HEADER HEME-BINDING PROTEIN 27-SEP-13 4MYP TITLE STRUCTURE OF THE CENTRAL NEAT DOMAIN, N2, OF THE LISTERIAL HBP2 TITLE 2 PROTEIN COMPLEXED WITH HEME COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-REGULATED SURFACE DETERMINANT PROTEIN A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 183-303; COMPND 5 SYNONYM: P64 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 STRAIN: EGD-E; SOURCE 5 GENE: BN418_2635, LMO2185; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS-SUMO KEYWDS HEME, NEAT DOMAIN, LISTERIA, HEMOGLOBIN, N2, HBP, HBP2, HEME-BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.R.MALMIRCHEGINI,M.R.SAWAYA,R.T.CLUBB REVDAT 3 28-FEB-24 4MYP 1 REMARK SEQADV LINK REVDAT 2 31-DEC-14 4MYP 1 JRNL REVDAT 1 22-OCT-14 4MYP 0 JRNL AUTH G.R.MALMIRCHEGINI,M.SJODT,S.SHNITKIND,M.R.SAWAYA,J.ROSINSKI, JRNL AUTH 2 S.M.NEWTON,P.E.KLEBBA,R.T.CLUBB JRNL TITL NOVEL MECHANISM OF HEMIN CAPTURE BY HBP2, THE JRNL TITL 2 HEMOGLOBIN-BINDING HEMOPHORE FROM LISTERIA MONOCYTOGENES. JRNL REF J.BIOL.CHEM. V. 289 34886 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25315777 JRNL DOI 10.1074/JBC.M114.583013 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 22884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3012 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2290 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2866 REMARK 3 BIN R VALUE (WORKING SET) : 0.2273 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1865 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.74130 REMARK 3 B22 (A**2) : -10.27620 REMARK 3 B33 (A**2) : 7.53500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.56840 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.120 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.140 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.120 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2044 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2785 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 674 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 63 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 296 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2044 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 4 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 253 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2188 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.65 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -21.9724 -0.2148 22.6581 REMARK 3 T TENSOR REMARK 3 T11: -0.0778 T22: -0.0182 REMARK 3 T33: -0.0173 T12: -0.0003 REMARK 3 T13: -0.0070 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.1676 L22: 1.3923 REMARK 3 L33: 1.3634 L12: -0.1191 REMARK 3 L13: -0.3772 L23: 0.1598 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.0340 S13: -0.0239 REMARK 3 S21: 0.1347 S22: -0.0532 S23: 0.1121 REMARK 3 S31: 0.0445 S32: 0.0626 S33: 0.0128 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -2.1495 7.9710 -5.3434 REMARK 3 T TENSOR REMARK 3 T11: -0.0286 T22: -0.0128 REMARK 3 T33: -0.0810 T12: -0.0009 REMARK 3 T13: 0.0076 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 2.2571 L22: 0.7979 REMARK 3 L33: 1.7293 L12: -0.4866 REMARK 3 L13: -0.3370 L23: -0.2093 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.0480 S13: 0.0480 REMARK 3 S21: -0.1403 S22: 0.0207 S23: -0.0046 REMARK 3 S31: 0.1398 S32: -0.0843 S33: 0.0273 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MYP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 21.