HEADER TRANSFERASE/TRANSFERASE INHIBITOR 29-SEP-13 4MZ4 TITLE DISCOVERY OF AN IRREVERSIBLE HCV NS5B POLYMERASE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2420-2989; COMPND 5 SYNONYM: NS5B, P68; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 420174; SOURCE 5 STRAIN: HC-J4; SOURCE 6 GENE: NS5B; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS RNA-DEPENDENT RNA POLYMERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZENG,G.N.ANILKUMAR,S.B.ROSENBLUM,H.-C.HUANG,C.A.LESBURG,Y.JIANG, AUTHOR 2 O.SELYUTIN,T.-Y.CHAN,F.BENNETT,K.X.CHEN,S.VENKATRAMAN,M.SANNIGRAHI, AUTHOR 3 F.VELAZQUEZ,J.S.DUCA,S.GAVALAS,Y.HUANG,H.PU,L.WANG,P.PINTO, AUTHOR 4 B.VIBULBHAN,S.AGRAWAL,E.FERRARI,C.-K.JIANG,C.LI,D.HESK,J.GESELL, AUTHOR 5 S.SOROTA,N.-Y.SHIH,F.G.NJOROGE,J.A.KOZLOWSKI REVDAT 2 18-DEC-13 4MZ4 1 JRNL REVDAT 1 11-DEC-13 4MZ4 0 JRNL AUTH Q.ZENG,A.G.NAIR,S.B.ROSENBLUM,H.C.HUANG,C.A.LESBURG,Y.JIANG, JRNL AUTH 2 O.SELYUTIN,T.Y.CHAN,F.BENNETT,K.X.CHEN,S.VENKATRAMAN, JRNL AUTH 3 M.SANNIGRAHI,F.VELAZQUEZ,J.S.DUCA,S.GAVALAS,Y.HUANG,H.PU, JRNL AUTH 4 L.WANG,P.PINTO,B.VIBULBHAN,S.AGRAWAL,E.FERRARI,C.K.JIANG, JRNL AUTH 5 C.LI,D.HESK,J.GESELL,S.SOROTA,N.Y.SHIH,F.G.NJOROGE, JRNL AUTH 6 J.A.KOZLOWSKI JRNL TITL DISCOVERY OF AN IRREVERSIBLE HCV NS5B POLYMERASE INHIBITOR. JRNL REF BIOORG.MED.CHEM.LETT. V. 23 6585 2013 JRNL REFN ISSN 0960-894X JRNL PMID 24252545 JRNL DOI 10.1016/J.BMCL.2013.10.060 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 159667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8018 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 11021 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2174 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10444 REMARK 3 BIN R VALUE (WORKING SET) : 0.2154 REMARK 3 BIN FREE R VALUE : 0.2555 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.24 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 577 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 1656 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.56660 REMARK 3 B22 (A**2) : -2.48530 REMARK 3 B33 (A**2) : 5.05190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.179 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.086 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 9172 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12487 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3159 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 197 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1481 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 9172 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1218 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 12588 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.14 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-13. REMARK 100 THE RCSB ID CODE IS RCSB082547. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 159667 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER 2.11.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.0 %W/V PEG 3350 100.0 MM SODIUM REMARK 280 CITRATE, PH 5.