HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-OCT-13 4N0R TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDE HYDROLASE (BVU_0362) FROM TITLE 2 BACTEROIDES VULGATUS ATCC 8482 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLYCOSIDE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_0362, YP_001297703.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS THREE DOMAINS PROTEIN, PUTATIVE GLYCOSIDE HYDROLASE DOMAIN (PF13204), KEYWDS 2 WITH N-TERMINAL AND C-TERMINAL IG-LIKE DOMAINS, STRUCTURAL GENOMICS, KEYWDS 3 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4N0R 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4N0R 1 JRNL REVDAT 2 15-NOV-17 4N0R 1 REMARK REVDAT 1 23-OCT-13 4N0R 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE GLYCOSIDE HYDROLASE JRNL TITL 2 (BVU_0362) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.80 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 127320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8834 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 459 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 1264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8897 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8274 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12128 ; 1.600 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19076 ; 1.121 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1106 ; 6.675 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 444 ;33.280 ;23.468 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1416 ;11.190 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;15.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1276 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10114 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2199 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4179 ; 2.577 ; 3.133 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4178 ; 2.568 ; 3.132 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5243 ; 3.392 ; 5.848 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 534 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2111 -3.3635 47.3191 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0296 REMARK 3 T33: 0.0065 T12: 0.0020 REMARK 3 T13: -0.0057 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.0177 L22: 0.6011 REMARK 3 L33: 0.6991 L12: -0.3810 REMARK 3 L13: -0.4075 L23: 0.2443 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: 0.1024 S13: -0.0132 REMARK 3 S21: -0.0523 S22: -0.0132 S23: -0.0241 REMARK 3 S31: 0.0198 S32: 0.0568 S33: -0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 533 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2242 1.2790 87.8498 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0225 REMARK 3 T33: 0.0059 T12: -0.0023 REMARK 3 T13: 0.0054 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.0654 L22: 0.4341 REMARK 3 L33: 0.7363 L12: 0.2955 REMARK 3 L13: 0.3865 L23: 0.1846 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.1114 S13: 0.0198 REMARK 3 S21: 0.0378 S22: -0.0062 S23: -0.0165 REMARK 3 S31: -0.0118 S32: 0.0374 S33: -0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. WATERS AND LIGANDS WERE EXCLUDED FROM TLS ASSIGNMENT. REMARK 3 4. NICKEL (NI) AND GLYCEROL(GOL) FROM THE CRYSTALLIZATION AND REMARK 3 CRYOPROTECTANT SOLUTION HAVE BEEN MODELED. THE MODELING OF NI IS REMARK 3 SUPPORTED BY ANOMALOUS