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES (PH 6.0), 10 MM ZNCL2, 20% REMARK 280 POLYETHYLENE GLYCOL 6,000, VAPOR DIFFUSION, TEMPERATURE 298K, REMARK 280 VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.84500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 182 REMARK 465 SER B 182 REMARK 465 THR B 183 REMARK 465 LEU B 184 REMARK 465 SER B 185 REMARK 465 ASP B 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 188 -48.02 -134.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 257 OD2 REMARK 620 2 HOH A 526 O 102.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 277 ND1 REMARK 620 2 ASP A 294 OD1 106.6 REMARK 620 3 HOH A 501 O 105.3 108.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 280 OH REMARK 620 2 HEM A 401 NA 93.7 REMARK 620 3 HEM A 401 NB 96.1 91.1 REMARK 620 4 HEM A 401 NC 95.9 169.9 90.8 REMARK 620 5 HEM A 401 ND 92.2 87.1 171.6 89.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 277 ND1 REMARK 620 2 ASP B 294 OD1 108.1 REMARK 620 3 HOH B 501 O 104.9 104.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 280 OH REMARK 620 2 HEM B 401 NA 96.8 REMARK 620 3 HEM B 401 NB 99.5 88.4 REMARK 620 4 HEM B 401 NC 93.9 169.3 89.6 REMARK 620 5 HEM B 401 ND 93.4 88.5 167.0 91.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 406 DBREF 4MYP A 183 303 UNP Q9KGV9 Q9KGV9_LISMN 183 303 DBREF 4MYP B 183 303 UNP Q9KGV9 Q9KGV9_LISMN 183 303 SEQADV 4MYP SER A 182 UNP Q9KGV9 EXPRESSION TAG SEQADV 4MYP SER B 182 UNP Q9KGV9 EXPRESSION TAG SEQRES 1 A 122 SER THR LEU SER ASP GLY ILE TYR THR ILE PRO PHE VAL SEQRES 2 A 122 ALA LYS LYS ALA ASN ASP ASP SER ASN SER SER MET GLN SEQRES 3 A 122 ASN TYR PHE ASN ASN PRO ALA TRP LEU LYS VAL LYS ASN SEQRES 4 A 122 GLY LYS LYS MET VAL ALA MET THR VAL ASN ASP ASN LYS SEQRES 5 A 122 THR VAL THR ALA LEU LYS THR THR LEU ALA GLY THR LEU SEQRES 6 A 122 GLN ASP VAL LYS VAL VAL SER GLU ASP LYS ASP ALA ASN SEQRES 7 A 122 THR ARG ILE VAL GLU PHE GLU VAL GLU ASP LEU ASN GLN SEQRES 8 A 122 PRO LEU ALA ALA HIS VAL ASN TYR GLU ALA PRO PHE ASN SEQRES 9 A 122 GLY SER VAL TYR LYS GLY GLN ALA ASP PHE ARG TYR VAL SEQRES 10 A 122 PHE ASP THR ALA LYS SEQRES 1 B 122 SER THR LEU SER ASP GLY ILE TYR THR ILE PRO PHE VAL SEQRES 2 B 122 ALA LYS LYS ALA ASN ASP ASP SER ASN SER SER MET GLN SEQRES 3 B 122 ASN TYR PHE ASN ASN PRO ALA TRP LEU LYS VAL LYS ASN SEQRES 4 B 122 GLY LYS LYS MET VAL ALA MET THR VAL ASN ASP ASN LYS SEQRES 5 B 122 THR VAL THR ALA LEU LYS THR THR LEU ALA GLY THR LEU SEQRES 6 B 122 GLN ASP VAL LYS VAL VAL SER GLU ASP LYS ASP ALA ASN SEQRES 7 B 122 THR ARG ILE VAL GLU PHE GLU VAL GLU ASP LEU ASN GLN SEQRES 8 B 122 PRO LEU ALA ALA HIS VAL ASN TYR GLU ALA PRO PHE ASN SEQRES 9 B 122 GLY SER VAL TYR LYS GLY GLN ALA ASP PHE ARG TYR VAL SEQRES 10 B 122 PHE ASP THR ALA LYS HET HEM A 401 43 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET HEM B 401 43 HET ZN B 402 1 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 ZN 4(ZN 2+) FORMUL 7 GOL 9(C3 