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.99300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.30100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.29800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.30100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.99300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.29800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 GLU A 571 REMARK 465 ASN A 572 REMARK 465 LEU A 573 REMARK 465 TYR A 574 REMARK 465 PHE A 575 REMARK 465 GLN A 576 REMARK 465 PRO B 149 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 ARG B 566 REMARK 465 ALA B 567 REMARK 465 ARG B 568 REMARK 465 PRO B 569 REMARK 465 ARG B 570 REMARK 465 GLU B 571 REMARK 465 ASN B 572 REMARK 465 LEU B 573 REMARK 465 TYR B 574 REMARK 465 PHE B 575 REMARK 465 GLN B 576 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 806 O HOH B 879 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 101 31.42 -99.87 REMARK 500 LEU A 260 -56.50 -135.48 REMARK 500 SER A 347 60.66 68.77 REMARK 500 ALA A 348 59.16 -151.52 REMARK 500 SER A 367 18.45 57.53 REMARK 500 ILE A 424 -62.93 -103.22 REMARK 500 LEU B 260 -55.88 -129.20 REMARK 500 SER B 347 50.58 70.71 REMARK 500 SER B 367 15.06 56.55 REMARK 500 ILE B 424 -62.16 -99.17 REMARK 500 THR B 532 80.17 79.36 REMARK 500 LEU B 536 92.90 68.60 REMARK 500 ALA B 541 4.92 -69.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL B 372 23.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1306 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1345 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1412 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A1424 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH A1427 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1507 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A1555 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B1326 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH B1369 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH B1395 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B1406 DISTANCE = 5.65 ANGSTROMS REMARK 525 HOH B1432 DISTANCE = 12.25 ANGSTROMS REMARK 525 HOH B1453 DISTANCE = 5.41 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2F3 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2F3 B 601 DBREF 4MZ4 A 1 570 UNP O92972 POLG_HCVJ4 2420 2989 DBREF 4MZ4 B 1 570 UNP O92972 POLG_HCVJ4 2420 2989 SEQADV 4MZ4 GLY A 440 UNP O92972 GLU 2859 CONFLICT SEQADV 4MZ4 ILE A 520 UNP O92972 THR 2939 CONFLICT SEQADV 4MZ4 GLU A 571 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 ASN A 572 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 LEU A 573 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 TYR A 574 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 PHE A 575 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 GLN A 576 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 GLY B 440 UNP O92972 GLU 2859 CONFLICT SEQADV 4MZ4 ILE B 520 UNP O92972 THR 2939 CONFLICT SEQADV 4MZ4 GLU B 571 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 ASN B 572 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 LEU B 573 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 TYR B 574 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 PHE B 575 UNP O92972 EXPRESSION TAG SEQADV 4MZ4 GLN B 576 UNP O92972 EXPRESSION TAG SEQRES 1 A 576 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 A 576 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN PRO LEU SEQRES 3 A 576 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 A 576 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 A 576 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 A 576 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 A 576 LYS ALA LYS LEU LEU SER ILE GLU GLU ALA CYS LYS LEU SEQRES 8 A 576 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 A 576 