DIFFERENCE FOURIER MAPS. 5. AN REMARK 3 UNIDENTIFIED LIGAND (UNL) HAS BEEN MODELED INTO ELECTRON DENSITY REMARK 3 IN A POCKET LINED BY W402, Y173, E354, Q328 AND E276 IN EACH REMARK 3 CHAIN. DUE TO THE PRESENCE OF AN ANOMALOUS DIFFERENCE FOURIER REMARK 3 PEAK OVERLAPPING THIS REGION, A NICKEL ION WAS MODELED ADJACENT REMARK 3 TO THE MODELED UNL. 6. THE N-TERMINUS OF BOTH CHAINS COME REMARK 3 TOGETHER NEAR AN EXTENDED ANOMALOUS DIFFERENCE FOURIER PEAK, BUT REMARK 3 THE DISORDER OF THE ANOMALOUS PEAK AND SURROUNDING ELECTRON REMARK 3 DENSITY PREVENTED MODELING GLY-0 FROM BOTH CHAINS AND THE REMARK 3 PRESUMED HYDRATED NICKEL ION. REMARK 4 REMARK 4 4N0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.67 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.9792, 0.97868 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127394 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.211 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M NICKEL (II) CHLORIDE, 22.0% REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, 0.2M NDSB-256, 0.1M REMARK 280 TRIS PH 8.67, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 113.21950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.84200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 113.21950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.84200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 LYS B 534 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 534 CG CD CE NZ REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1130 O HOH A 1131 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 134 CG - SE - CE ANGL. DEV. = -13.4 DEGREES REMARK 500 LYS A 458 CD - CE - NZ ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 480 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 480 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 29 -2.31 75.14 REMARK 500 LEU A 175 -0.84 75.35 REMARK 500 GLU A 195 32.86 -96.26 REMARK 500 ASP A 238 -74.55 -159.77 REMARK 500 ARG A 302 68.75 66.21 REMARK 500 ASP A 329 119.11 -174.60 REMARK 500 CYS A 392 85.93 -152.82 REMARK 500 SER A 436 -10.92 75.36 REMARK 500 ALA A 470 -128.45 46.47 REMARK 500 TRP B 29 -1.92 73.06 REMARK 500 ALA B 138 75.51 -152.22 REMARK 500 GLU B 195 32.97 -95.75 REMARK 500 ASP B 238 -71.72 -158.29 REMARK 500 ARG B 302 66.62 65.41 REMARK 500 ASP B 329 118.21 -173.63 REMARK 500 CYS B 392 84.89 -153.99 REMARK 500 ASP B 434 76.39 -151.01 REMARK 500 SER B 436 -13.18 77.46 REMARK 500 ALA B 470 -128.31 45.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 605 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 HOH A1123 O 101.8 REMARK 620 3 HOH A1124 O 87.3 105.2 REMARK 620 4 HOH A1125 O 96.1 60.9 166.1 REMARK 620 5 HOH A1126 O 96.3 110.1 143.0 50.2 REMARK 620 6 HOH A1127 O 83.0 175.2 74.8 119.0 69.1 REMARK 620 7 HOH A1129 O 149.5 106.2 73.9 107.9 85.5 69.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 604 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 121 NE2 REMARK 620 2 HOH A1206 O 111.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 602 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 OE2 REMARK 620 2 GLN A 328 OE1 98.5 REMARK 620 3 UNL A 601 O2 171.3 84.2 REMARK 620 4 UNL A 601 O3 93.4 166.3 83.1 REMARK 620 5 UNL A 601 O1 87.6 98.3 83.9 75.4 REMARK 620 6 UNL A 601 O7 105.4 132.3 67.2 36.4 43.7 REMARK 620 7 HOH A1334 O 73.8 112.4 112.9 77.3 145.8 113.