HEADER LIGASE 02-OCT-13 4N0H TITLE CRYSTAL STRUCTURE OF S. CEREVISIAE MITOCHONDRIAL GATFAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GLU-ADT SUBUNIT A, HMG2-INDUCED ER-REMODELING PROTEIN 2, COMPND 6 LOSS OF RESPIRATORY CAPACITY PROTEIN 6; COMPND 7 EC: 6.3.5.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B, COMPND 11 MITOCHONDRIAL; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 16-329; COMPND 14 SYNONYM: GLU-ADT SUBUNIT B, CYTOCHROME C OXIDASE ASSEMBLY FACTOR COMPND 15 PET112; COMPND 16 EC: 6.3.5.-; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT F, COMPND 20 MITOCHONDRIAL; COMPND 21 CHAIN: F; COMPND 22 FRAGMENT: UNP RESIDUES 24-183; COMPND 23 SYNONYM: GLU-ADT SUBUNIT F; COMPND 24 EC: 6.3.5.-; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: GATA, GEP6, HER2, LRC6, YMR293C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR2 CODONPLUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PCGFP-BC; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: GATB, PET112, YBL0724, YBL080C; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR2 CODONPLUS; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PCGFP-BC; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 25 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 26 ORGANISM_TAXID: 559292; SOURCE 27 STRAIN: ATCC 204508 / S288C; SOURCE 28 GENE: GATF, GTF1, YGR102C; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) STAR2 CODONPLUS; SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PCGFP-BC KEYWDS AMIDOTRANSFERASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ARAISO,R.ISHITANI,O.NUREKI REVDAT 4 03-APR-24 4N0H 1 REMARK REVDAT 3 20-MAR-24 4N0H 1 REMARK SEQADV REVDAT 2 17-DEC-14 4N0H 1 JRNL REVDAT 1 16-APR-14 4N0H 0 JRNL AUTH Y.ARAISO,J.L.HUOT,T.SEKIGUCHI,M.FRECHIN,F.FISCHER,L.ENKLER, JRNL AUTH 2 B.SENGER,R.ISHITANI,H.D.BECKER,O.NUREKI JRNL TITL CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE MITOCHONDRIAL JRNL TITL 2 GATFAB REVEALS A NOVEL SUBUNIT ASSEMBLY IN TRNA-DEPENDENT JRNL TITL 3 AMIDOTRANSFERASES JRNL REF NUCLEIC ACIDS RES. V. 42 6052 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24692665 JRNL DOI 10.1093/NAR/GKU234 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 74447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5798 - 5.8426 0.90 2597 137 0.2048 0.2146 REMARK 3 2 5.8426 - 4.6427 0.99 2726 144 0.1645 0.2006 REMARK 3 3 4.6427 - 4.0573 0.99 2672 140 0.1496 0.1650 REMARK 3 4 4.0573 - 3.6870 1.00 2677 141 0.1564 0.2082 REMARK 3 5 3.6870 - 3.4231 1.00 2669 141 0.1713 0.1979 REMARK 3 6 3.4231 - 3.2216 1.00 2661 139 0.1776 0.2051 REMARK 3 7 3.2216 - 3.0604 1.00 