HEADER TRANSFERASE 30-SEP-13 4MZY TITLE CRYSTAL STRUCTURE OF ENTEROCOCCUS FAECALIS NICOTINATE TITLE 2 PHOSPHORIBOSYLTRANSFERASE WITH MALONATE AND PHOSPHATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINATE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 GENE: EF2626; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRANSFERASE, STRUCTURAL GENOMICS, PSI, ROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, NEW KEYWDS 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, PROTEIN KEYWDS 4 STRUCTURE INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,S.R.WASSERMAN,S.C.ALMO,S.K.BURLEY,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC),NEW YORK AUTHOR 3 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 5 20-SEP-23 4MZY 1 REMARK REVDAT 4 10-FEB-21 4MZY 1 AUTHOR JRNL REMARK REVDAT 3 29-APR-15 4MZY 1 HETSYN REVDAT 2 27-NOV-13 4MZY 1 KEYWDS REVDAT 1 23-OCT-13 4MZY 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,S.R.WASSERMAN,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ENTEROCOCCUS FAECALIS NICOTINATE JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 43356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3913 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : 2.71000 REMARK 3 B33 (A**2) : -2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4152 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3917 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5609 ; 1.317 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9028 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 5.708 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;35.778 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;14.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.321 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4663 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 953 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4MZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : 0.66900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2F7F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, 10% GLYCEROL, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.62700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.69050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.30200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.62700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.69050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.30200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.62700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.69050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.30200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.62700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.69050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.30200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -194.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.25400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.38100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 764 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 ASN A 491 REMARK 465 LYS A 492 REMARK 465 GLU A 493 REMARK 465 ALA A 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 3 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 167 175.61 76.54 REMARK 500 THR A 202 -82.89 -108.16 REMARK 500 ASN A 293 93.27 115.10 REMARK 500 LYS A 309 52.99 -100.42 REMARK 500 GLN A 325 86.51 -155.73 REMARK 500 VAL A 400 -60.46 -94.