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 603 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 428 NE2 REMARK 620 2 HOH A1188 O 79.0 REMARK 620 3 HOH A1189 O 99.1 169.7 REMARK 620 4 HOH A1190 O 92.1 109.4 80.7 REMARK 620 5 HOH A1192 O 102.1 91.3 79.1 156.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 606 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 514 NE2 REMARK 620 2 HOH A1130 O 99.9 REMARK 620 3 HOH A1131 O 87.7 50.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 604 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 112 NE2 REMARK 620 2 HOH B1152 O 84.9 REMARK 620 3 HOH B1153 O 138.9 66.6 REMARK 620 4 HOH B1154 O 158.6 104.3 61.8 REMARK 620 5 HOH B1155 O 95.9 107.0 119.9 63.1 REMARK 620 6 HOH B1156 O 97.7 167.0 116.8 69.1 60.1 REMARK 620 7 HOH B1157 O 105.6 136.4 79.6 81.2 113.6 55.2 REMARK 620 8 HOH B1180 O 81.0 69.3 61.8 120.2 175.3 123.6 70.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 603 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 121 NE2 REMARK 620 2 HOH B1135 O 117.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 602 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 276 OE2 REMARK 620 2 GLN B 328 OE1 98.0 REMARK 620 3 UNL B 601 O2 172.0 82.2 REMARK 620 4 UNL B 601 O1 88.9 94.7 83.1 REMARK 620 5 UNL B 601 O7 106.6 136.2 68.6 51.3 REMARK 620 6 HOH B1324 O 76.2 105.1 111.6 156.6 115.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 606 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 428 NE2 REMARK 620 2 HOH B1171 O 93.4 REMARK 620 3 HOH B1172 O 157.1 101.9 REMARK 620 4 HOH B1173 O 88.0 131.9 69.1 REMARK 620 5 HOH B1174 O 82.0 155.5 90.5 72.2 REMARK 620 6 HOH B1181 O 97.0 65.9 74.4 66.2 138.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 605 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 514 NE2 REMARK 620 2 HOH B1226 O 80.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-418078 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 23-534) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG. MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4N0R A 23 534 UNP A6KXB7 A6KXB7_BACV8 23 534 DBREF 4N0R B 23 534 UNP A6KXB7 A6KXB7_BACV8 23 534 SEQADV 4N0R GLY A 0 UNP A6KXB7 EXPRESSION TAG SEQADV 4N0R GLY B 0 UNP A6KXB7 EXPRESSION TAG SEQRES 1 A 513 GLY GLN ASP LYS VAL GLU CYS TRP ASP ARG PHE GLU LEU SEQRES 2 A 513 SER PHE LYS GLN VAL THR LYS GLY ASN PRO PHE ASP ILE SEQRES 3 A 513 ARG LEU SER ALA THR PHE VAL CYS GLY LYS GLU LYS LYS SEQRES 4 A 513 THR VAL GLU GLY PHE TYR ASP GLY GLU ASN THR TYR ARG SEQRES 5 A 513 ILE ARG PHE MSE PRO ALA VAL ALA GLY GLU TRP ARG TYR SEQRES 6 A 513 VAL THR SER SER SER ILE GLY ALA MSE ASN GLY ARG LYS SEQRES 7 A 513 GLY THR PHE THR VAL ILE PRO ALA GLY LYS ASP ASN HIS SEQRES 8 A 513 GLY MSE VAL LEU VAL ASP GLY GLU HIS ASN PHE LYS TYR SEQRES 9 A 513 ALA ASP GLY THR ARG TYR TYR PRO MSE GLY THR THR ALA SEQRES 10 A 513 TYR ALA TRP THR HIS MSE LYS GLU THR THR GLN GLU ALA SEQRES 11 A 513 THR LEU LYS SER PHE GLY GLU ALA GLY PHE ASN LYS VAL SEQRES 12 A 513 ARG MSE CYS VAL PHE PRO LYS ASN TYR SER LEU VAL LYS SEQRES 13 A 513 ASP GLU PRO ALA LEU TYR PRO PHE GLU ILE GLU LYS THR SEQRES 14 A 513 ILE LYS ASP LYS GLU GLY ASN GLU ARG LYS GLU TRP ASP SEQRES 15 A 513 PHE ASP ARG PHE ASP PRO ALA PHE PHE GLN HIS LEU GLU SEQRES 16 A 513 LYS ARG ILE ASP GLN LEU ASN ARG LEU GLY ILE GLU ALA SEQRES 17 A 513 ASP LEU ILE LEU PHE HIS PRO TYR ASP LYS GLY ARG TRP