HEADER RNA BINDING PROTEIN 02-OCT-13 4N0L TITLE METHANOPYRUS KANDLERI CSM3 CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED COMPONENT OF A THERMOPHILE-SPECIFIC DNA REPAIR COMPND 3 SYSTEM, CONTAINS A RAMP DOMAIN; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: CSM3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOPYRUS KANDLERI; SOURCE 3 ORGANISM_TAXID: 190192; SOURCE 4 STRAIN: AV19 / DSM 6324 / JCM 9639 / NBRC 100938; SOURCE 5 GENE: MK1316; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RRM-LIKE FOLD, CRRNA BINDING, CAS/CSM PROTEINS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.HRLE,A.A.SU,J.EBERT,C.BENDA,E.CONTI,L.RANDAU REVDAT 4 28-FEB-24 4N0L 1 REMARK LINK REVDAT 3 15-NOV-17 4N0L 1 REMARK REVDAT 2 29-JAN-14 4N0L 1 JRNL REVDAT 1 13-NOV-13 4N0L 0 JRNL AUTH A.HRLE,A.A.SU,J.EBERT,C.BENDA,L.RANDAU,E.CONTI JRNL TITL STRUCTURE AND RNA-BINDING PROPERTIES OF THE TYPE III-A JRNL TITL 2 CRISPR-ASSOCIATED PROTEIN CSM3. JRNL REF RNA BIOL. V. 10 1670 2013 JRNL REFN ISSN 1547-6286 JRNL PMID 24157656 JRNL DOI 10.4161/RNA.26500 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 66282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.5240 - 6.8220 1.00 2639 139 0.1724 0.1528 REMARK 3 2 6.8220 - 5.4154 1.00 2641 134 0.2131 0.2419 REMARK 3 3 5.4154 - 4.7311 1.00 2645 137 0.1745 0.2186 REMARK 3 4 4.7311 - 4.2986 1.00 2653 133 0.1519 0.1647 REMARK 3 5 4.2986 - 3.9905 1.00 2619 140 0.1564 0.1775 REMARK 3 6 3.9905 - 3.7553 1.00 2659 141 0.1618 0.1674 REMARK 3 7 3.7553 - 3.5672 1.00 2632 136 0.1645 0.1925 REMARK 3 8 3.5672 - 3.4119 1.00 2613 140 0.1860 0.2142 REMARK 3 9 3.4119 - 3.2806 1.00 2641 144 0.2127 0.2364 REMARK 3 10 3.2806 - 3.1674 1.00 2617 135 0.2043 0.2525 REMARK 3 11 3.1674 - 3.0683 1.00 2678 141 0.2001 0.1930 REMARK 3 12 3.0683 - 2.9806 1.00 2619 135 0.1985 0.2396 REMARK 3 13 2.9806 - 2.9022 1.00 2603 136 0.2131 0.2676 REMARK 3 14 2.9022 - 2.8313 1.00 2683 144 0.2258 0.2655 REMARK 3 15 2.8313 - 2.7670 1.00 2636 137 0.2269 0.2735 REMARK 3 16 2.7670 - 2.7081 1.00 2661 143 0.2349 0.2585 REMARK 3 17 2.7081 - 2.6539 1.00 2596 136 0.2361 0.2790 REMARK 3 18 2.6539 - 2.6038 1.00 2644 139 0.2313 0.2591 REMARK 3 19 2.6038 - 2.5573 1.00 2660 143 0.2354 0.2686 REMARK 3 20 2.5573 - 2.5140 1.00 2633 138 0.2371 0.2848 REMARK 3 21 2.5140 - 2.4734 1.00 2612 137 0.2621 0.2417 REMARK 3 22 2.4734 - 2.4354 1.00 2654 141 0.2793 0.3128 REMARK 3 23 2.4354 - 2.3996 0.99 2532 135 0.2935 0.3112 REMARK 3 24 2.3996 - 2.3700 0.89 2402 126 0.3191 0.3529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5396 REMARK 3 ANGLE : 0.825 7314 REMARK 3 CHIRALITY : 0.029 747 REMARK 3 PLANARITY : 0.003 989 REMARK 3 DIHEDRAL : 14.240 2026 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -13.8794 11.2338 21.9168 REMARK 3 T TENSOR REMARK 3 T11: 0.1240 T22: 0.1051 REMARK 