HEADER LYASE 27-SEP-13 4MYD TITLE 1.37 ANGSTROM CRYSTAL STRUCTURE OF E. COLI 2-SUCCINYL-6-HYDROXY-2,4- TITLE 2 CYCLOHEXADIENE-1-CARBOXYLATE SYNTHASE (MENH) IN COMPLEX WITH SHCHC COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-SUCCINYL-6-HYDROXY-2,4-CYCLOHEXADIENE-1-CARBOXYLATE COMPND 3 SYNTHASE; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: SHCHC SYNTHASE; COMPND 6 EC: 4.2.99.20; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2263, JW2258, MENH, YFBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM KEYWDS ALPHA/BETA HYDROLASE FOLD, 2-SUCCINYL-6-HYDROXY-2, 4-CYCLOHEXADIENE- KEYWDS 2 1-CARBOXYLATE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SUN,S.YIN,Y.FENG,J.LI,J.ZHOU,C.LIU,G.ZHU,Z.GUO REVDAT 3 24-AUG-22 4MYD 1 JRNL REMARK REVDAT 2 07-MAY-14 4MYD 1 JRNL REVDAT 1 23-APR-14 4MYD 0 JRNL AUTH Y.SUN,S.YIN,Y.FENG,J.LI,J.ZHOU,C.LIU,G.ZHU,Z.GUO JRNL TITL MOLECULAR BASIS OF THE GENERAL BASE CATALYSIS OF AN ALPHA / JRNL TITL 2 BETA-HYDROLASE CATALYTIC TRIAD. JRNL REF J.BIOL.CHEM. V. 289 15867 2014 JRNL REFN ESSN 1083-351X JRNL PMID 24737327 JRNL DOI 10.1074/JBC.M113.535641 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 161886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 8106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8406 - 4.2680 0.98 5020 291 0.1623 0.1812 REMARK 3 2 4.2680 - 3.3881 1.00 5125 277 0.1141 0.1520 REMARK 3 3 3.3881 - 2.9599 1.00 5077 301 0.1332 0.1694 REMARK 3 4 2.9599 - 2.6893 1.00 5149 274 0.1292 0.1506 REMARK 3 5 2.6893 - 2.4966 1.00 5110 295 0.1249 0.1815 REMARK 3 6 2.4966 - 2.3494 1.00 5083 264 0.1152 0.1447 REMARK 3 7 2.3494 - 2.2318 1.00 5150 269 0.1098 0.1470 REMARK 3 8 2.2318 - 2.1346 1.00 5138 245 0.1156 0.1498 REMARK 3 9 2.1346 - 2.0524 1.00 5209 243 0.1105 0.1425 REMARK 3 10 2.0524 - 1.9816 1.00 5081 287 0.1145 0.1527 REMARK 3 11 1.9816 - 1.9197 1.00 5129 260 0.1132 0.1480 REMARK 3 12 1.9197 - 1.8648 1.00 5126 270 0.1089 0.1522 REMARK 3 13 1.8648 - 1.8157 1.00 5153 285 0.1106 0.1654 REMARK 3 14 1.8157 - 1.7714 1.00 5059 307 0.1105 0.1549 REMARK 3 15 1.7714 - 1.7311 1.00 5146 286 0.1063 0.1481 REMARK 3 16 1.7311 - 1.6943 1.00 5139 270 0.1095 0.1608 REMARK 3 17 1.6943 - 1.6604 1.00 5140 262 0.1086 0.1562 REMARK 3 18 1.6604 - 1.6291 1.00 5126 273 0.1146 0.1629 REMARK 3 19 1.6291 - 1.6000 1.00 5089 289 0.1195 0.1792 REMARK 3 20 1.6000 - 1.5728 1.00 5139 275 0.1172 0.1500 REMARK 3 21 1.5728 - 1.5475 1.00 5157 283 0.1265 0.1825 REMARK 3 22 1.5475 - 1.5237 1.00 5148 246 0.1365 0.1973 REMARK 3 23 1.5237 - 1.5012 1.00 5062 270 0.1389 0.1792 REMARK 3 24 1.5012 - 1.4801 1.00 5194 267 0.1414 0.2054 REMARK 3 25 1.4801 - 1.4601 1.00 5149 255 0.1552 0.1941 REMARK 3 26 1.4601 - 1.4411 1.00 5156 257 0.1677 0.2113 REMARK 3 27 1.4411 - 