SEQRES 18 A 513 GLY PHE ASP ALA MSE SER ASN GLU VAL ASN VAL ARG TYR SEQRES 19 A 513 ILE LYS TYR ILE THR ALA ARG LEU ALA SER PHE ARG ASN SEQRES 20 A 513 VAL TRP TRP SER MSE ALA ASN GLU TRP ASP TYR VAL LYS SEQRES 21 A 513 ALA LYS THR VAL ASP ASP TRP LYS LEU LEU THR LYS THR SEQRES 22 A 513 VAL VAL GLU ASN ASP PRO TYR ARG HIS LEU CYS SER ILE SEQRES 23 A 513 HIS GLY ALA THR ALA THR TYR PHE ASP TYR TRP MSE PRO SEQRES 24 A 513 GLU PHE THR HIS VAL SER ILE GLN ASP GLU ALA PRO VAL SEQRES 25 A 513 LEU SER SER THR ALA SER ALA THR LEU ARG LYS ILE TYR SEQRES 26 A 513 ARG LYS PRO VAL ILE CYS ASP GLU VAL GLY TYR GLU GLY SEQRES 27 A 513 ASN LEU PRO TYR ARG TRP GLY ARG LEU SER PRO GLN GLN SEQRES 28 A 513 MSE THR CYS PHE ILE LEU ASN GLY LEU LEU GLY GLY ILE SEQRES 29 A 513 TYR VAL THR HIS GLY GLU CYS TYR GLN GLN GLY ASN GLU SEQRES 30 A 513 PRO ILE PHE TRP ALA GLN GLY GLY SER LEU LYS GLY GLU SEQRES 31 A 513 SER TRP LYS ARG VAL LYS PHE LEU ARG THR ILE ILE GLU SEQRES 32 A 513 ALA ALA PRO HIS PRO LEU GLU MSE ALA ASP ILE SER ARG SEQRES 33 A 513 ASP LEU VAL THR SER THR ALA GLY PRO ASP TYR TYR LEU SEQRES 34 A 513 VAL ASN MSE GLY LYS ASP VAL LYS GLY PHE TRP THR PHE SEQRES 35 A 513 ASN LEU PRO VAL LYS ASN ALA ASP TYR ASN LYS LEU GLN SEQRES 36 A 513 LYS ASN LYS ARG PHE LYS VAL GLU ILE ILE ASP VAL TRP SEQRES 37 A 513 ALA MSE THR VAL THR GLU TYR PRO VAL ILE PHE GLU THR SEQRES 38 A 513 THR GLU GLU LEU ASP TYR ARG VAL PHE ASP ILE HIS HIS SEQRES 39 A 513 ARG GLY VAL ARG ILE PRO ASP ALA PRO TYR ILE VAL LEU SEQRES 40 A 513 ARG ILE THR GLU VAL LYS SEQRES 1 B 513 GLY GLN ASP LYS VAL GLU CYS TRP ASP ARG PHE GLU LEU SEQRES 2 B 513 SER PHE LYS GLN VAL THR LYS GLY ASN PRO PHE ASP ILE SEQRES 3 B 513 ARG LEU SER ALA THR PHE VAL CYS GLY LYS GLU LYS LYS SEQRES 4 B 513 THR VAL GLU GLY PHE TYR ASP GLY GLU ASN THR TYR ARG SEQRES 5 B 513 ILE ARG PHE MSE PRO ALA VAL ALA GLY GLU TRP ARG TYR SEQRES 6 B 513 VAL THR SER SER SER ILE GLY ALA MSE ASN GLY ARG LYS SEQRES 7 B 513 GLY THR PHE THR VAL ILE PRO ALA GLY LYS ASP ASN HIS SEQRES 8 B 513 GLY MSE VAL LEU VAL ASP GLY GLU HIS ASN PHE LYS TYR SEQRES 9 B 513 ALA ASP GLY THR ARG TYR TYR PRO MSE GLY THR THR ALA SEQRES 10 B 513 TYR ALA TRP THR HIS MSE LYS GLU THR THR GLN GLU ALA SEQRES 11 B 513 THR LEU LYS SER PHE GLY GLU ALA GLY PHE ASN LYS VAL SEQRES 12 B 513 ARG MSE CYS VAL PHE PRO LYS ASN TYR SER LEU VAL LYS SEQRES 13 B 513 ASP GLU PRO ALA LEU TYR PRO PHE GLU ILE GLU LYS THR SEQRES 14 B 513 ILE LYS ASP LYS GLU GLY ASN GLU ARG LYS GLU TRP ASP SEQRES 15 B 513 PHE ASP ARG PHE ASP PRO ALA PHE PHE GLN HIS LEU GLU SEQRES 16 B 513 LYS ARG ILE ASP GLN LEU ASN ARG LEU GLY ILE GLU ALA SEQRES 17 B 513 ASP LEU ILE LEU PHE HIS PRO TYR ASP LYS GLY ARG TRP SEQRES 18 B 513 GLY PHE ASP ALA MSE SER ASN GLU VAL ASN VAL ARG TYR SEQRES 19 B 513 ILE LYS TYR ILE THR ALA ARG LEU ALA SER PHE ARG ASN SEQRES 20 B 513 VAL TRP TRP SER MSE ALA ASN GLU TRP ASP TYR VAL LYS SEQRES 21 B 513 ALA LYS THR VAL ASP ASP TRP LYS LEU LEU THR LYS THR SEQRES 22 B 513 VAL VAL GLU ASN ASP PRO TYR ARG HIS LEU CYS SER ILE SEQRES 23 B 513 HIS GLY ALA THR ALA THR TYR PHE ASP TYR TRP MSE PRO SEQRES 24 B 513 GLU PHE THR HIS VAL SER ILE GLN ASP GLU ALA PRO VAL SEQRES 25 B 513 LEU SER SER THR ALA SER ALA THR LEU ARG LYS ILE TYR SEQRES 26 B 513 ARG LYS PRO VAL ILE CYS ASP GLU VAL GLY TYR GLU GLY SEQRES 27 B 513 ASN LEU PRO TYR ARG TRP GLY ARG LEU SER PRO GLN GLN SEQRES 28 B 513 MSE THR CYS PHE