3 T33: 0.1207 T12: -0.1075 REMARK 3 T13: 0.0241 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.1448 L22: 0.1022 REMARK 3 L33: 0.0675 L12: 0.0403 REMARK 3 L13: 0.0200 L23: 0.0966 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: -0.1033 S13: -0.0671 REMARK 3 S21: -0.1063 S22: -0.0061 S23: 0.0095 REMARK 3 S31: -0.1191 S32: 0.0410 S33: -0.0710 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : LN2-COOLED DYNAMICALLY BENDABLE REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66282 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 69.494 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ZN-SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MES, 50% MPD, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.08350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.08350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.87650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.50850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.87650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.50850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.08350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.87650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.50850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.08350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.87650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.50850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 200 REMARK 465 ASN A 201 REMARK 465 ALA A 202 REMARK 465 ILE A 203 REMARK 465 ASN A 204 REMARK 465 ARG A 205 REMARK 465 VAL A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 GLU A 209 REMARK 465 ALA A 210 REMARK 465 ASN A 211 REMARK 465 PRO A 212 REMARK 465 ARG A 213 REMARK 465 MET B -1 REMARK 465 VAL B 0 REMARK 465 GLU B 198 REMARK 465 ASN B 199 REMARK 465 ALA B 200 REMARK 465 ILE B 201 REMARK 465 ASN B 202 REMARK 465 ARG B 203 REMARK 465 VAL B 204 REMARK 465 SER B 205 REMARK 465 GLY B 206 REMARK 465 GLU B 207 REMARK 465 ALA B 208 REMARK 465 ASN B 209 REMARK 465 PRO B 210 REMARK 465 ARG B 211 REMARK 465 SER B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 4 CG1 CG2 CD1 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 ILE A 29 CG1 CG2 CD1 REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 92 CZ NH1 NH2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 VAL A 166 CG1 CG2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 ARG A 190 NH1 NH2 REMARK 470 SER A 214 OG REMARK 470 ILE B 2 CG1 CG2 CD1 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 ILE B 27 CG1 CG2 CD1 REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 HIS B 197 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 229 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 283 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 227 CA GLU