HEADER GENE REGULATION 30-SEP-13 4MZF TITLE CRYSTAL STRUCTURE OF HUMAN SPINDLIN1 BOUND TO HISTONE H3(K4ME3-R8ME2A) TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE FROM HISTONE H3.2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE H3/M, HISTONE H3/O; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SPINDLIN-1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 50-262; COMPND 10 SYNONYM: SP1, OVARIAN CANCER-RELATED PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: SPIN1, OCR, SPIN; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PRSFDUET KEYWDS WNT SIGNAL, HISTONE H3, NUCLEAR, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR X.SU,X.DING,H.LI REVDAT 1 26-MAR-14 4MZF 0 JRNL AUTH X.SU,G.ZHU,X.DING,S.Y.LEE,Y.DOU,B.ZHU,W.WU,H.LI JRNL TITL MOLECULAR BASIS UNDERLYING HISTONE H3 LYSINE-ARGININE JRNL TITL 2 METHYLATION PATTERN READOUT BY SPIN/SSTY REPEATS OF JRNL TITL 3 SPINDLIN1 JRNL REF GENES DEV. V. 28 622 2014 JRNL REFN ISSN 0890-9369 JRNL PMID 24589551 JRNL DOI 10.1101/GAD.233239.113 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 14987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.7820 - 4.1941 0.98 1953 151 0.2063 0.2827 REMARK 3 2 4.1941 - 3.3301 0.99 1840 164 0.1957 0.2064 REMARK 3 3 3.3301 - 2.9094 0.97 1794 149 0.1928 0.2528 REMARK 3 4 2.9094 - 2.6435 0.94 1734 143 0.2052 0.2679 REMARK 3 5 2.6435 - 2.4541 0.91 1660 144 0.2015 0.2341 REMARK 3 6 2.4541 - 2.3095 0.91 1652 158 0.2013 0.2620 REMARK 3 7 2.3095 - 2.1938 0.90 1633 132 0.2014 0.2895 REMARK 3 8 2.1938 - 2.0984 0.86 1569 111 0.2047 0.2933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1765 REMARK 3 ANGLE : 1.182 2385 REMARK 3 CHIRALITY : 0.080 251 REMARK 3 PLANARITY : 0.004 305 REMARK 3 DIHEDRAL : 15.448 647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4MZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-13. REMARK 100 THE RCSB ID CODE IS RCSB082558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.098 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : 0.59200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 20% PEG 400, 0.1M MGCL2, REMARK 280 0.1M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 60.33950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.65450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.33950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.65450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 461 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 194 REMARK 465 ASP B 195 REMARK 465 SER B 196 REMARK 465 ASN B 197 REMARK 465 ASP B 198 REMARK 465 SER B 199 REMARK 465 PRO B 200 REMARK 465 PRO B 201 REMARK 465 ALA B 202 REMARK 465 GLU B 203 REMARK 465 ARG B 204 REMARK 465 GLU B 205 REMARK 465 PRO B 206 REMARK 465 GLY B 207 REMARK 465 GLU B 208 REMARK 465 VAL B 209 REMARK 465 VAL B 210 REMARK 465 ASP B 211 REMARK 465 LYS B 260 REMARK 465 THR B 261 REMARK 465 SER B 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 125 OH TYR B 185 2565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 123 155.76 -48.56 REMARK 500 VAL B 161 -58.28 71.38 REMARK 500 PRO B 174 42.08 -81.15 REMARK 500 LYS B 239 77.98 -161.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 463 O REMARK 620 2 HOH B 447 O 86.3 REMARK 620 3 HOH B 464 O 93.5 89.