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 522 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F7F RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEX WITH NICOTINIC ACID AND DIPHOSPHATE REMARK 900 RELATED ID: NYSGXRC-6261B RELATED DB: TARGETTRACK DBREF 4MZY A 1 494 UNP Q830Y8 Q830Y8_ENTFA 1 494 SEQADV 4MZY HIS A 448 UNP Q830Y8 TRP 448 ENGINEERED MUTATION SEQRES 1 A 494 MET ASP TYR THR TYR ALA ASP ASP SER LEU THR LEU HIS SEQRES 2 A 494 THR ASP MET TYR GLN ILE ASN MET MET GLN THR TYR TRP SEQRES 3 A 494 GLU LEU GLY ARG ALA ASP LEU HIS ALA VAL PHE GLU CYS SEQRES 4 A 494 TYR PHE ARG GLU MET PRO PHE ASN HIS GLY TYR ALA ILE SEQRES 5 A 494 PHE ALA GLY LEU GLU ARG LEU VAL ASN TYR LEU GLU ASN SEQRES 6 A 494 LEU THR PHE THR GLU SER ASP ILE ALA TYR LEU ARG GLU SEQRES 7 A 494 VAL GLU GLU TYR PRO GLU ASP PHE LEU THR TYR LEU ALA SEQRES 8 A 494 ASN PHE GLU PHE LYS CYS THR VAL ARG SER ALA LEU GLU SEQRES 9 A 494 GLY ASP LEU VAL PHE ASN ASN GLU PRO LEU ILE GLN ILE SEQRES 10 A 494 GLU GLY PRO LEU ALA GLN CYS GLN LEU VAL GLU THR ALA SEQRES 11 A 494 LEU LEU ASN MET VAL ASN PHE GLN THR LEU ILE ALA THR SEQRES 12 A 494 LYS ALA ALA ARG ILE LYS SER VAL ILE GLY ASP ASP PRO SEQRES 13 A 494 LEU LEU GLU PHE GLY THR ARG ARG ALA GLN GLU LEU ASP SEQRES 14 A 494 ALA ALA ILE TRP GLY THR ARG ALA ALA TYR ILE GLY GLY SEQRES 15 A 494 ALA ASP ALA THR SER ASN VAL ARG ALA GLY LYS ILE PHE SEQRES 16 A 494 GLY ILE PRO VAL SER GLY THR HIS ALA HIS SER LEU VAL SEQRES 17 A 494 GLN SER TYR GLY ASN ASP TYR GLU ALA PHE MET ALA TYR SEQRES 18 A 494 ALA LYS THR HIS ARG ASP CYS VAL PHE LEU VAL ASP THR SEQRES 19 A 494 TYR ASP THR LEU LYS ALA GLY VAL PRO SER ALA ILE ARG SEQRES 20 A 494 VAL ALA ARG GLU MET GLY ASP LYS ILE ASN PHE LEU GLY SEQRES 21 A 494 VAL ARG ILE ASP SER GLY ASP MET ALA TYR ILE SER LYS SEQRES 22 A 494 ARG VAL ARG GLU GLN LEU ASP GLU ALA GLY PHE THR GLU SEQRES 23 A 494 ALA LYS ILE TYR ALA SER ASN ASP LEU ASP GLU ASN THR SEQRES 24 A 494 ILE LEU ASN LEU LYS MET GLN LYS SER LYS ILE ASP VAL SEQRES 25 A 494 TRP GLY VAL GLY THR LYS LEU ILE THR ALA TYR ASP GLN SEQRES 26 A 494 PRO ALA LEU GLY ALA VAL PHE LYS LEU VAL SER ILE GLU SEQRES 27 A 494 GLY GLU ASP GLY GLN MET LYS ASP THR ILE LYS LEU SER SEQRES 28 A 494 SER ASN ALA GLU LYS VAL THR THR PRO GLY LYS LYS GLN SEQRES 29 A 494 VAL TRP ARG ILE THR ARG LYS SER ASP LYS LYS SER GLU SEQRES 30 A 494 GLY ASP TYR VAL THR LEU TRP ASN GLU ASP PRO ARG GLN SEQRES 31 A 494 GLU GLU GLU ILE TYR MET PHE HIS PRO VAL HIS THR PHE SEQRES 32 A 494 ILE ASN LYS TYR VAL ARG ASP PHE GLU ALA ARG PRO VAL SEQRES 33 A 494 LEU GLN ASP ILE PHE VAL GLU GLY LYS ARG VAL TYR GLU SEQRES 34 A 494 LEU PRO THR LEU ASP GLU ILE LYS GLN TYR ALA LYS GLU SEQRES 35 A 494 ASN LEU ASP SER LEU HIS GLU GLU TYR LYS ARG ASP LEU SEQRES 36 A 494 ASN PRO GLN LYS TYR PRO VAL ASP LEU SER THR ASP CYS SEQRES 37 A 494 TRP ASN HIS LYS MET ASN LEU LEU GLU LYS VAL ARG LYS SEQRES 38 A 494 ASP VAL LYS HIS LEU THR GLU THR VAL ASN LYS GLU ALA HET PO4 A 501 5 HET PO4 A 502 5 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET MLA A 515 7 HET MLA A 516 7 HET MLA A 517 7 HET CL A 518 1 HET CL A 519 1 HET FMT A 520 3 HET CL A 521 1 HET CL A 522 1 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM MLA MALONIC ACID HETNAM CL CHLORIDE ION HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 GOL 12(C3 H8 O3) FORMUL 16 MLA 3(C3 H4 O4) FORMUL 19 CL 4(CL 1-) FORMUL 21 FMT C H2 O2 FORMUL 24 HOH *170(H2 O) HELIX 1 1 ASP A 15 LEU A 28 1 14 HELIX 2 2 MET A 44 HIS A 48 5 5 HELIX 3 3 GLY A 55 ASN A 65 1 11 HELIX 4 4 THR A 69 VAL A 79 1 11 