H8 O3) FORMUL 18 HOH *113(H2 O) HELIX 1 1 SER A 204 PHE A 210 5 7 HELIX 2 2 SER B 204 PHE B 210 5 7 SHEET 1 A 5 GLY A 187 ILE A 191 0 SHEET 2 A 5 ALA A 214 LYS A 219 -1 O LEU A 216 N TYR A 189 SHEET 3 A 5 LYS A 222 VAL A 229 -1 O ALA A 226 N TRP A 215 SHEET 4 A 5 THR A 260 GLU A 266 -1 O ARG A 261 N VAL A 229 SHEET 5 A 5 LYS A 250 ASP A 255 -1 N ASP A 255 O THR A 260 SHEET 1 B 5 PHE A 193 LYS A 197 0 SHEET 2 B 5 SER A 287 PHE A 299 -1 O ARG A 296 N LYS A 196 SHEET 3 B 5 LEU A 274 PHE A 284 -1 N PHE A 284 O SER A 287 SHEET 4 B 5 VAL A 235 LEU A 242 -1 N LYS A 239 O HIS A 277 SHEET 5 B 5 THR A 245 ASP A 248 -1 O THR A 245 N LEU A 242 SHEET 1 C 5 TYR B 189 ILE B 191 0 SHEET 2 C 5 ALA B 214 LYS B 219 -1 O LEU B 216 N TYR B 189 SHEET 3 C 5 LYS B 222 VAL B 229 -1 O MET B 224 N LYS B 217 SHEET 4 C 5 THR B 260 GLU B 266 -1 O ARG B 261 N VAL B 229 SHEET 5 C 5 LYS B 250 ASP B 255 -1 N ASP B 255 O THR B 260 SHEET 1 D 5 PHE B 193 LYS B 197 0 SHEET 2 D 5 SER B 287 PHE B 299 -1 O ARG B 296 N LYS B 196 SHEET 3 D 5 LEU B 274 PHE B 284 -1 N ALA B 282 O TYR B 289 SHEET 4 D 5 VAL B 235 LEU B 242 -1 N LYS B 239 O HIS B 277 SHEET 5 D 5 THR B 245 ASP B 248 -1 O THR B 245 N LEU B 242 LINK OD1 ASP A 255 ZN ZN A 403 1555 1555 2.38 LINK OD2 ASP A 257 ZN ZN A 404 1555 1555 2.48 LINK ND1 HIS A 277 ZN ZN A 402 1555 1555 1.94 LINK OH TYR A 280 FE HEM A 401 1555 1555 2.24 LINK OD1 ASP A 294 ZN ZN A 402 1555 1555 1.93 LINK ZN ZN A 402 O HOH A 501 1555 1555 2.13 LINK ZN ZN A 404 O HOH A 526 1555 1555 2.36 LINK ND1 HIS B 277 ZN ZN B 402 1555 1555 1.91 LINK OH TYR B 280 FE HEM B 401 1555 1555 2.36 LINK OD1 ASP B 294 ZN ZN B 402 1555 1555 1.93 LINK ZN ZN B 402 O HOH B 501 1555 1555 2.30 CISPEP 1 ASN A 212 PRO A 213 0 -5.33 CISPEP 2 ASN B 212 PRO B 213 0 -4.83 SITE 1 AC1 18 LYS A 197 SER A 204 SER A 205 MET A 206 SITE 2 AC1 18 TYR A 209 TYR A 280 ALA A 282 PHE A 284 SITE 3 AC1 18 TYR A 289 ALA A 293 GOL A 407 HOH A 507 SITE 4 AC1 18 HOH A 529 HOH A 560 HOH A 564 PHE B 284 SITE 5 AC1 18 HEM B 401 HOH B 509 SITE 1 AC2 3 HIS A 277 ASP A 294 HOH A 501 SITE 1 AC3 3 ASP A 255 ASP A 257 HOH A 502 SITE 1 AC4 2 ASP A 257 HOH A 526 SITE 1 AC5 5 ASN A 211 PRO A 213 MET A 227 THR A 228 SITE 2 AC5 5 HOH A 562 SITE 1 AC6 5 THR A 183 LYS A 223 ASP A 269 LEU A 270 SITE 2 AC6 5 ASN A 271 SITE 1 AC7 5 TYR A 280 TYR A 289 GLY A 291 GLN A 292 SITE 2 AC7 5 HEM A 401 SITE 1 AC8 3 PHE A 193 VAL A 194 ASN A 212 SITE 1 AC9 5 ASN A 203 SER A 204 SER A 205 GLN A 207 SITE 2 AC9 5 ASN A 208 SITE 1 BC1 14 HEM A 401 LYS B 197 SER B 204 SER B 205 SITE 2 BC1 14 MET B 206 TYR B 209 TYR B 280 ALA B 282 SITE 3 BC1 14 PHE B 284 TYR B 289 ALA B 293 GOL B 406 SITE 4 BC1 14 HOH B 502 HOH B 509 SITE 1 BC2 4 GLU A 281 HIS B 277 ASP B 294 HOH B 501 SITE 1 BC3 6 PHE A 284 ASN B 208 TYR B 209 ASN B 230 SITE 2 BC3 6 ASP B 231 ALA B 243 SITE 1 BC4 4 GLU B 254 ASP B 255 LYS B 256 ASP B 257 SITE 1 BC5 5 THR A 234 GLU A 281 PRO A 283 VAL A 288 SITE 2 BC5 5 GLN B 292 SITE 1 BC6 5 LYS A 256 TYR B 280 TYR B 289 GLN B 292 SITE 2 BC6 5 HEM B 401 CRYST1 32.730 67.690 58.480 90.00 91.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030553 0.000000 0.000864 0.00000 SCALE2 0.000000 0.014773 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017107 0.00000