GLY E 3 GLN E 31 SITE 2 AC6 5 ASN E 33 SITE 1 AC7 4 TYR E 110 ASN E 112 PHE E 114 2GC E 413 SITE 1 AC8 5 GLY E 95 PRO E 184 TRP E 186 HOH E 578 SITE 2 AC8 5 HOH E 730 SITE 1 AC9 5 TYR E 66 HIS E 216 SER E 218 TYR E 251 SITE 2 AC9 5 HOH E 566 SITE 1 BC1 8 GLY E 109 TYR E 110 ASN E 111 ASN E 112 SITE 2 BC1 8 HOH E 662 HOH E 691 HOH E 931 HOH E 933 SITE 1 BC2 8 PHE E 114 TRP E 115 HIS E 146 TYR E 157 SITE 2 BC2 8 2GC E 413 HOH E 517 HOH E 557 HOH E 827 SITE 1 BC3 12 GLY E 247 GLY E 248 THR E 249 VAL E 255 SITE 2 BC3 12 GLN E 273 TYR E 274 LEU E 275 THR E 276 SITE 3 BC3 12 HOH E 551 HOH E 594 HOH E 607 HOH E 629 SITE 1 BC4 20 TYR E 106 ASN E 112 ALA E 113 PHE E 114 SITE 2 BC4 20 TRP E 115 VAL E 139 HIS E 142 GLU E 143 SITE 3 BC4 20 HIS E 146 TYR E 157 GLU E 166 LEU E 202 SITE 4 BC4 20 ARG E 203 HIS E 231 ZN E 401 DMS E 407 SITE 5 BC4 20 GOL E 411 HOH E 575 HOH E 892 HOH E 933 CRYST1 92.518 92.518 130.977 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010809 0.006240 0.000000 0.00000 SCALE2 0.000000 0.012481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007635 0.00000