2682 142 0.1829 0.2083 REMARK 3 8 3.0604 - 2.9273 0.99 2630 138 0.1878 0.2327 REMARK 3 9 2.9273 - 2.8147 0.99 2626 138 0.1981 0.2413 REMARK 3 10 2.8147 - 2.7176 0.99 2622 138 0.1975 0.2378 REMARK 3 11 2.7176 - 2.6327 0.99 2618 138 0.1996 0.2399 REMARK 3 12 2.6327 - 2.5574 0.99 2604 138 0.1996 0.2319 REMARK 3 13 2.5574 - 2.4902 0.99 2604 137 0.1990 0.2465 REMARK 3 14 2.4902 - 2.4294 0.99 2593 136 0.1898 0.2317 REMARK 3 15 2.4294 - 2.3742 0.99 2614 138 0.1811 0.2086 REMARK 3 16 2.3742 - 2.3237 0.99 2589 136 0.1825 0.2471 REMARK 3 17 2.3237 - 2.2772 0.99 2577 135 0.1923 0.2368 REMARK 3 18 2.2772 - 2.2343 0.99 2612 138 0.1910 0.2429 REMARK 3 19 2.2343 - 2.1944 0.99 2617 138 0.1996 0.2374 REMARK 3 20 2.1944 - 2.1572 0.99 2566 135 0.2011 0.2147 REMARK 3 21 2.1572 - 2.1224 0.99 2627 138 0.2090 0.2318 REMARK 3 22 2.1224 - 2.0898 1.00 2599 137 0.2274 0.2526 REMARK 3 23 2.0898 - 2.0590 1.00 2600 136 0.2505 0.3216 REMARK 3 24 2.0590 - 2.0300 0.99 2625 139 0.2564 0.2815 REMARK 3 25 2.0300 - 2.0026 0.99 2580 136 0.2666 0.3045 REMARK 3 26 2.0026 - 1.9766 0.99 2622 138 0.2842 0.3328 REMARK 3 27 1.9766 - 1.9520 0.97 2515 132 0.2715 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 61.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16410 REMARK 3 B22 (A**2) : 0.19800 REMARK 3 B33 (A**2) : -0.36200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6733 REMARK 3 ANGLE : 0.892 9138 REMARK 3 CHIRALITY : 0.061 1059 REMARK 3 PLANARITY : 0.004 1174 REMARK 3 DIHEDRAL : 13.930 2485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 14.2502 -0.6047 -10.6036 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.1479 REMARK 3 T33: 0.1533 T12: 0.0087 REMARK 3 T13: 0.0460 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.7915 L22: 1.1506 REMARK 3 L33: 1.2857 L12: -0.1816 REMARK 3 L13: -0.3760 L23: 0.6406 REMARK 3 S TENSOR REMARK 3 S11: -0.1616 S12: -0.0792 S13: -0.1058 REMARK 3 S21: 0.1502 S22: 0.0116 S23: 0.1117 REMARK 3 S31: 0.2361 S32: 0.0149 S33: -0.0687 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 19.3118 -6.4371 -51.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.4319 T22: 0.2777 REMARK 3 T33: 0.2207 T12: -0.0099 REMARK 3 T13: 0.0051 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 0.6048 L22: 1.1285 REMARK 3 L33: 0.8900 L12: 0.0627 REMARK 3 L13: -0.2216 L23: 0.1890 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.2221 S13: -0.0420 REMARK 3 S21: -0.5090 S22: -0.0666 S23: 0.1626 REMARK 3 S31: 0.0470 S32: -0.1275 S33: -0.0104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'F' REMARK 3 ORIGIN FOR THE GROUP (A): 8.8737 -1.0259 -23.4787 REMARK 3 T TENSOR REMARK 3 T11: -0.0180 T22: 0.2404 REMARK 3 T33: 0.3766 T12: -0.1059 REMARK 3 T13: 0.0136 T23: -0.1683 REMARK 3 L TENSOR REMARK 3 L11: -0.0619 L22: 0.7158 REMARK 3 L33: 1.1656 L12: -0.5213 REMARK 3 L13: -0.2807 L23: 0.