ILE LEU ASN GLY LEU LEU GLY GLY ILE SEQRES 29 B 513 TYR VAL THR HIS GLY GLU CYS TYR GLN GLN GLY ASN GLU SEQRES 30 B 513 PRO ILE PHE TRP ALA GLN GLY GLY SER LEU LYS GLY GLU SEQRES 31 B 513 SER TRP LYS ARG VAL LYS PHE LEU ARG THR ILE ILE GLU SEQRES 32 B 513 ALA ALA PRO HIS PRO LEU GLU MSE ALA ASP ILE SER ARG SEQRES 33 B 513 ASP LEU VAL THR SER THR ALA GLY PRO ASP TYR TYR LEU SEQRES 34 B 513 VAL ASN MSE GLY LYS ASP VAL LYS GLY PHE TRP THR PHE SEQRES 35 B 513 ASN LEU PRO VAL LYS ASN ALA ASP TYR ASN LYS LEU GLN SEQRES 36 B 513 LYS ASN LYS ARG PHE LYS VAL GLU ILE ILE ASP VAL TRP SEQRES 37 B 513 ALA MSE THR VAL THR GLU TYR PRO VAL ILE PHE GLU THR SEQRES 38 B 513 THR GLU GLU LEU ASP TYR ARG VAL PHE ASP ILE HIS HIS SEQRES 39 B 513 ARG GLY VAL ARG ILE PRO ASP ALA PRO TYR ILE VAL LEU SEQRES 40 B 513 ARG ILE THR GLU VAL LYS MODRES 4N0R MSE A 77 MET SELENOMETHIONINE MODRES 4N0R MSE A 95 MET SELENOMETHIONINE MODRES 4N0R MSE A 114 MET SELENOMETHIONINE MODRES 4N0R MSE A 134 MET SELENOMETHIONINE MODRES 4N0R MSE A 144 MET SELENOMETHIONINE MODRES 4N0R MSE A 166 MET SELENOMETHIONINE MODRES 4N0R MSE A 247 MET SELENOMETHIONINE MODRES 4N0R MSE A 273 MET SELENOMETHIONINE MODRES 4N0R MSE A 319 MET SELENOMETHIONINE MODRES 4N0R MSE A 373 MET SELENOMETHIONINE MODRES 4N0R MSE A 432 MET SELENOMETHIONINE MODRES 4N0R MSE A 453 MET SELENOMETHIONINE MODRES 4N0R MSE A 491 MET SELENOMETHIONINE MODRES 4N0R MSE B 77 MET SELENOMETHIONINE MODRES 4N0R MSE B 95 MET SELENOMETHIONINE MODRES 4N0R MSE B 114 MET SELENOMETHIONINE MODRES 4N0R MSE B 134 MET SELENOMETHIONINE MODRES 4N0R MSE B 144 MET SELENOMETHIONINE MODRES 4N0R MSE B 166 MET SELENOMETHIONINE MODRES 4N0R MSE B 247 MET SELENOMETHIONINE MODRES 4N0R MSE B 273 MET SELENOMETHIONINE MODRES 4N0R MSE B 319 MET SELENOMETHIONINE MODRES 4N0R MSE B 373 MET SELENOMETHIONINE MODRES 4N0R MSE B 432 MET SELENOMETHIONINE MODRES 4N0R MSE B 453 MET SELENOMETHIONINE MODRES 4N0R MSE B 491 MET SELENOMETHIONINE HET MSE A 77 8 HET MSE A 95 8 HET MSE A 114 8 HET MSE A 134 13 HET MSE A 144 8 HET MSE A 166 8 HET MSE A 247 8 HET MSE A 273 8 HET MSE A 319 8 HET MSE A 373 8 HET MSE A 432 8 HET MSE A 453 8 HET MSE A 491 8 HET MSE B 77 8 HET MSE B 95 8 HET MSE B 114 8 HET MSE B 134 13 HET MSE B 144 8 HET MSE B 166 8 HET MSE B 247 8 HET MSE B 273 8 HET MSE B 319 8 HET MSE B 373 8 HET MSE B 432 8 HET MSE B 453 8 HET MSE B 491 8 HET UNL A 601 7 HET NI A 602 1 HET NI A 603 1 HET NI A 604 1 HET NI A 605 1 HET NI A 606 1 HET GOL A 607 6 HET GOL A 608 6 HET GOL A 609 6 HET UNL B 601 7 HET NI B 602 1 HET NI B 603 1 HET NI B 604 1 HET NI B 605 1 HET NI B 606 1 HET GOL B 607 6 HET GOL B 608 6 HET GOL B 609 6 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM NI NICKEL (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 26(C5 H11 N O2 SE) FORMUL 4 NI 10(NI 2+) FORMUL 9 GOL 6(C3 H8 O3) FORMUL 21 HOH *1264(H2 O) HELIX 1 1 ASN A 43 ILE A 47 5 5 HELIX 2 2 ILE A 92 ASN A 96 5 5 HELIX 3 3 ALA A 140 MSE A 144 5 5 HELIX 4 4 LYS A 145 ALA A 159 1 15 HELIX 5 5 ASP A 208 LEU A 225 1 18 HELIX 6 6 SER A 248 ALA A 264 1 17 HELIX 7 7 GLU A 276 VAL A 280 5 5 HELIX 8 8 THR A 284 ASN A 298 1 15 HELIX 9 9 GLU A 330 LEU A 334 5 5 HELIX 10 10 SER A 335 ARG A 347 1 13 HELIX 11 11 SER A 369 GLY A 383 1 15 HELIX 12 12 ILE A 400 GLY A 405 1 6 HELIX 13 13 GLU A 411 ALA A 426 1 16 HELIX 14 14 ASN B 43 ILE B 47 5 5 HELIX 15 15 ILE B 92 ASN B 96 5 5 HELIX 16 16 ALA B 140 MSE