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 A 576 HIS ILE ARG SER VAL TRP GLU ASP LEU LEU GLU ASP THR SEQRES 11 A 576 GLU THR PRO ILE ASP THR THR ILE MET ALA LYS SER GLU SEQRES 12 A 576 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 A 576 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 A 576 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 A 576 PRO GLN ALA VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 A 576 SER PRO LYS GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 A 576 LYS SER LYS LYS CYS PRO MET GLY PHE SER TYR ASP THR SEQRES 18 A 576 ARG CYS PHE ASP SER THR VAL THR GLU SER ASP ILE ARG SEQRES 19 A 576 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 A 576 GLU ALA ARG GLN ALA ILE ARG SER LEU THR GLU ARG LEU SEQRES 21 A 576 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 A 576 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 A 576 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 A 576 THR ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 A 576 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 A 576 SER ALA GLY THR GLN GLU ASP ALA ALA ALA LEU ARG ALA SEQRES 27 A 576 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 A 576 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 A 576 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 A 576 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 A 576 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 A 576 PRO ILE ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 A 576 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 A 576 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLY LYS ALA SEQRES 35 A 576 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 A 576 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 A 576 LEU SER ALA PHE THR LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 A 576 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 A 576 PRO PRO LEU ARG THR TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 A 576 ARG ALA LYS LEU LEU SER GLN GLY GLY ARG ALA ALA ILE SEQRES 41 A 576 CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL ARG THR LYS SEQRES 42 A 576 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 A 576 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 A 576 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG GLU ASN SEQRES 45 A 576 LEU TYR PHE GLN SEQRES 1 B 576 SER MET SER TYR THR TRP THR GLY ALA LEU ILE THR PRO SEQRES 2 B 576 CYS ALA ALA GLU GLU SER LYS LEU PRO ILE ASN PRO LEU SEQRES 3 B 576 SER ASN SER LEU LEU ARG HIS HIS ASN MET VAL TYR ALA SEQRES 4 B 576 THR THR SER ARG SER ALA SER LEU ARG GLN LYS LYS VAL SEQRES 5 B 576 THR PHE ASP ARG LEU GLN VAL LEU ASP ASP HIS TYR ARG SEQRES 6 B 576 ASP VAL LEU LYS GLU MET LYS ALA LYS ALA SER THR VAL SEQRES 7 B 576 LYS ALA LYS LEU LEU SER ILE GLU GLU ALA CYS LYS LEU SEQRES 8 B 576 THR PRO PRO HIS SER ALA LYS SER LYS PHE GLY TYR GLY SEQRES 9 B 576 ALA LYS ASP VAL ARG ASN LEU SER SER ARG ALA VAL ASN SEQRES 10 B 576 HIS ILE ARG SER VAL TRP GLU ASP LEU LEU GLU ASP THR SEQRES 11 B 576 GLU THR PRO ILE ASP THR THR ILE MET ALA LYS SER GLU SEQRES 12 B 576 VAL PHE CYS VAL GLN PRO GLU LYS GLY GLY ARG LYS PRO SEQRES 13 B 576 ALA ARG LEU ILE VAL PHE PRO ASP LEU GLY VAL ARG VAL SEQRES 14 B 576 CYS GLU LYS MET ALA LEU TYR ASP VAL VAL SER THR LEU SEQRES 15 B 576 PRO GLN ALA VAL MET GLY SER SER TYR GLY PHE GLN TYR SEQRES 16 B 576 SER PRO LYS GLN ARG VAL GLU PHE LEU VAL ASN THR TRP SEQRES 17 B 576 LYS SER LYS LYS