A 227 C 0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 227 CA - C - O ANGL. DEV. = 14.3 DEGREES REMARK 500 GLU A 227 CA - C - O ANGL. DEV. = 16.5 DEGREES REMARK 500 GLU A 227 CA - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -138.16 -132.73 REMARK 500 HIS A 82 -69.91 70.38 REMARK 500 ASP A 165 60.84 -118.88 REMARK 500 ALA A 301 -93.63 -94.03 REMARK 500 PRO A 348 40.69 -80.38 REMARK 500 GLU B 25 -54.37 76.17 REMARK 500 HIS B 80 -69.80 70.96 REMARK 500 ASP B 163 60.55 -119.84 REMARK 500 ALA B 286 71.80 -177.35 REMARK 500 PRO B 346 43.77 -79.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 226 GLU A 227 148.46 REMARK 500 PRO B 284 GLY B 285 -35.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 CYS A 88 SG 112.1 REMARK 620 3 CYS A 115 SG 97.5 104.7 REMARK 620 4 CYS A 118 SG 109.7 107.6 124.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 84 NE2 REMARK 620 2 CYS B 86 SG 117.9 REMARK 620 3 CYS B 113 SG 99.3 108.1 REMARK 620 4 CYS B 116 SG 108.0 105.9 118.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 DBREF 4N0L A 1 351 UNP Q8TVS2 Q8TVS2_METKA 1 351 DBREF 4N0L B -1 349 UNP Q8TVS2 Q8TVS2_METKA 1 351 SEQRES 1 A 351 MET VAL GLY ILE GLY GLY THR ILE THR LEU VAL GLY GLU SEQRES 2 A 351 ILE ARG LEU ARG THR GLY THR ARG ILE GLY THR SER GLU SEQRES 3 A 351 GLU GLU ILE GLU ILE GLY GLY LEU ASP ASN PRO VAL ILE SEQRES 4 A 351 ARG ASP PRO VAL SER GLY TYR PRO TYR VAL PRO GLY SER SEQRES 5 A 351 SER LEU LYS GLY ARG ALA ARG ALA LEU PHE GLU LEU ALA SEQRES 6 A 351 TRP MET LYS SER ARG GLU ILE GLU PRO ASP VAL PHE PHE SEQRES 7 A 351 GLY ALA HIS HIS ASN GLU ARG HIS GLU CYS GLY PHE VAL SEQRES 8 A 351 ARG ARG GLU VAL TYR GLU GLU ALA LYS GLU TYR LEU ARG SEQRES 9 A 351 GLU ASP PRO PRO TRP LEU GLU ASN GLY THR CYS PRO VAL SEQRES 10 A 351 CYS ARG ILE PHE GLY SER ALA GLY ASP GLY ILE GLY PHE SEQRES 11 A 351 SER ASP PRO GLY ARG LEU GLU ASP GLU ARG ARG GLY LEU SEQRES 12 A 351 GLY TYR ASP PRO TYR GLY ARG TYR ARG ASP PRO ASN ASP SEQRES 13 A 351 ALA GLN GLU LEU SER GLY VAL VAL ASP VAL LYS LYS GLU SEQRES 14 A 351 ALA ARG VAL ALA PHE ARG ASP ALA HIS PRO THR THR TYR SEQRES 15 A 351 THR VAL ASN ASP VAL PHE GLU ARG ALA GLY GLU PRO THR SEQRES 16 A 351 GLU VAL LYS HIS GLU ASN ALA ILE ASN ARG VAL SER GLY SEQRES 17 A 351 GLU ALA ASN PRO ARG SER MET GLU ARG VAL PRO LYS GLY SEQRES 18 A 351 SER ARG PHE GLY LEU GLU VAL VAL TYR ARG VAL GLU ASP SEQRES 19 A 351 GLY GLU GLU LEU GLU SER ASP LEU LYS TYR LEU MET SER SEQRES 20 A 351 SER LEU LYS LEU VAL GLU ASP GLN GLY ILE GLY HIS SER SEQRES 21 A 351 THR SER ARG GLY TYR GLY ARG VAL GLU PHE ARG ILE ALA SEQRES 22 A 351 ALA LEU CYS ALA ARG SER THR GLY TRP TYR LEU ASP PRO SEQRES 23 A 351 GLY ALA GLY GLU GLY PHE PRO GLU GLU GLU ASP LYS ASP SEQRES 24 A 351 GLU ALA ALA ASP GLU VAL THR TYR LEU SER ASP LEU GLU SEQRES 25 A 351 ALA GLU ARG TYR GLU ILE