B 144 5 5 HELIX 17 17 LYS B 145 ALA B 159 1 15 HELIX 18 18 ASP B 208 LEU B 225 1 18 HELIX 19 19 SER B 248 ALA B 264 1 17 HELIX 20 20 GLU B 276 VAL B 280 5 5 HELIX 21 21 THR B 284 ASN B 298 1 15 HELIX 22 22 GLU B 330 LEU B 334 5 5 HELIX 23 23 SER B 335 ARG B 347 1 13 HELIX 24 24 SER B 369 GLY B 383 1 15 HELIX 25 25 ILE B 400 GLY B 405 1 6 HELIX 26 26 GLU B 411 ALA B 426 1 16 SHEET 1 A 5 LYS A 25 GLU A 27 0 SHEET 2 A 5 LYS A 99 ILE A 105 1 O ILE A 105 N VAL A 26 SHEET 3 A 5 GLY A 82 SER A 90 -1 N GLY A 82 O VAL A 104 SHEET 4 A 5 LEU A 49 CYS A 55 -1 N VAL A 54 O ARG A 85 SHEET 5 A 5 GLU A 58 GLU A 63 -1 O LYS A 60 N PHE A 53 SHEET 1 B 3 PHE A 32 LYS A 37 0 SHEET 2 B 3 THR A 71 PHE A 76 -1 O PHE A 76 N PHE A 32 SHEET 3 B 3 PHE A 65 TYR A 66 -1 N PHE A 65 O ARG A 73 SHEET 1 C 3 VAL A 115 ASP A 118 0 SHEET 2 C 3 ASN A 122 TYR A 125 -1 O LYS A 124 N LEU A 116 SHEET 3 C 3 ARG A 130 TYR A 131 -1 O TYR A 131 N PHE A 123 SHEET 1 D 5 GLY A 135 THR A 137 0 SHEET 2 D 5 LYS A 163 CYS A 167 1 O LYS A 163 N THR A 136 SHEET 3 D 5 GLU A 228 PHE A 234 1 O ILE A 232 N MSE A 166 SHEET 4 D 5 VAL A 269 ALA A 274 1 O SER A 272 N LEU A 233 SHEET 5 D 5 CYS A 305 SER A 306 1 O SER A 306 N MSE A 273 SHEET 1 E 2 PHE A 185 LYS A 192 0 SHEET 2 E 2 GLU A 198 PHE A 207 -1 O GLU A 201 N LYS A 189 SHEET 1 F 3 VAL A 325 GLN A 328 0 SHEET 2 F 3 VAL A 350 GLU A 354 1 O ILE A 351 N VAL A 325 SHEET 3 F 3 TYR A 386 VAL A 387 1 O TYR A 386 N CYS A 352 SHEET 1 G 2 GLU A 358 GLY A 359 0 SHEET 2 G 2 GLU A 391 CYS A 392 1 O CYS A 392 N GLU A 358 SHEET 1 H 6 GLU A 431 MSE A 432 0 SHEET 2 H 6 THR A 441 GLY A 445 -1 O THR A 443 N GLU A 431 SHEET 3 H 6 TYR A 448 ASN A 452 -1 O LEU A 450 N SER A 442 SHEET 4 H 6 ILE A 526 GLU A 532 -1 O LEU A 528 N VAL A 451 SHEET 5 H 6 ARG A 480 ASP A 487 -1 N ILE A 486 O VAL A 527 SHEET 6 H 6 THR A 492 GLU A 495 -1 O THR A 494 N ILE A 485 SHEET 1 I 6 GLU A 431 MSE A 432 0 SHEET 2 I 6 THR A 441 GLY A 445 -1 O THR A 443 N GLU A 431 SHEET 3 I 6 TYR A 448 ASN A 452 -1 O LEU A 450 N SER A 442 SHEET 4 I 6 ILE A 526 GLU A 532 -1 O LEU A 528 N VAL A 451 SHEET 5 I 6 ARG A 480 ASP A 487 -1 N ILE A 486 O VAL A 527 SHEET 6 I 6 PHE A 500 GLU A 501 -1 O PHE A 500 N PHE A 481 SHEET 1 J 2 PHE A 460 THR A 462 0 SHEET 2 J 2 GLY A 517 ARG A 519 -1 O VAL A 518 N TRP A 461 SHEET 1 K 2 ASN A 464 PRO A 466 0 SHEET 2 K 2 ARG A 509 PHE A 511 -1 O VAL A 510 N LEU A 465 SHEET 1 L 5 LYS B 25 GLU B 27 0 SHEET 2 L 5 LYS B 99 ILE B 105 1 O ILE B 105 N VAL B 26 SHEET 3 L 5 GLY B 82 SER B 90 -1 N GLY B 82 O VAL B 104 SHEET 4 L 5 LEU B 49 CYS B 55 -1 N VAL B 54 O ARG B 85 SHEET 5 L 5 GLU B 58 GLU B 63 -1 O LYS B 60 N PHE B 53 SHEET 1 M 3 PHE B 32 LYS B 37 0 SHEET 2 M 3 THR B 71 PHE B 76 -1 O PHE B 76 N PHE B 32 SHEET 3 M 3 PHE B 65 TYR B 66 -1 N PHE B 65 O ARG B 73 SHEET 1 N 3 VAL B 115 ASP B 118 0 SHEET 2 N 3 ASN B 122 TYR B 125 -1 O LYS B 124 N LEU B 116 SHEET 3 N 3 ARG B 130 TYR B 131 -1 O TYR B 131 N PHE B 123 SHEET 1 O 5 THR B 136 THR B 137 0 SHEET 2 O 5 LYS B 163 CYS B 167 1 O LYS B 163 N THR B 136 SHEET 3 O 5 GLU B 228 PHE B 234 1 O ILE B 232 N MSE B 166 SHEET 4 O 5 VAL B 269 ALA B 274 1 O SER B 272 N LEU B 233 SHEET 5 O 5 CYS B 305 SER B 306 1 O SER B 306 N MSE B 273 SHEET 1 P 2 PHE B 185 LYS B 192 0 SHEET 2 P 2 GLU B 198 PHE B 207 -1 O GLU B 201 N LYS B 189 SHEET 1 Q 3 VAL B 325 GLN B 328 0 SHEET 2 Q 3 VAL B 350 GLU B 354 1 O ILE B 351 N VAL B 325 SHEET 3 Q 3 TYR B 386 