HELIX 5 5 PRO A 83 ASN A 92 1 10 HELIX 6 6 LEU A 121 GLY A 153 1 33 HELIX 7 7 GLY A 161 ALA A 165 5 5 HELIX 8 8 GLN A 166 GLY A 182 1 17 HELIX 9 9 ASN A 188 GLY A 196 1 9 HELIX 10 10 ALA A 204 GLY A 212 1 9 HELIX 11 11 ASN A 213 HIS A 225 1 13 HELIX 12 12 ALA A 240 GLY A 253 1 14 HELIX 13 13 ASP A 254 ILE A 256 5 3 HELIX 14 14 ASP A 267 ALA A 282 1 16 HELIX 15 15 ASP A 296 GLN A 306 1 11 HELIX 16 16 GLY A 316 THR A 321 1 6 HELIX 17 17 ASP A 387 GLU A 391 5 5 HELIX 18 18 THR A 432 LEU A 447 1 16 HELIX 19 19 HIS A 448 ARG A 453 1 6 HELIX 20 20 SER A 465 GLU A 488 1 24 SHEET 1 A 7 MET A 344 ASP A 346 0 SHEET 2 A 7 VAL A 331 GLU A 338 -1 N ILE A 337 O LYS A 345 SHEET 3 A 7 HIS A 34 TYR A 40 -1 N VAL A 36 O VAL A 335 SHEET 4 A 7 ILE A 115 PRO A 120 -1 O ILE A 117 N PHE A 37 SHEET 5 A 7 THR A 98 SER A 101 -1 N THR A 98 O GLU A 118 SHEET 6 A 7 GLN A 418 VAL A 422 -1 O ILE A 420 N VAL A 99 SHEET 7 A 7 LYS A 425 ARG A 426 -1 O LYS A 425 N VAL A 422 SHEET 1 B 2 ALA A 51 ILE A 52 0 SHEET 2 B 2 LEU A 107 VAL A 108 -1 O VAL A 108 N ALA A 51 SHEET 1 C 6 ALA A 185 THR A 186 0 SHEET 2 C 6 LEU A 157 GLU A 159 1 N GLU A 159 O ALA A 185 SHEET 3 C 6 VAL A 312 VAL A 315 1 O TRP A 313 N LEU A 158 SHEET 4 C 6 LYS A 288 ALA A 291 1 N ALA A 291 O GLY A 314 SHEET 5 C 6 ASN A 257 ILE A 263 1 N VAL A 261 O TYR A 290 SHEET 6 C 6 ASP A 227 LEU A 231 1 N CYS A 228 O ASN A 257 SHEET 1 D 4 PHE A 411 PRO A 415 0 SHEET 2 D 4 LYS A 363 ARG A 370 -1 N THR A 369 O GLU A 412 SHEET 3 D 4 SER A 376 LEU A 383 -1 O GLY A 378 N ILE A 368 SHEET 4 D 4 VAL A 462 LEU A 464 1 O ASP A 463 N VAL A 381 SHEET 1 E 2 GLU A 393 PHE A 397 0 SHEET 2 E 2 ASN A 405 ARG A 409 -1 O VAL A 408 N ILE A 394 SITE 1 AC1 5 HIS A 225 ARG A 226 ASP A 227 HOH A 725 SITE 2 AC1 5 HOH A 726 SITE 1 AC2 9 PHE A 160 ASN A 293 ASP A 294 GLY A 316 SITE 2 AC2 9 THR A 317 HOH A 630 HOH A 654 HOH A 722 SITE 3 AC2 9 HOH A 723 SITE 1 AC3 7 TYR A 179 ILE A 180 GLY A 181 GLY A 182 SITE 2 AC3 7 LYS A 437 LEU A 444 HOH A 685 SITE 1 AC4 5 GLU A 104 TYR A 428 PRO A 431 TYR A 439 SITE 2 AC4 5 HOH A 666 SITE 1 AC5 6 MET A 396 HIS A 398 LYS A 406 PRO A 461 SITE 2 AC5 6 ASP A 463 GOL A 513 SITE 1 AC6 4 SER A 150 ARG A 453 ASP A 454 LEU A 455 SITE 1 AC7 4 ASP A 236 LEU A 238 LYS A 239 HOH A 658 SITE 1 AC8 6 ASP A 85 GLN A 364 TRP A 384 GLU A 386 SITE 2 AC8 6 ASP A 387 ARG A 389 SITE 1 AC9 5 GLY A 212 ASN A 213 LEU A 486 HOH A 631 SITE 2 AC9 5 HOH A 758 SITE 1 BC1 3 LYS A 149 ASP A 154 ASP A 184 SITE 1 BC2 7 ASP A 7 GLU A 57 ASN A 61 ILE A 194 SITE 2 BC2 7 MLA A 516 HOH A 690 HOH A 732 SITE 1 BC3 6 LEU A 63 GLU A 64 LEU A 66 GLU A 94 SITE 2 BC3 6 PHE A 95 LYS A 255 SITE 1 BC4 10 TYR A 270 HIS A 398 LYS A 459 TYR A 460 SITE 2 BC4 10 PRO A 461 VAL A 462 ASP A 463 GOL A 505 SITE 3 BC4 10 HOH A 673 HOH A 701 SITE 1 BC5 3 ASP A 155 ILE A 310 ASP A 311 SITE 1 BC6 9 GLN A 125 GLU A 128 ALA A 204 HIS A 205 SITE 2 BC6 9 SER A 206 LYS A 333 FMT A 520 HOH A 626 SITE 3 BC6 9 HOH A 721 SITE 1 BC7 7 ASP A 7 ARG A 58 ASP A 169 TRP A 173 SITE 2 BC7 7 ARG A 190 GOL A 511 HOH A 759 SITE 1 BC8 8 GLU A 38 TYR A 40 PRO A 113 THR A 359 SITE 2 BC8 8 LYS A 363 HOH A 714 HOH A 730 HOH A 761 SITE 1 BC9 4 ARG A 163 ARG A 164 VAL A 331 PHE A 332 SITE 1 CC1 1 ARG A 274 SITE 1 CC2 3 PHE A 160 ARG A 262 MLA A 515 SITE 1 CC3 4 THR A 202 HOH A 638 HOH A 768 HOH A 769 SITE 1 CC4 4 SER A 200 GLY A 201 HOH A 767 HOH A 768 CRYST1 71.254 111.381 154.604 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014034 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006468 0.00000