VAL ILE ARG ALA ARG ASP LEU SEQRES 26 A 351 GLU ASP ARG ALA TYR LEU ARG PRO GLU GLU TRP VAL GLU SEQRES 27 A 351 ARG LEU ASP GLU VAL VAL GLY GLU LEU PRO TRP GLY ARG SEQRES 1 B 351 MET VAL GLY ILE GLY GLY THR ILE THR LEU VAL GLY GLU SEQRES 2 B 351 ILE ARG LEU ARG THR GLY THR ARG ILE GLY THR SER GLU SEQRES 3 B 351 GLU GLU ILE GLU ILE GLY GLY LEU ASP ASN PRO VAL ILE SEQRES 4 B 351 ARG ASP PRO VAL SER GLY TYR PRO TYR VAL PRO GLY SER SEQRES 5 B 351 SER LEU LYS GLY ARG ALA ARG ALA LEU PHE GLU LEU ALA SEQRES 6 B 351 TRP MET LYS SER ARG GLU ILE GLU PRO ASP VAL PHE PHE SEQRES 7 B 351 GLY ALA HIS HIS ASN GLU ARG HIS GLU CYS GLY PHE VAL SEQRES 8 B 351 ARG ARG GLU VAL TYR GLU GLU ALA LYS GLU TYR LEU ARG SEQRES 9 B 351 GLU ASP PRO PRO TRP LEU GLU ASN GLY THR CYS PRO VAL SEQRES 10 B 351 CYS ARG ILE PHE GLY SER ALA GLY ASP GLY ILE GLY PHE SEQRES 11 B 351 SER ASP PRO GLY ARG LEU GLU ASP GLU ARG ARG GLY LEU SEQRES 12 B 351 GLY TYR ASP PRO TYR GLY ARG TYR ARG ASP PRO ASN ASP SEQRES 13 B 351 ALA GLN GLU LEU SER GLY VAL VAL ASP VAL LYS LYS GLU SEQRES 14 B 351 ALA ARG VAL ALA PHE ARG ASP ALA HIS PRO THR THR TYR SEQRES 15 B 351 THR VAL ASN ASP VAL PHE GLU ARG ALA GLY GLU PRO THR SEQRES 16 B 351 GLU VAL LYS HIS GLU ASN ALA ILE ASN ARG VAL SER GLY SEQRES 17 B 351 GLU ALA ASN PRO ARG SER MET GLU ARG VAL PRO LYS GLY SEQRES 18 B 351 SER ARG PHE GLY LEU GLU VAL VAL TYR ARG VAL GLU ASP SEQRES 19 B 351 GLY GLU GLU LEU GLU SER ASP LEU LYS TYR LEU MET SER SEQRES 20 B 351 SER LEU LYS LEU VAL GLU ASP GLN GLY ILE GLY HIS SER SEQRES 21 B 351 THR SER ARG GLY TYR GLY ARG VAL GLU PHE ARG ILE ALA SEQRES 22 B 351 ALA LEU CYS ALA ARG SER THR GLY TRP TYR LEU ASP PRO SEQRES 23 B 351 GLY ALA GLY GLU GLY PHE PRO GLU GLU GLU ASP LYS ASP SEQRES 24 B 351 GLU ALA ALA ASP GLU VAL THR TYR LEU SER ASP LEU GLU SEQRES 25 B 351 ALA GLU ARG TYR GLU ILE VAL ILE ARG ALA ARG ASP LEU SEQRES 26 B 351 GLU ASP ARG ALA TYR LEU ARG PRO GLU GLU TRP VAL GLU SEQRES 27 B 351 ARG LEU ASP GLU VAL VAL GLY GLU LEU PRO TRP GLY ARG HET ZN A 401 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *181(H2 O) HELIX 1 1 SER A 25 GLY A 32 1 8 HELIX 2 2 PRO A 50 ARG A 70 1 21 HELIX 3 3 GLU A 73 GLY A 79 1 7 HELIX 4 4 ALA A 80 HIS A 82 5 3 HELIX 5 5 ARG A 92 LYS A 100 1 9 HELIX 6 6 GLU A 101 LEU A 103 5 3 HELIX 7 7 CYS A 115 GLY A 122 1 8 HELIX 8 8 ASP A 132 ASP A 138 1 7 HELIX 9 9 ASP A 153 ASN A 155 5 3 HELIX 10 10 ASP A 156 SER A 161 1 6 HELIX 11 11 THR A 180 ASP A 186 1 7 HELIX 12 12 ASP A 186 GLY A 192 1 7 HELIX 13 13 ASP A 234 GLU A 236 5 3 HELIX 14 14 GLU A 237 GLY A 256 1 20 HELIX 15 15 THR A 280 ASP A 285 5 6 HELIX 16 16 GLU A 294 ALA A 301 1 8 HELIX 17 17 VAL A 305 LEU A 311 5 7 HELIX 18 18 ALA A 322 GLU A 326 1 5 HELIX 19 19 ARG A 332 ARG A 339 1 8 HELIX 20 20 ARG A 339 GLU A 346 1 8 HELIX 21 21 PRO B 48 ARG B 68 1 21 HELIX 