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: -0.0057 S13: -0.1374 REMARK 3 S21: -0.0372 S22: -0.1520 S23: 0.2580 REMARK 3 S31: 0.1174 S32: -0.1754 S33: -0.1427 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SEM-LABELED YEAST GATFAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM MALONATE, 200MM MG(NO3)2, REMARK 280 10% PEG3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.97450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.61650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.14850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.61650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.97450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.14850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 ILE A 34 REMARK 465 THR A 35 REMARK 465 ASN A 36 REMARK 465 LYS A 37 REMARK 465 LYS A 38 REMARK 465 GLY A 39 REMARK 465 THR A 40 REMARK 465 LYS A 41 REMARK 465 PRO A 411 REMARK 465 ALA A 412 REMARK 465 ASN A 413 REMARK 465 SER A 414 REMARK 465 TYR A 415 REMARK 465 ILE B 16 REMARK 465 HIS B 17 REMARK 465 SER B 18 REMARK 465 HIS B 19 REMARK 465 GLY B 20 REMARK 465 ALA B 21 REMARK 465 PRO B 22 REMARK 465 PHE B 23 REMARK 465 ARG B 24 REMARK 465 PRO B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 166 REMARK 465 THR B 167 REMARK 465 ASP B 168 REMARK 465 LYS B 169 REMARK 465 ASP B 170 REMARK 465 ILE B 265 REMARK 465 SER B 266 REMARK 465 VAL B 267 REMARK 465 GLY B 268 REMARK 465 ASP B 269 REMARK 465 ARG B 290 REMARK 465 SER B 291 REMARK 465 LYS B 292 REMARK 465 GLU B 293 REMARK 465 THR B 294 REMARK 465 THR B 295 REMARK 465 ASP B 328 REMARK 465 ASP B 329 REMARK 465 LEU B 330 REMARK 465 GLU B 331 REMARK 465 SER B 332 REMARK 465 SER B 333 REMARK 465 GLY B 334 REMARK 465 GLU B 335 REMARK 465 ASN B 336 REMARK 465 LEU B 337 REMARK 465 TYR B 338 REMARK 465 PHE B 339 REMARK 465 GLN B 340 REMARK 465 PHE F 24 REMARK 465 VAL F 25 REMARK 465 SER F 26 REMARK 465 THR F 27 REMARK 465 GLY F 28 REMARK 465 ILE F 59 REMARK 465 ASN F 60 REMARK 465 THR F 61 REMARK 465 LYS F 62 REMARK 465 GLU F 63 REMARK 465 GLU F 64 REMARK 465 LYS F 65 REMARK 465 LEU F 66 REMARK 465 GLY F 114 REMARK 465 GLU F 115 REMARK 465 LYS F 116 REMARK 465 HIS F 117 REMARK 465 THR F 118 REMARK 465 LYS F 119 REMARK 465 GLU F 120 REMARK 465 TYR F 121 REMARK 465 ASP F 122 REMARK 465 ALA F 123 REMARK 465 ARG F 124 REMARK 465 LEU F 125 REMARK 465 VAL F 126 REMARK 465 GLN F 127 REMARK 