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MZG RELATED DB: PDB REMARK 900 RELATED ID: 4MZH RELATED DB: PDB DBREF 4MZF A 1 9 UNP Q71DI3 H32_HUMAN 2 10 DBREF 4MZF B 50 262 UNP Q9Y657 SPIN1_HUMAN 50 262 SEQADV 4MZF GLY B 39 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF SER B 40 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF SER B 41 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF HIS B 42 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF HIS B 43 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF HIS B 44 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF HIS B 45 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF HIS B 46 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF HIS B 47 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF GLY B 48 UNP Q9Y657 EXPRESSION TAG SEQADV 4MZF SER B 49 UNP Q9Y657 EXPRESSION TAG SEQRES 1 A 9 ALA ARG THR M3L GLN THR ALA DA2 LYS SEQRES 1 B 224 GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER ARG ARG SEQRES 2 B 224 ASN ILE VAL GLY CYS ARG ILE GLN HIS GLY TRP LYS GLU SEQRES 3 B 224 GLY ASN GLY PRO VAL THR GLN TRP LYS GLY THR VAL LEU SEQRES 4 B 224 ASP GLN VAL PRO VAL ASN PRO SER LEU TYR LEU ILE LYS SEQRES 5 B 224 TYR ASP GLY PHE ASP CYS VAL TYR GLY LEU GLU LEU ASN SEQRES 6 B 224 LYS ASP GLU ARG VAL SER ALA LEU GLU VAL LEU PRO ASP SEQRES 7 B 224 ARG VAL ALA THR SER ARG ILE SER ASP ALA HIS LEU ALA SEQRES 8 B 224 ASP THR MET ILE GLY LYS ALA VAL GLU HIS MET PHE GLU SEQRES 9 B 224 THR GLU ASP GLY SER LYS ASP GLU TRP ARG GLY MET VAL SEQRES 10 B 224 LEU ALA ARG ALA PRO VAL MET ASN THR TRP PHE TYR ILE SEQRES 11 B 224 THR TYR GLU LYS ASP PRO VAL LEU TYR MET TYR GLN LEU SEQRES 12 B 224 LEU ASP ASP TYR LYS GLU GLY ASP LEU ARG ILE MET PRO SEQRES 13 B 224 ASP SER ASN ASP SER PRO PRO ALA GLU ARG GLU PRO GLY SEQRES 14 B 224 GLU VAL VAL ASP SER LEU VAL GLY LYS GLN VAL GLU TYR SEQRES 15 B 224 ALA LYS GLU ASP GLY SER LYS ARG THR GLY MET VAL ILE SEQRES 16 B 224 HIS GLN VAL GLU ALA LYS PRO SER VAL TYR PHE ILE LYS SEQRES 17 B 224 PHE ASP ASP ASP PHE HIS ILE TYR VAL TYR ASP LEU VAL SEQRES 18 B 224 LYS THR SER MODRES 4MZF M3L A 4 LYS N-TRIMETHYLLYSINE MODRES 4MZF DA2 A 8 ARG NG,NG-DIMETHYL-L-ARGININE HET M3L A 4 12 HET DA2 A 8 13 HET CL B 301 1 HET CL B 302 1 HET MG B 303 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM DA2 NG,NG-DIMETHYL-L-ARGININE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN DA2 ADMA FORMUL 1 M3L C9 H21 N2 O2 1+ FORMUL 1 DA2 C8 H18 N4 O2 FORMUL 3 CL 2(CL 1-) FORMUL 5 MG MG 2+ FORMUL 6 HOH *113(H2 O) HELIX 1 1 ASP B 125 ILE B 133 1 9 HELIX 2 2 GLN B 180 GLU B 187 1 8 SHEET 1 A 5 ARG A 2 THR A 3 0 SHEET 2 A 5 ALA B 136 GLU B 142 1 O GLU B 142 N ARG A 2 SHEET 3 A 5 LYS B 148 ARG B 158 -1 O TRP B 151 N HIS B 139 SHEET 4 A 5 PHE B 166 TYR B 170 -1 O THR B 169 N MET B 154 SHEET 5 A 5 ASP B 173 TYR B 179 -1 O TYR B 177 N ILE B 168 SHEET 1 B 3 ARG A 2 THR A 3 0 SHEET 2 B 3 ALA B 136 GLU B 142 1 O GLU B 142 N ARG A 2 SHEET 3 B 3 LEU B 190 ILE B 192 -1 O ARG B 191 N GLU B 138 SHEET 1 C 2 SER B 40 HIS B 42 0 SHEET 2 C 2 GLY B 48 ARG B 50 -1 O SER B 49 N SER B 41 SHEET 1 D 5 TYR B 98 LEU B 100 0 SHEET 2 D 5 TYR B 87 TYR B 91 -1 N ILE B 89 O TYR B 98 SHEET 3 D 5 VAL B 69 GLN B 79 -1 N LEU B 77 O LEU B 88 SHEET 4 D 5 CYS B 56 LYS B 63 -1 N TRP B 62 O THR B 70 SHEET 5 D 5 VAL B 108 ARG B 117 -1 O GLU B 112 N GLN B 59 SHEET 1 E 4 GLN B 217 ALA B 221 0 SHEET 2 E 4 LYS B 227 GLN B 235 -1 O ARG B 228 N TYR B 220 SHEET 3 E 4 VAL B 242 PHE B 247 -1 O PHE B 244 N ILE B 233 SHEET 4 E 4 TYR B 254 ASP B 257 -1 O TYR B 254 N ILE B 245 LINK C THR A 3 N M3L A 4 1555 1555 1.32 LINK C M3L A 4 N GLN A 5 1555 1555 1.33 LINK C ALA A 7 N DA2 A 8 1555 1555 1.33 LINK C DA2 A 8 N LYS A 9 1555 1555 1.33 LINK MG MG B 303 O HOH B 463 1555 1555 2.06 LINK MG MG B 303 O HOH B 447 1555 1555 2.14 LINK MG MG B 303 O HOH B 464 1555 1555 2.16 CISPEP 1 HIS B 43 HIS B 44 0 -11.59 SITE 1 AC1 2 ARG B 152 LYS B 172 SITE 1 AC2 3 HIS B 234 GLU B 237 HOH B 413 SITE 1 AC3 3 HOH B 447 HOH B 463 HOH B 464 CRYST1 120.679 43.309 50.150 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019940 0.00000