22 22 GLU B 71 GLY B 77 1 7 HELIX 23 23 ALA B 78 HIS B 80 5 3 HELIX 24 24 ARG B 90 LYS B 98 1 9 HELIX 25 25 GLU B 99 LEU B 101 5 3 HELIX 26 26 CYS B 113 GLY B 120 1 8 HELIX 27 27 ASP B 130 ASP B 136 1 7 HELIX 28 28 ASP B 151 ASN B 153 5 3 HELIX 29 29 ASP B 154 SER B 159 1 6 HELIX 30 30 THR B 178 ASP B 184 1 7 HELIX 31 31 ASP B 184 GLY B 190 1 7 HELIX 32 32 ASP B 232 GLU B 234 5 3 HELIX 33 33 GLU B 235 GLY B 254 1 20 HELIX 34 34 THR B 278 LEU B 282 5 5 HELIX 35 35 GLU B 292 ALA B 299 1 8 HELIX 36 36 VAL B 303 LEU B 309 5 7 HELIX 37 37 ALA B 320 GLU B 324 1 5 HELIX 38 38 ARG B 330 ARG B 337 1 8 HELIX 39 39 ARG B 337 GLU B 344 1 8 SHEET 1 A 5 VAL A 172 PHE A 174 0 SHEET 2 A 5 ARG A 223 ARG A 231 -1 O VAL A 229 N ALA A 173 SHEET 3 A 5 THR A 7 LEU A 16 -1 N ILE A 14 O PHE A 224 SHEET 4 A 5 VAL A 268 ARG A 278 -1 O CYS A 276 N THR A 9 SHEET 5 A 5 ILE A 318 ARG A 321 -1 O ILE A 320 N LEU A 275 SHEET 1 B 2 THR A 20 ARG A 21 0 SHEET 2 B 2 ARG A 217 VAL A 218 -1 O VAL A 218 N THR A 20 SHEET 1 C 2 ILE A 39 ARG A 40 0 SHEET 2 C 2 PRO A 47 TYR A 48 -1 O TYR A 48 N ILE A 39 SHEET 1 D 2 GLY A 258 HIS A 259 0 SHEET 2 D 2 GLY A 264 TYR A 265 -1 O TYR A 265 N GLY A 258 SHEET 1 E 2 GLU A 290 PHE A 292 0 SHEET 2 E 2 GLU A 314 TYR A 316 -1 O TYR A 316 N GLU A 290 SHEET 1 F 5 VAL B 170 PHE B 172 0 SHEET 2 F 5 ARG B 221 ARG B 229 -1 O VAL B 227 N ALA B 171 SHEET 3 F 5 THR B 5 LEU B 14 -1 N ILE B 12 O PHE B 222 SHEET 4 F 5 VAL B 266 ARG B 276 -1 O CYS B 274 N THR B 7 SHEET 5 F 5 ILE B 316 ARG B 319 -1 O ILE B 316 N ALA B 275 SHEET 1 G 2 THR B 18 ARG B 19 0 SHEET 2 G 2 ARG B 215 VAL B 216 -1 O VAL B 216 N THR B 18 SHEET 1 H 2 ILE B 37 ARG B 38 0 SHEET 2 H 2 PRO B 45 TYR B 46 -1 O TYR B 46 N ILE B 37 SHEET 1 I 2 GLY B 256 HIS B 257 0 SHEET 2 I 2 GLY B 262 TYR B 263 -1 O TYR B 263 N GLY B 256 SHEET 1 J 2 GLU B 288 PHE B 290 0 SHEET 2 J 2 GLU B 312 TYR B 314 -1 O TYR B 314 N GLU B 288 LINK NE2 HIS A 86 ZN ZN A 401 1555 1555 2.05 LINK SG CYS A 88 ZN ZN A 401 1555 1555 2.43 LINK SG CYS A 115 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 118 ZN ZN A 401 1555 1555 2.33 LINK NE2 HIS B 84 ZN ZN B 401 1555 1555 2.04 LINK SG CYS B 86 ZN ZN B 401 1555 1555 2.33 LINK SG CYS B 113 ZN ZN B 401 1555 1555 2.34 LINK SG CYS B 116 ZN ZN B 401 1555 1555 2.30 CISPEP 1 GLY A 3 ILE A 4 0 -1.47 CISPEP 2 GLU A 193 PRO A 194 0 -4.37 CISPEP 3 SER A 214 MET A 215 0 -1.81 CISPEP 4 PHE A 292 PRO A 293 0 -5.12 CISPEP 5 ALA A 302 ASP A 303 0 26.70 CISPEP 6 GLY B 1 ILE B 2 0 -1.66 CISPEP 7 GLU B 191 PRO B 192 0 -3.18 CISPEP 8 PHE B 290 PRO B 291 0 -4.61 SITE 1 AC1 4 HIS A 86 CYS A 88 CYS A 115 CYS A 118 SITE 1 AC2 4 HIS B 84 CYS B 86 CYS B 113 CYS B 116 CRYST1 95.753 101.017 174.167 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010444 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005742 0.00000