465 ARG F 128 REMARK 465 GLY F 177 REMARK 465 LEU F 178 REMARK 465 LEU F 179 REMARK 465 LYS F 180 REMARK 465 ASN F 181 REMARK 465 ARG F 182 REMARK 465 LYS F 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 LYS A 379 CG CD CE NZ REMARK 470 ARG A 401 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 SER A 410 OG REMARK 470 TYR B 27 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ASP B 140 CG OD1 OD2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 ASP B 195 CG OD1 OD2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 ILE B 233 CG1 CG2 CD1 REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 ARG B 238 CD NE CZ NH1 NH2 REMARK 470 GLN B 259 CG CD OE1 NE2 REMARK 470 GLU B 263 CG CD OE1 OE2 REMARK 470 LEU B 264 CG CD1 CD2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 ARG B 279 CG CD NE CZ NH1 NH2 REMARK 470 SER B 284 OG REMARK 470 SER B 285 OG REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 LYS F 31 CG CD CE NZ REMARK 470 LYS F 34 CD CE NZ REMARK 470 HIS F 54 CG ND1 CD2 CE1 NE2 REMARK 470 GLU F 72 CG CD OE1 OE2 REMARK 470 GLU F 113 CG CD OE1 OE2 REMARK 470 ASN F 129 CG OD1 ND2 REMARK 470 GLU F 176 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 355 O HOH A 721 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 322 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 182 -73.32 -111.87 REMARK 500 ASP A 301 -3.60 -147.48 REMARK 500 ASN A 349 -74.62 -100.56 REMARK 500 ASP A 452 43.02 -91.49 REMARK 500 ASN B 40 50.51 -98.36 REMARK 500 HIS B 63 58.87 -92.81 REMARK 500 PRO F 49 86.44 -69.74 REMARK 500 ASN F 169 -115.49 52.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N0I RELATED DB: PDB DBREF 4N0H A 1 464 UNP Q03557 GATA_YEAST 1 464 DBREF 4N0H B 16 329 UNP P33893 GATB_YEAST 16 329 DBREF 4N0H F 24 183 UNP P53260 GATF_YEAST 24 183 SEQADV 4N0H LEU B 330 UNP P33893 EXPRESSION TAG SEQADV 4N0H GLU B 331 UNP P33893 EXPRESSION TAG SEQADV 4N0H SER B 332 UNP P33893 EXPRESSION TAG SEQADV 4N0H SER B 333 UNP P33893 EXPRESSION TAG SEQADV 4N0H GLY B 334 UNP P33893 EXPRESSION TAG SEQADV 4N0H GLU B 335 UNP P33893 EXPRESSION TAG SEQADV 4N0H ASN B 336 UNP P33893 EXPRESSION TAG SEQADV 4N0H LEU B 337 UNP P33893 EXPRESSION TAG SEQADV 4N0H TYR B 338 UNP P33893 EXPRESSION TAG SEQADV 4N0H PHE B 339 UNP P33893 EXPRESSION TAG SEQADV 4N0H GLN B 340 UNP P33893 EXPRESSION TAG SEQRES 1 A 464 MET PRO LEU LYS ARG SER LEU LYS GLU SER ILE GLU ARG SEQRES 2 A 464 LEU SER SER PHE GLN SER LYS TYR ASN ILE PHE THR SER SEQRES 3 A 464 ILE ASN PRO SER PRO TYR SER ILE THR ASN LYS LYS GLY SEQRES 4 A 464 THR LYS GLU THR LEU THR GLY CYS VAL ALA SER ILE LYS SEQRES 5 A 464 ASP ASN ILE