CYS PRO MET GLY PHE SER TYR ASP THR SEQRES 18 B 576 ARG CYS PHE ASP SER THR VAL THR GLU SER ASP ILE ARG SEQRES 19 B 576 VAL GLU GLU SER ILE TYR GLN CYS CYS ASP LEU ALA PRO SEQRES 20 B 576 GLU ALA ARG GLN ALA ILE ARG SER LEU THR GLU ARG LEU SEQRES 21 B 576 TYR ILE GLY GLY PRO LEU THR ASN SER LYS GLY GLN ASN SEQRES 22 B 576 CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU THR SEQRES 23 B 576 THR SER CYS GLY ASN THR LEU THR CYS TYR LEU LYS ALA SEQRES 24 B 576 THR ALA ALA CYS ARG ALA ALA LYS LEU GLN ASP CYS THR SEQRES 25 B 576 MET LEU VAL ASN GLY ASP ASP LEU VAL VAL ILE CYS GLU SEQRES 26 B 576 SER ALA GLY THR GLN GLU ASP ALA ALA ALA LEU ARG ALA SEQRES 27 B 576 PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO GLY SEQRES 28 B 576 ASP PRO PRO GLN PRO GLU TYR ASP LEU GLU LEU ILE THR SEQRES 29 B 576 SER CYS SER SER ASN VAL SER VAL ALA HIS ASP ALA SER SEQRES 30 B 576 GLY LYS ARG VAL TYR TYR LEU THR ARG ASP PRO THR THR SEQRES 31 B 576 PRO LEU ALA ARG ALA ALA TRP GLU THR ALA ARG HIS THR SEQRES 32 B 576 PRO ILE ASN SER TRP LEU GLY ASN ILE ILE MET TYR ALA SEQRES 33 B 576 PRO THR LEU TRP ALA ARG MET ILE LEU MET THR HIS PHE SEQRES 34 B 576 PHE SER ILE LEU LEU ALA GLN GLU GLN LEU GLY LYS ALA SEQRES 35 B 576 LEU ASP CYS GLN ILE TYR GLY ALA CYS TYR SER ILE GLU SEQRES 36 B 576 PRO LEU ASP LEU PRO GLN ILE ILE GLU ARG LEU HIS GLY SEQRES 37 B 576 LEU SER ALA PHE THR LEU HIS SER TYR SER PRO GLY GLU SEQRES 38 B 576 ILE ASN ARG VAL ALA SER CYS LEU ARG LYS LEU GLY VAL SEQRES 39 B 576 PRO PRO LEU ARG THR TRP ARG HIS ARG ALA ARG SER VAL SEQRES 40 B 576 ARG ALA LYS LEU LEU SER GLN GLY GLY ARG ALA ALA ILE SEQRES 41 B 576 CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL ARG THR LYS SEQRES 42 B 576 LEU LYS LEU THR PRO ILE PRO ALA ALA SER GLN LEU ASP SEQRES 43 B 576 LEU SER GLY TRP PHE VAL ALA GLY TYR SER GLY GLY ASP SEQRES 44 B 576 ILE TYR HIS SER LEU SER ARG ALA ARG PRO ARG GLU ASN SEQRES 45 B 576 LEU TYR PHE GLN HET 2F3 A 601 32 HET PO4 A 602 5 HET PO4 A 603 5 HET PO4 A 604 5 HET 2F3 B 601 32 HETNAM 2F3 1-[(2-CHLOROQUINOLIN-3-YL)METHYL]-6-FLUORO-5-METHYL-3- HETNAM 2 2F3 (2-OXO-1,2-DIHYDROPYRIDIN-3-YL)-1H-INDOLE-2-CARBOXYLIC HETNAM 3 2F3 ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 2F3 2(C25 H17 CL F N3 O3) FORMUL 4 PO4 3(O4 P 3-) FORMUL 8 HOH *1656(H2 O) HELIX 1 1 ASN A 24 LEU A 31 1 8 HELIX 2 2 HIS A 33 ASN A 35 5 3 HELIX 3 3 THR A 41 ARG A 43 5 3 HELIX 4 4 SER A 44 THR A 53 1 10 HELIX 5 5 ASP A 61 SER A 76 1 16 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 GLY A 104 ASN A 110 1 7 HELIX 8 8 SER A 112 ASP A 129 1 18 HELIX 9 9 ASP A 164 GLY A 188 1 25 HELIX 10 10 SER A 189 TYR A 195 5 7 HELIX 11 11 SER A 196 LYS A 211 1 16 HELIX 12 12 CYS A 223 VAL A 228 1 6 HELIX 13 13 THR A 229 GLN A 241 1 13 HELIX 14 14 ALA A 246 LEU A 260 1 15 HELIX 15 15 THR A 286 ALA A 306 1 21 HELIX 16 16 GLY A 328 TYR A 346 1 19 HELIX 17 17 ASP A 359 ILE A 363 5 5 HELIX 18 18 PRO A 388 ARG A 401 1 14 HELIX 19 19 ASN A 406 TYR A 415 1 10 HELIX 20 20 THR A 418 ILE A 424 1 7 HELIX 21 21 ILE A 424 GLN A 436 1 13 HELIX 22 22 GLU A 455 LEU A 457 5 3 HELIX 23 23 ASP A 458 GLY A 468 1 11 HELIX 24 24 LEU A 469 THR A 473 5 5 HELIX 25 25 SER A 478 GLY A 493 1 16 HELIX 26 26 PRO A 496 GLY A 515 1 20 HELIX 27 27 GLY A 515 PHE A 526 1 12 HELIX 28 28 ASN A 527 VAL A 530 5 4 HELIX 29 29 ILE A 539 LEU A 545 1 7 HELIX 30 30 HIS B 33 ASN B 35 5 3 HELIX 31 31 THR B 41 ARG B 43 5 3 HELIX 32 32 SER B 44 THR B 53 1 10 HELIX 33 33 ASP B 61 SER B 