1.4231 1.00 5069 273 0.1786 0.2265 REMARK 3 28 1.4231 - 1.4060 1.00 5259 237 0.1984 0.2685 REMARK 3 29 1.4060 - 1.3896 1.00 5102 242 0.2123 0.2405 REMARK 3 30 1.3896 - 1.3740 0.99 5096 253 0.2350 0.2904 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7966 REMARK 3 ANGLE : 1.191 10827 REMARK 3 CHIRALITY : 0.052 1167 REMARK 3 PLANARITY : 0.006 1444 REMARK 3 DIHEDRAL : 14.526 2810 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161905 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 46.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M NA/K PHOSPHATE PH 6.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.61667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.23333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 ALA C 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 PHE A 252 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 198 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 119 CG CD OE1 OE2 REMARK 470 GLU C 123 CG CD OE1 OE2 REMARK 470 ARG C 126 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 149 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER C 196 O HOH C 307 1.47 REMARK 500 HH22 ARG C 192 O HOH C 312 1.53 REMARK 500 HH11 ARG B 209 O HOH B 685 1.57 REMARK 500 HZ1 LYS A 11 O ARG C 251 1.58 REMARK 500 O LEU C 115 O HOH C 338 1.87 REMARK 500 O ARG C 192 O HOH C 307 1.93 REMARK 500 OD1 ASP B 158 O HOH B 711 1.95 REMARK 500 OG SER A 169 O HOH A 606 2.03 REMARK 500 O HOH B 590 O HOH B 618 2.03 REMARK 500 OD1 ASP A 158 O HOH A 599 2.05 REMARK 500 OE1 GLN B 133 O HOH B 609 2.05 REMARK 500 OE1 GLU C 208 O HOH C 354 2.08 REMARK 500 O HOH B 546 O HOH B 689 2.09 REMARK 500 O HOH B 604 O HOH B 621 2.10 REMARK 500 O HOH A 541 O HOH A 593 2.10 REMARK 500 O GLY C 114 O HOH C 312 2.10 REMARK 500 OD2 ASP B 66 O HOH B 657 2.11 REMARK 500 OG SER C 196 O HOH C 319 2.11 REMARK 500 O HOH A 536 O HOH A 619 2.12 REMARK 500 O HOH B 626 O HOH B 644 2.15 REMARK 500 O HOH A 543 O HOH A 737 2.17 REMARK 500 O HOH A 603 O HOH A 655 2.17 REMARK 500 OE1 GLN B 130 O HOH B 578 2.17 REMARK 500 O HOH B 638 O HOH B 661 2.18 REMARK 500 O HOH A 592 O HOH A 647 2.18 REMARK 500 O HOH A 528 O HOH A 744 2.19 REMARK 500 OD2 ASP A 79 O HOH A 464 2.19 REMARK 500 O HOH A 726 O HOH A 735 2.19 REMARK 500 O HOH B 603 O HOH B 697 2.19 REMARK 500 O HOH B 704 O HOH B 705 2.19 REMARK 500 O HOH A 508 O HOH A 689 2.19 REMARK 500 O HOH B 501 O HOH B 680 2.19 REMARK 500 O HOH B 543 O HOH B 566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 104 CB CYS A 104 SG -0.125 REMARK 500 CYS B 104 CB CYS B 104 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 124 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 24 -0.52 76.07 REMARK 500 PHE A 37 56.37 -98.90 REMARK 500 SER A 86 -119.20 58.66 REMARK 500 ALA A 221 42.74 -89.45 REMARK 500 SER B 24 -1.37 76.79 REMARK 500 PHE B 37 55.96 -98.99 REMARK 500 SER B 86 -119.57 59.19 REMARK 500 SER C 24 -2.01 79.52 REMARK 500 SER C 24 -1.01 76.48 REMARK 500 SER C 86 -120.15 60.66 REMARK 500 SER C 86 -118.64 60.12 REMARK 500 LEU C 115 172.36 -59.