VAL THR LYS ASP PHE PRO THR THR CYS ALA SEQRES 6 A 464 SER HIS ILE LEU GLU ASN PHE LYS SER PRO PHE ASP ALA SEQRES 7 A 464 THR VAL VAL LYS LEU LEU LYS GLN ALA GLY VAL HIS ILE SEQRES 8 A 464 LEU GLY LYS THR ASN LEU ASP GLU PHE GLY MET GLY SER SEQRES 9 A 464 GLY GLY VAL HIS SER ILE ARG GLY PRO VAL ILE ASN PRO SEQRES 10 A 464 LEU TYR PRO HIS GLU ASP LYS LYS ILE MET GLY GLY SER SEQRES 11 A 464 SER SER GLY ALA ALA ALA SER VAL ALA CYS ASP LEU VAL SEQRES 12 A 464 ASP PHE ALA LEU GLY THR ASP THR GLY GLY SER VAL ARG SEQRES 13 A 464 LEU PRO ALA CYS TYR GLY SER VAL LEU GLY PHE LYS PRO SEQRES 14 A 464 SER TYR GLY ARG LEU SER ARG PHE GLY VAL ILE ALA TYR SEQRES 15 A 464 SER GLN SER LEU ASP THR VAL GLY ILE LEU SER LYS LYS SEQRES 16 A 464 ILE ASN VAL LEU ARG LYS VAL PHE HIS THR LEU ASP LYS SEQRES 17 A 464 TYR ASP MET LYS ASP PRO THR SER LEU SER VAL GLU LEU SEQRES 18 A 464 ARG GLU LEU ILE GLU GLY ASN LYS LYS VAL ARG ARG PRO SEQRES 19 A 464 LEU LYS VAL GLY ILE VAL LYS GLU PHE SER HIS GLU SER SEQRES 20 A 464 MET PRO ILE GLY PHE HIS ARG LEU TYR LEU SER LEU LEU SEQRES 21 A 464 GLU LYS LEU ILE ASN LEU GLY LEU GLU ILE TYR PRO VAL SEQRES 22 A 464 SER ILE PRO SER VAL LYS ASN CYS LEU PRO ILE TYR TYR SEQRES 23 A 464 THR LEU SER PRO ALA GLU ALA ALA SER ASN LEU SER ARG SEQRES 24 A 464 TYR ASP GLY ILE ARG TYR GLY TYR ARG ASP SER GLU LEU SEQRES 25 A 464 ASP ILE LYS ASP GLY ILE LEU PHE ALA PRO THR ARG SER SEQRES 26 A 464 LYS PHE GLY THR GLU VAL LYS ASN ARG ILE ILE LEU GLY SEQRES 27 A 464 ASN TYR ASN LEU CYS SER ASP ALA PHE LYS ASN ASN PHE SEQRES 28 A 464 ILE LYS ALA GLU LYS LEU ARG VAL ASN LEU ILE ASP GLU SEQRES 29 A 464 PHE ASP GLY ILE PHE ARG PHE PRO ASN VAL LEU THR ASN SEQRES 30 A 464 SER LYS GLY ASN PRO ASP GLY LEU ASP LEU LEU ILE VAL SEQRES 31 A 464 PRO THR SER SER LYS LEU PRO GLY SER ILE ARG ASP PHE SEQRES 32 A 464 GLU GLU GLU GLU ALA LYS SER PRO ALA ASN SER TYR ILE SEQRES 33 A 464 ASN ASP VAL PHE THR VAL PRO MET SER LEU ALA GLY LEU SEQRES 34 A 464 PRO SER LEU SER MET PRO LEU LYS GLU LYS THR PRO ILE SEQRES 35 A 464 GLY LEU GLN VAL VAL GLY GLN TYR GLY ASP ASP SER THR SEQRES 36 A 464 VAL LEU ASP PHE VAL GLU SER ILE SER SEQRES 1 B 325 ILE HIS SER HIS GLY ALA PRO PHE ARG PRO GLU TYR ALA SEQRES 2 B 325 LEU LYS CYS GLY LEU GLU ILE HIS THR GLN LEU ASN THR SEQRES 3 B 325 LYS ASN LYS LEU PHE SER GLN SER THR ASN SER ALA THR SEQRES 4 B 325 SER LEU VAL ASP ALA PRO ASN HIS HIS THR SER TYR TYR SEQRES 5 B 325 ASP ILE ALA LEU PRO GLY THR GLN PRO VAL LEU ASN LEU SEQRES 6 B 325 GLU ALA ILE LEU PHE ALA MET LYS LEU SER LEU ALA LEU SEQRES 7 B 325 GLY SER GLN VAL ASN SER ILE SER GLN PHE ASP ARG LYS SEQRES 8 B 325 HIS TYR PHE