VAL B 387 1 O TYR B 386 N CYS B 352 SHEET 1 R 2 GLU B 358 GLY B 359 0 SHEET 2 R 2 GLU B 391 CYS B 392 1 O CYS B 392 N GLU B 358 SHEET 1 S 6 GLU B 431 MSE B 432 0 SHEET 2 S 6 THR B 441 GLY B 445 -1 O THR B 443 N GLU B 431 SHEET 3 S 6 TYR B 448 ASN B 452 -1 O LEU B 450 N SER B 442 SHEET 4 S 6 ILE B 526 GLU B 532 -1 O LEU B 528 N VAL B 451 SHEET 5 S 6 ARG B 480 ASP B 487 -1 N ILE B 486 O VAL B 527 SHEET 6 S 6 THR B 492 GLU B 495 -1 O THR B 494 N ILE B 485 SHEET 1 T 6 GLU B 431 MSE B 432 0 SHEET 2 T 6 THR B 441 GLY B 445 -1 O THR B 443 N GLU B 431 SHEET 3 T 6 TYR B 448 ASN B 452 -1 O LEU B 450 N SER B 442 SHEET 4 T 6 ILE B 526 GLU B 532 -1 O LEU B 528 N VAL B 451 SHEET 5 T 6 ARG B 480 ASP B 487 -1 N ILE B 486 O VAL B 527 SHEET 6 T 6 PHE B 500 GLU B 501 -1 O PHE B 500 N PHE B 481 SHEET 1 U 2 PHE B 460 THR B 462 0 SHEET 2 U 2 GLY B 517 ARG B 519 -1 O VAL B 518 N TRP B 461 SHEET 1 V 2 ASN B 464 PRO B 466 0 SHEET 2 V 2 ARG B 509 PHE B 511 -1 O VAL B 510 N LEU B 465 LINK C PHE A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N PRO A 78 1555 1555 1.35 LINK C ALA A 94 N MSE A 95 1555 1555 1.35 LINK C MSE A 95 N ASN A 96 1555 1555 1.33 LINK C GLY A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N VAL A 115 1555 1555 1.32 LINK C PRO A 133 N MSE A 134 1555 1555 1.31 LINK C MSE A 134 N GLY A 135 1555 1555 1.30 LINK C HIS A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N LYS A 145 1555 1555 1.32 LINK C ARG A 165 N MSE A 166 1555 1555 1.32 LINK C MSE A 166 N CYS A 167 1555 1555 1.34 LINK C ALA A 246 N MSE A 247 1555 1555 1.34 LINK C MSE A 247 N SER A 248 1555 1555 1.32 LINK C SER A 272 N MSE A 273 1555 1555 1.34 LINK C MSE A 273 N ALA A 274 1555 1555 1.33 LINK C TRP A 318 N MSE A 319 1555 1555 1.33 LINK C MSE A 319 N PRO A 320 1555 1555 1.34 LINK C GLN A 372 N MSE A 373 1555 1555 1.32 LINK C MSE A 373 N THR A 374 1555 1555 1.32 LINK C GLU A 431 N MSE A 432 1555 1555 1.34 LINK C MSE A 432 N ALA A 433 1555 1555 1.33 LINK C ASN A 452 N MSE A 453 1555 1555 1.33 LINK C MSE A 453 N GLY A 454 1555 1555 1.32 LINK C ALA A 490 N MSE A 491 1555 1555 1.32 LINK C MSE A 491 N THR A 492 1555 1555 1.33 LINK C PHE B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N PRO B 78 1555 1555 1.35 LINK C ALA B 94 N MSE B 95 1555 1555 1.34 LINK C MSE B 95 N ASN B 96 1555 1555 1.34 LINK C GLY B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N VAL B 115 1555 1555 1.32 LINK C PRO B 133 N MSE B 134 1555 1555 1.32 LINK C MSE B 134 N GLY B 135 1555 1555 1.30 LINK C HIS B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N LYS B 145 1555 1555 1.33 LINK C ARG B 165 N MSE B 166 1555 1555 1.33 LINK C MSE B 166 N CYS B 167 1555 1555 1.33 LINK C ALA B 246 N MSE B 247 1555 1555 1.34 LINK C MSE B 247 N SER B 248 1555 1555 1.31 LINK C SER B 272 N MSE B 273 1555 1555 1.33 LINK C MSE B 273 N ALA B 274 1555 1555 1.34 LINK C TRP B 318 N MSE B 319 1555 1555 1.34 LINK C MSE B 319 N PRO B 320 1555 1555 1.34 LINK C GLN B 372 N MSE B 373 1555 1555 1.34 LINK C MSE B 373 N THR B 374 1555 1555 1.34 LINK C GLU B 431 N MSE B 432 1555 1555 1.33 LINK C MSE B 432 N ALA B 433 1555 1555 1.34 LINK C ASN B 452 N MSE B 453 1555 1555 1.32 LINK C MSE B 453 N GLY B 454 1555 1555 1.33 LINK C ALA B 490 N MSE B 491 1555 1555 1.33 LINK C MSE B 491 N THR B 492 1555 1555 1.33 LINK NE2 HIS A 112 NI NI A 605 1555 1555 2.24 LINK NE2 HIS A 121 NI NI A 604 1555 1555 2.54 LINK OE2 GLU A 276 NI