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 164 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 164 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MXD RELATED DB: PDB REMARK 900 RELATED ID: 4MYS RELATED DB: PDB DBREF 4MYD A 1 252 UNP P37355 MENH_ECOLI 1 252 DBREF 4MYD B 1 252 UNP P37355 MENH_ECOLI 1 252 DBREF 4MYD C 1 252 UNP P37355 MENH_ECOLI 1 252 SEQRES 1 A 252 MET ILE LEU HIS ALA GLN ALA LYS HIS GLY LYS PRO GLY SEQRES 2 A 252 LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SER GLY ASP SEQRES 3 A 252 CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA PHE ALA ASP SEQRES 4 A 252 TYR SER ARG LEU TYR VAL ASP LEU PRO GLY HIS GLY GLY SEQRES 5 A 252 SER ALA ALA ILE SER VAL ASP GLY PHE ASP ASP VAL THR SEQRES 6 A 252 ASP LEU LEU ARG LYS THR LEU VAL SER TYR ASN ILE LEU SEQRES 7 A 252 ASP PHE TRP LEU VAL GLY TYR SER LEU GLY GLY ARG VAL SEQRES 8 A 252 ALA MET MET ALA ALA CYS GLN GLY LEU ALA GLY LEU CYS SEQRES 9 A 252 GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY LEU GLN ASN SEQRES 10 A 252 ALA GLU GLN ARG ALA GLU ARG GLN ARG SER ASP ARG GLN SEQRES 11 A 252 TRP VAL GLN ARG PHE LEU THR GLU PRO LEU THR ALA VAL SEQRES 12 A 252 PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE ALA SER LEU SEQRES 13 A 252 ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA LEU ARG SER SEQRES 14 A 252 ASN ASN ASN GLY ALA THR LEU ALA ALA MET LEU GLU ALA SEQRES 15 A 252 THR SER LEU ALA VAL GLN PRO ASP LEU ARG ALA ASN LEU SEQRES 16 A 252 SER ALA ARG THR PHE ALA PHE TYR TYR LEU CYS GLY GLU SEQRES 17 A 252 ARG ASP SER LYS PHE ARG ALA LEU ALA ALA GLU LEU ALA SEQRES 18 A 252 ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY HIS ASN ALA SEQRES 19 A 252 HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SER LEU ALA SEQRES 20 A 252 GLN ILE LEU ARG PHE SEQRES 1 B 252 MET ILE LEU HIS ALA GLN ALA LYS HIS GLY LYS PRO GLY SEQRES 2 B 252 LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SER GLY ASP SEQRES 3 B 252 CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA PHE ALA ASP SEQRES 4 B 252 TYR SER ARG LEU TYR VAL ASP LEU PRO GLY HIS GLY GLY SEQRES 5 B 252 SER ALA ALA ILE SER VAL ASP GLY PHE ASP ASP VAL THR SEQRES 6 B 252 ASP LEU LEU ARG LYS THR LEU VAL SER TYR ASN ILE LEU SEQRES 7 B 252 ASP PHE TRP LEU VAL GLY TYR SER LEU GLY GLY ARG VAL SEQRES 8 B 252 ALA MET MET ALA ALA CYS GLN GLY LEU ALA GLY LEU CYS SEQRES 9 B 252 GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY LEU GLN ASN SEQRES 10 B 252 ALA GLU GLN ARG ALA GLU ARG GLN ARG SER ASP ARG GLN SEQRES 11 B 252 TRP VAL GLN ARG PHE LEU THR GLU PRO LEU THR ALA VAL SEQRES 12 B 252 PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE ALA SER LEU SEQRES 13 B 252 ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA LEU ARG SER SEQRES 14 B 252 ASN ASN ASN GLY ALA THR LEU ALA ALA MET LEU GLU ALA SEQRES 15 B 252 THR SER LEU ALA VAL GLN PRO ASP LEU ARG ALA ASN LEU SEQRES 16 B 252 SER ALA ARG THR PHE ALA PHE TYR TYR LEU CYS GLY GLU SEQRES 17 B 252 ARG ASP SER LYS PHE ARG ALA LEU ALA ALA GLU LEU ALA SEQRES 18 B 252 ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY HIS ASN ALA SEQRES 19 B 252 HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SER LEU ALA SEQRES 20 B 252 GLN ILE LEU ARG PHE SEQRES 1 C 252 MET ILE LEU HIS ALA GLN ALA LYS HIS GLY LYS PRO GLY SEQRES 2 C 252 LEU PRO TRP LEU VAL PHE LEU HIS GLY PHE SER GLY ASP SEQRES 3 C 252 CYS HIS GLU TRP GLN GLU VAL GLY GLU ALA PHE ALA ASP SEQRES 4 C 252 TYR SER ARG LEU TYR VAL ASP LEU PRO GLY HIS GLY GLY SEQRES 5 C 252 SER ALA ALA ILE SER VAL ASP GLY PHE ASP ASP VAL THR SEQRES 6 C 252 ASP LEU LEU ARG LYS THR LEU VAL SER TYR ASN ILE LEU SEQRES 7 C 252 ASP PHE TRP LEU VAL GLY TYR SER LEU GLY GLY ARG VAL SEQRES 8 C 252 ALA MET MET ALA ALA CYS GLN GLY LEU ALA GLY LEU CYS SEQRES 9 C 252 GLY VAL ILE VAL GLU GLY GLY HIS PRO GLY LEU GLN ASN SEQRES 10 C 252 ALA GLU GLN ARG ALA GLU ARG GLN ARG SER ASP ARG GLN SEQRES 11 C 252 TRP VAL GLN ARG PHE LEU THR GLU PRO LEU THR ALA VAL SEQRES 12 C 252 PHE ALA ASP TRP TYR GLN GLN PRO VAL PHE ALA SER LEU SEQRES 13 C 252 ASN ASP ASP GLN ARG ARG GLU LEU VAL ALA LEU ARG SER SEQRES 14 C 252 ASN ASN ASN GLY ALA THR LEU ALA ALA MET LEU GLU ALA SEQRES 15 C 252 THR SER LEU ALA VAL GLN PRO ASP LEU ARG ALA ASN LEU SEQRES 16 C 252 SER ALA ARG THR PHE ALA PHE TYR TYR LEU CYS GLY GLU SEQRES 17 C 252 ARG ASP SER LYS PHE ARG ALA LEU ALA ALA GLU LEU ALA SEQRES 18 C 252 ALA ASP CYS HIS VAL ILE PRO ARG ALA GLY HIS ASN ALA SEQRES 19 C 252 HIS ARG GLU ASN PRO ALA GLY VAL ILE ALA SER LEU ALA SEQRES 20 C 252 GLN ILE LEU ARG PHE HET 164 A 301 27 HET 164 B 301 27 HETNAM 164 2-(3-CARBOXYPROPIONYL)-6-HYDROXY-CYCLOHEXA-2,4-DIENE HETNAM 2 164 CARBOXYLIC ACID FORMUL 4 164 2(C11 H12 O6) FORMUL 6 HOH *797(H2 O) HELIX 1 1 TRP A 30 GLU A 35 1 6 HELIX 2 2 HIS A 50 ALA A 54 5 5 HELIX 3 3 GLY A 60 TYR A 75 1 16 HELIX 4 4 SER A 86 GLY A 99 1 14 HELIX 5 5 ASN A 117 GLU A 138 1 22 HELIX 6 6 PRO A 139 TYR A 148 1 10 HELIX 7 7 GLN A 149 ALA A 154 5 6 HELIX 8 8 ASN A 157 SER A 169 1 13 HELIX 9 9 ASN A 172 THR A 183 1 12 HELIX 10 10 SER A 184 GLN A 188 5 5 HELIX 11 11 LEU A 191 ALA A 197 1 7 HELIX 12 12 ASP A 210 GLU A 219 1 10 HELIX 13 13 ASN A 233 ASN A 238 1 6 HELIX 