76 1 16 HELIX 34 34 SER B 84 LEU B 91 1 8 HELIX 35 35 GLY B 104 ASN B 110 1 7 HELIX 36 36 SER B 112 ASP B 129 1 18 HELIX 37 37 ASP B 164 GLY B 188 1 25 HELIX 38 38 SER B 189 TYR B 195 5 7 HELIX 39 39 SER B 196 SER B 210 1 15 HELIX 40 40 CYS B 223 VAL B 228 1 6 HELIX 41 41 THR B 229 GLN B 241 1 13 HELIX 42 42 ALA B 246 LEU B 260 1 15 HELIX 43 43 THR B 286 LYS B 307 1 22 HELIX 44 44 GLY B 328 TYR B 346 1 19 HELIX 45 45 ASP B 359 ILE B 363 5 5 HELIX 46 46 PRO B 388 ARG B 401 1 14 HELIX 47 47 ASN B 406 TYR B 415 1 10 HELIX 48 48 THR B 418 ILE B 424 1 7 HELIX 49 49 ILE B 424 GLU B 437 1 14 HELIX 50 50 GLU B 455 LEU B 457 5 3 HELIX 51 51 ASP B 458 GLY B 468 1 11 HELIX 52 52 LEU B 469 THR B 473 5 5 HELIX 53 53 SER B 478 GLY B 493 1 16 HELIX 54 54 PRO B 496 GLY B 515 1 20 HELIX 55 55 GLY B 515 PHE B 526 1 12 HELIX 56 56 ASN B 527 VAL B 530 5 4 HELIX 57 57 ILE B 539 SER B 543 5 5 SHEET 1 A 5 TYR A 4 TRP A 6 0 SHEET 2 A 5 ASN A 273 ARG A 277 -1 O TYR A 276 N THR A 5 SHEET 3 A 5 GLY A 264 THR A 267 -1 N LEU A 266 O CYS A 274 SHEET 4 A 5 THR A 136 ALA A 140 1 N THR A 136 O THR A 267 SHEET 5 A 5 LEU A 159 PHE A 162 -1 O ILE A 160 N MET A 139 SHEET 1 B 2 VAL A 37 ALA A 39 0 SHEET 2 B 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 C 3 PRO A 214 TYR A 219 0 SHEET 2 C 3 ASP A 319 GLU A 325 -1 O CYS A 324 N MET A 215 SHEET 3 C 3 GLN A 309 ASN A 316 -1 N GLN A 309 O GLU A 325 SHEET 1 D 2 ASN A 369 HIS A 374 0 SHEET 2 D 2 ARG A 380 THR A 385 -1 O VAL A 381 N ALA A 373 SHEET 1 E 2 LEU A 443 ILE A 447 0 SHEET 2 E 2 ALA A 450 ILE A 454 -1 O ILE A 454 N LEU A 443 SHEET 1 F 5 TYR B 4 TRP B 6 0 SHEET 2 F 5 ASN B 273 ARG B 277 -1 O TYR B 276 N THR B 5 SHEET 3 F 5 GLY B 264 THR B 267 -1 N LEU B 266 O CYS B 274 SHEET 4 F 5 THR B 136 ALA B 140 1 N THR B 136 O THR B 267 SHEET 5 F 5 LEU B 159 PHE B 162 -1 O PHE B 162 N THR B 137 SHEET 1 G 2 VAL B 37 ALA B 39 0 SHEET 2 G 2 VAL B 144 CYS B 146 -1 O PHE B 145 N TYR B 38 SHEET 1 H 3 PRO B 214 ASP B 220 0 SHEET 2 H 3 ASP B 319 GLU B 325 -1 O CYS B 324 N MET B 215 SHEET 3 H 3 GLN B 309 ASN B 316 -1 N GLN B 309 O GLU B 325 SHEET 1 I 2 ASN B 369 HIS B 374 0 SHEET 2 I 2 ARG B 380 THR B 385 -1 O TYR B 383 N SER B 371 SHEET 1 J 2 LEU B 443 ILE B 447 0 SHEET 2 J 2 ALA B 450 ILE B 454 -1 O ILE B 454 N LEU B 443 SSBOND 1 CYS A 303 CYS A 311 1555 1555 2.72 LINK SG ACYS A 366 C9 2F3 A 601 1555 1555 1.87 LINK SG BCYS A 366 C9 2F3 A 601 1555 1555 2.07 LINK SG ACYS B 366 C9 2F3 B 601 1555 1555 1.74 LINK SG BCYS B 366 C9 2F3 B 601 1555 1555 1.98 SITE 1 AC1 18 PHE A 193 ARG A 200 ASN A 316 ASP A 318 SITE 2 AC1 18 ASP A 319 CYS A 366 LEU A 384 GLY A 410 SITE 3 AC1 18 ASN A 411 MET A 414 TYR A 415 GLN A 446 SITE 4 AC1 18 ILE A 447 TYR A 448 HOH A 770 HOH A 847 SITE 5 AC1 18 HOH A1060 HOH A1121 SITE 1 AC2 10 ARG A 505 VAL A 530 ARG A 531 THR A 532 SITE 2 AC2 10 HOH A 799 HOH A 844 HOH A 931 HOH A 978 SITE 3 AC2 10 HOH A1133 HOH A1141 SITE 1 AC3 8 PRO A 22 ARG A 401 HOH A 907 HOH A 930 SITE 2 AC3 8 HOH A1193 HOH A1228 HOH A1600 ARG B 114 SITE 1 AC4 9 ARG A 114 HOH A1191 HOH A1295 HOH A1318 SITE 2 AC4 9 HOH A1464 HOH A1494 HOH A1524 GLY B 516 SITE 3 AC4 9 ARG B 517 SITE 1 AC5 18 PHE B 193 ARG B 200 ASN B 316 ASP B 318 SITE 2 AC5 18 ASP B 319 CYS B 366 LEU B 384 GLY B 410 SITE 3 AC5 18 ASN B 411 TYR B 415 GLN B 446 ILE B 447 SITE 4 AC5 18 TYR B 448 HOH B 746 HOH B 841 HOH B 869 SITE 5 AC5 18 HOH B1080 HOH B1195 CRYST1 89.986 106.596 134.602 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007429 0.00000