TYR GLY ASP GLN PRO GLN GLY TYR GLN LEU SEQRES 9 B 325 THR GLN HIS TYR ARG PRO PHE ALA ARG GLY GLY LYS ILE SEQRES 10 B 325 ASN LEU SER LYS GLU LEU ASP ASP ILE ASP GLU SER ALA SEQRES 11 B 325 LYS GLU ILE GLY ILE LEU GLN LEU GLN ILE GLU GLN ASP SEQRES 12 B 325 THR GLY LYS SER HIS TYR THR GLU THR ASP LYS ASP VAL SEQRES 13 B 325 ILE THR LEU VAL ASP LEU ASN ARG SER ASN VAL PRO LEU SEQRES 14 B 325 ILE GLU LEU VAL THR LYS PRO ASP PHE SER ASP ILE LYS SEQRES 15 B 325 GLN VAL ARG ALA PHE ILE LYS LYS TYR GLN ASN LEU VAL SEQRES 16 B 325 ARG HIS LEU HIS ILE SER SER GLY ASP LEU GLU THR GLY SEQRES 17 B 325 ALA MET ARG VAL ASP VAL ASN LEU SER ILE ASN GLU TYR SEQRES 18 B 325 ALA ARG VAL GLU LEU LYS ASN LEU PRO ASN THR SER SER SEQRES 19 B 325 ILE ILE ASN ALA ILE LYS TYR GLU TYR GLN ARG GLN VAL SEQRES 20 B 325 GLU LEU ILE SER VAL GLY ASP THR SER SER LEU MET GLU SEQRES 21 B 325 PRO GLU THR ARG GLY TRP THR GLY SER SER THR VAL LYS SEQRES 22 B 325 LEU ARG SER LYS GLU THR THR ILE ASP TYR ARG TYR MET SEQRES 23 B 325 PRO ASP PRO GLU LEU PRO TYR ILE ASN LEU ALA PRO ASP SEQRES 24 B 325 VAL ILE SER GLY VAL ARG GLY LEU MET PRO GLN LEU PRO SEQRES 25 B 325 ASP ASP LEU GLU SER SER GLY GLU ASN LEU TYR PHE GLN SEQRES 1 F 160 PHE VAL SER THR GLY GLY ALA LYS ILE GLY LYS LYS PHE SEQRES 2 F 160 GLU ASN MET ASN GLN ILE ARG ASP TYR LEU SER ARG PRO SEQRES 3 F 160 VAL TRP SER VAL HIS GLU TYR LEU GLY ILE ASN THR LYS SEQRES 4 F 160 GLU GLU LYS LEU GLU PRO PRO SER ALA GLU ALA VAL LYS SEQRES 5 F 160 LYS LEU LEU ARG LEU SER GLY LEU PRO LEU GLU GLY ALA SEQRES 6 F 160 ASP ILE LYS GLU ILE GLN MET ARG LEU ALA LYS GLN LEU SEQRES 7 F 160 SER PHE ILE ASN LYS LEU HIS ASN ILE PRO VAL GLU GLY SEQRES 8 F 160 GLU LYS HIS THR LYS GLU TYR ASP ALA ARG LEU VAL GLN SEQRES 9 F 160 ARG ASN THR LYS GLN LEU ASN TYR THR LYS LEU LEU GLU SEQRES 10 F 160 GLY ILE SER HIS GLN LYS GLN ASP ALA GLU LEU GLY GLU SEQRES 11 F 160 VAL SER GLY SER TRP LYS ALA THR GLY LEU ALA ALA GLU SEQRES 12 F 160 SER LYS ASN ALA TYR PHE VAL VAL LYS GLU GLY LEU LEU SEQRES 13 F 160 LYS ASN ARG LYS HET NO3 A 501 4 HETNAM NO3 NITRATE ION FORMUL 4 NO3 N O3 1- FORMUL 5 HOH *274(H2 O) HELIX 1 1 SER A 6 ASN A 22 1 17 HELIX 2 2 SER A 66 GLU A 70 5 5 HELIX 3 3 ALA A 78 ALA A 87 1 10 HELIX 4 4 ASP A 98 MET A 102 5 5 HELIX 5 5 PRO A 120 LYS A 124 5 5 HELIX 6 6 SER A 131 CYS A 140 1 10 HELIX 7 7 VAL A 155 GLY A 162 1 8 HELIX 8 8 LYS A 195 ASP A 207 1 13 HELIX 9 9 SER A 218 ASN A 228 1 11 HELIX 10 10 GLU A 242 SER A 244 5 3 HELIX 11 11 GLY A 251 LEU A 266 1 16 HELIX 12 12 ILE A 275 LYS A 279 5 5 HELIX 13 13 ASN A 280 LEU A 297 1 18 HELIX 14 14 PHE A 320 SER A 325 1 6 HELIX 15 15 GLY A 328 