NI A 602 1555 1555 2.39 LINK OE1 GLN A 328 NI NI A 602 1555 1555 2.60 LINK NE2 HIS A 428 NI NI A 603 1555 1555 2.25 LINK NE2 HIS A 514 NI NI A 606 1555 1555 2.29 LINK O2 UNL A 601 NI NI A 602 1555 1555 2.28 LINK O3 UNL A 601 NI NI A 602 1555 1555 2.31 LINK O1 UNL A 601 NI NI A 602 1555 1555 2.51 LINK O7 UNL A 601 NI NI A 602 1555 1555 2.79 LINK NI NI A 602 O HOH A1334 1555 1555 2.79 LINK NI NI A 603 O HOH A1188 1555 1555 1.81 LINK NI NI A 603 O HOH A1189 1555 1555 1.97 LINK NI NI A 603 O HOH A1190 1555 1555 2.22 LINK NI NI A 603 O HOH A1192 1555 1555 2.51 LINK NI NI A 604 O HOH A1206 1555 1555 2.74 LINK NI NI A 605 O HOH A1123 1555 1555 1.80 LINK NI NI A 605 O HOH A1124 1555 1555 2.28 LINK NI NI A 605 O HOH A1125 1555 1555 2.52 LINK NI NI A 605 O AHOH A1126 1555 1555 2.46 LINK NI NI A 605 O HOH A1127 1555 1555 1.75 LINK NI NI A 605 O HOH A1129 1555 1555 2.52 LINK NI NI A 606 O HOH A1130 1555 1555 2.41 LINK NI NI A 606 O HOH A1131 1555 1555 2.40 LINK NE2 HIS B 112 NI NI B 604 1555 1555 2.25 LINK NE2 HIS B 121 NI NI B 603 1555 1555 2.53 LINK OE2 GLU B 276 NI NI B 602 1555 1555 2.32 LINK OE1 GLN B 328 NI NI B 602 1555 1555 2.70 LINK NE2 HIS B 428 NI NI B 606 1555 1555 2.25 LINK NE2 HIS B 514 NI NI B 605 1555 1555 2.64 LINK O2 UNL B 601 NI NI B 602 1555 1555 2.19 LINK O1 UNL B 601 NI NI B 602 1555 1555 2.53 LINK O7 UNL B 601 NI NI B 602 1555 1555 2.63 LINK NI NI B 602 O HOH B1324 1555 1555 2.45 LINK NI NI B 603 O HOH B1135 1555 1555 2.73 LINK NI NI B 604 O HOH B1152 1555 1555 2.44 LINK NI NI B 604 O HOH B1153 1555 1555 2.60 LINK NI NI B 604 O HOH B1154 1555 1555 2.56 LINK NI NI B 604 O HOH B1155 1555 1555 1.84 LINK NI NI B 604 O HOH B1156 1555 1555 2.63 LINK NI NI B 604 O HOH B1157 1555 1555 2.43 LINK NI NI B 604 O HOH B1180 1555 1555 1.81 LINK NI NI B 605 O HOH B1226 1555 1555 2.26 LINK NI NI B 606 O HOH B1171 1555 1555 2.66 LINK NI NI B 606 O HOH B1172 1555 1555 2.52 LINK NI NI B 606 O HOH B1173 1555 1555 2.51 LINK NI NI B 606 O HOH B1174 1555 1555 2.06 LINK NI NI B 606 O HOH B1181 1555 1555 2.12 SITE 1 AC1 5 GLU A 276 GLN A 328 GLU A 354 HOH A1333 SITE 2 AC1 5 HOH A1334 SITE 1 AC2 6 GLU A 195 HIS A 428 HOH A1188 HOH A1189 SITE 2 AC2 6 HOH A1190 HOH A1192 SITE 1 AC3 6 GLU A 120 HIS A 121 HOH A 950 HOH A1046 SITE 2 AC3 6 HOH A1050 HOH A1206 SITE 1 AC4 7 HIS A 112 HOH A1123 HOH A1124 HOH A1125 SITE 2 AC4 7 HOH A1126 HOH A1127 HOH A1129 SITE 1 AC5 3 HIS A 514 HOH A1130 HOH A1131 SITE 1 AC6 5 ASP A 507 HOH A 745 HOH A 994 ARG B 519 SITE 2 AC6 5 HOH B1230 SITE 1 AC7 4 GLU A 505 ASP A 507 TYR A 508 TYR B 363 SITE 1 AC8 5 ASP A 30 ARG A 31 ARG A 224 HOH A 921 SITE 2 AC8 5 HOH A1253 SITE 1 AC9 5 GLU B 276 GLN B 328 GLU B 354 HOH B1323 SITE 2 AC9 5 HOH B1324 SITE 1 BC1 6 GLU B 120 HIS B 121 HOH B 862 HOH B1133 SITE 2 BC1 6 HOH B1135 HOH B1136 SITE 1 BC2 8 HIS B 112 HOH B1152 HOH B1153 HOH B1154 SITE 2 BC2 8 HOH B1155 HOH B1156 HOH B1157 HOH B1180 SITE 1 BC3 5 ASN B 478 GLU B 501 HIS B 514 HOH B1226 SITE 2 BC3 5 HOH B1227 SITE 1 BC4 7 HIS B 428 HOH B1171 HOH B1172 HOH B1173 SITE 2 BC4 7 HOH B1174 HOH B1175 HOH B1181 SITE 1 BC5 7 PHE B 156 GLY B 157 ALA B 159 PHE B 161 SITE 2 BC5 7 LEU B 225 ARG B 420 HOH B1009 SITE 1 BC6 4 GLU B 505 ASP B 507 TYR B 508 HOH B1197 SITE 1 BC7 6 ARG A 367 HOH A 880 ASP B 507 HOH B 916 SITE 2 BC7 6 HOH B 917 HOH B1195 CRYST1 226.439 67.684 90.066 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011103 0.00000