14 14 ASN A 238 ARG A 251 1 14 HELIX 15 15 TRP B 30 GLU B 35 1 6 HELIX 16 16 HIS B 50 ALA B 54 5 5 HELIX 17 17 GLY B 60 TYR B 75 1 16 HELIX 18 18 SER B 86 GLY B 99 1 14 HELIX 19 19 ASN B 117 GLU B 138 1 22 HELIX 20 20 PRO B 139 TYR B 148 1 10 HELIX 21 21 GLN B 149 ALA B 154 5 6 HELIX 22 22 ASN B 157 SER B 169 1 13 HELIX 23 23 ASN B 172 THR B 183 1 12 HELIX 24 24 SER B 184 GLN B 188 5 5 HELIX 25 25 LEU B 191 ALA B 197 1 7 HELIX 26 26 ASP B 210 GLU B 219 1 10 HELIX 27 27 ASN B 233 ASN B 238 1 6 HELIX 28 28 ASN B 238 ARG B 251 1 14 HELIX 29 29 TRP C 30 GLU C 35 1 6 HELIX 30 30 HIS C 50 ALA C 54 5 5 HELIX 31 31 GLY C 60 TYR C 75 1 16 HELIX 32 32 SER C 86 GLY C 99 1 14 HELIX 33 33 ASN C 117 GLU C 138 1 22 HELIX 34 34 PRO C 139 TYR C 148 1 10 HELIX 35 35 GLN C 149 ALA C 154 5 6 HELIX 36 36 ASN C 157 SER C 169 1 13 HELIX 37 37 ASN C 172 THR C 183 1 12 HELIX 38 38 SER C 184 GLN C 188 5 5 HELIX 39 39 LEU C 191 ALA C 197 1 7 HELIX 40 40 ASP C 210 GLU C 219 1 10 HELIX 41 41 ASN C 233 ASN C 238 1 6 HELIX 42 42 ASN C 238 ARG C 251 1 14 SHEET 1 A 7 ALA A 5 LYS A 8 0 SHEET 2 A 7 SER A 41 VAL A 45 -1 O TYR A 44 N GLN A 6 SHEET 3 A 7 TRP A 16 LEU A 20 1 N LEU A 17 O SER A 41 SHEET 4 A 7 PHE A 80 TYR A 85 1 O TRP A 81 N VAL A 18 SHEET 5 A 7 LEU A 103 GLU A 109 1 O CYS A 104 N PHE A 80 SHEET 6 A 7 ALA A 201 GLY A 207 1 O LEU A 205 N VAL A 108 SHEET 7 A 7 ASP A 223 ILE A 227 1 O HIS A 225 N TYR A 204 SHEET 1 B 7 ALA B 5 LYS B 8 0 SHEET 2 B 7 SER B 41 VAL B 45 -1 O TYR B 44 N GLN B 6 SHEET 3 B 7 TRP B 16 LEU B 20 1 N PHE B 19 O LEU B 43 SHEET 4 B 7 PHE B 80 TYR B 85 1 O VAL B 83 N VAL B 18 SHEET 5 B 7 LEU B 103 GLU B 109 1 O CYS B 104 N PHE B 80 SHEET 6 B 7 ALA B 201 GLY B 207 1 O LEU B 205 N VAL B 108 SHEET 7 B 7 ASP B 223 ILE B 227 1 O HIS B 225 N TYR B 204 SHEET 1 C 7 ALA C 5 LYS C 8 0 SHEET 2 C 7 SER C 41 VAL C 45 -1 O ARG C 42 N LYS C 8 SHEET 3 C 7 TRP C 16 LEU C 20 1 N LEU C 17 O LEU C 43 SHEET 4 C 7 PHE C 80 TYR C 85 1 O VAL C 83 N LEU C 20 SHEET 5 C 7 LEU C 103 GLU C 109 1 O CYS C 104 N PHE C 80 SHEET 6 C 7 PHE C 202 GLY C 207 1 O LEU C 205 N VAL C 108 SHEET 7 C 7 ASP C 223 ILE C 227 1 O HIS C 225 N TYR C 204 SITE 1 AC1 15 GLY A 22 PHE A 23 TYR A 85 SER A 86 SITE 2 AC1 15 LEU A 87 ARG A 90 ARG A 124 TRP A 147 SITE 3 AC1 15 TYR A 148 PHE A 153 HOH A 412 HOH A 418 SITE 4 AC1 15 HOH A 424 HOH A 440 HOH A 627 SITE 1 AC2 15 GLY B 22 PHE B 23 TYR B 85 SER B 86 SITE 2 AC2 15 LEU B 87 ARG B 90 TRP B 147 TYR B 148 SITE 3 AC2 15 PHE B 153 HOH B 411 HOH B 420 HOH B 422 SITE 4 AC2 15 HOH B 430 HOH B 433 HOH B 459 CRYST1 121.850 121.850 46.850 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008207 0.004738 0.000000 0.00000 SCALE2 0.000000 0.009476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021345 0.00000