CYS A 343 1 16 HELIX 16 16 CYS A 343 PHE A 369 1 27 HELIX 17 17 SER A 399 ALA A 408 1 10 HELIX 18 18 THR A 421 ALA A 427 1 7 HELIX 19 19 ASP A 452 ILE A 463 1 12 HELIX 20 20 ASN B 79 GLY B 94 1 16 HELIX 21 21 LYS B 136 ASP B 140 1 5 HELIX 22 22 ASP B 195 LEU B 213 1 19 HELIX 23 23 ASN B 246 LEU B 264 1 19 HELIX 24 24 ALA B 312 LEU B 322 1 11 HELIX 25 25 ASN F 38 LEU F 46 1 9 HELIX 26 26 SER F 52 LEU F 57 1 6 HELIX 27 27 SER F 70 SER F 81 1 12 HELIX 28 28 ASP F 89 ASN F 105 1 17 HELIX 29 29 LYS F 106 ILE F 110 5 5 HELIX 30 30 ASN F 134 HIS F 144 1 11 HELIX 31 31 ASP F 148 GLY F 152 5 5 SHEET 1 A12 PHE A 24 ILE A 27 0 SHEET 2 A12 HIS A 90 THR A 95 -1 O LYS A 94 N THR A 25 SHEET 3 A12 VAL A 48 LYS A 52 1 N ALA A 49 O HIS A 90 SHEET 4 A12 PHE A 145 ASP A 150 1 O LEU A 147 N SER A 50 SHEET 5 A12 THR A 188 SER A 193 -1 O THR A 188 N ASP A 150 SHEET 6 A12 LEU A 165 LYS A 168 -1 N PHE A 167 O ILE A 191 SHEET 7 A12 SER A 431 PRO A 435 -1 O SER A 433 N GLY A 166 SHEET 8 A12 GLY A 443 VAL A 447 -1 O LEU A 444 N MET A 434 SHEET 9 A12 LEU A 387 PRO A 391 -1 N VAL A 390 O GLN A 445 SHEET 10 A12 LYS A 236 VAL A 240 1 N GLY A 238 O LEU A 387 SHEET 11 A12 GLU A 269 SER A 274 1 O GLU A 269 N VAL A 237 SHEET 12 A12 LYS F 31 ILE F 32 -1 O LYS F 31 N SER A 274 SHEET 1 B 2 ILE A 314 LYS A 315 0 SHEET 2 B 2 ILE A 318 LEU A 319 -1 O ILE A 318 N LYS A 315 SHEET 1 C 4 GLN B 96 VAL B 97 0 SHEET 2 C 4 ALA B 127 ARG B 128 -1 O ARG B 128 N GLN B 96 SHEET 3 C 4 ALA B 145 GLN B 157 -1 O LEU B 153 N ALA B 127 SHEET 4 C 4 LYS B 131 SER B 135 -1 N LEU B 134 O LYS B 146 SHEET 1 D 8 GLN B 96 VAL B 97 0 SHEET 2 D 8 ALA B 127 ARG B 128 -1 O ARG B 128 N GLN B 96 SHEET 3 D 8 ALA B 145 GLN B 157 -1 O LEU B 153 N ALA B 127 SHEET 4 D 8 PRO B 183 THR B 189 -1 O GLU B 186 N GLN B 154 SHEET 5 D 8 LEU B 29 GLN B 38 -1 N ILE B 35 O LEU B 187 SHEET 6 D 8 MET B 225 ILE B 233 -1 O ASN B 230 N GLY B 32 SHEET 7 D 8 VAL B 239 LEU B 241 -1 O VAL B 239 N LEU B 231 SHEET 8 D 8 GLU B 277 ARG B 279 1 O ARG B 279 N GLU B 240 SHEET 1 E 3 TYR B 117 THR B 120 0 SHEET 2 E 3 ASP B 104 HIS B 107 -1 N ASP B 104 O THR B 120 SHEET 3 E 3 MET B 301 PRO B 302 -1 O MET B 301 N ARG B 105 SHEET 1 F 3 LYS B 161 TYR B 164 0 SHEET 2 F 3 ILE B 172 ASP B 176 -1 O LEU B 174 N HIS B 163 SHEET 3 F 3 PHE F 172 LYS F 175 -1 O VAL F 174 N THR B 173 CISPEP 1 GLY A 129 SER A 130 0 6.44 CISPEP 2 ARG A 233 PRO A 234 0 -0.96 SITE 1 AC1 11 ARG A 233 PHE A 243 SER A 244 MET A 248 SITE 2 AC1 11 PHE A 252 HIS A 253 TYR A 256 PRO A 391 SITE 3 AC1 11 HOH A 632 HOH A 641 LEU F 46 CRYST1 61.949 86.297 191.233 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005229 0.00000