data_4N10 # _entry.id 4N10 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4N10 RCSB RCSB082615 WWPDB D_1000082615 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4HJM . unspecified PDB 4MZB . unspecified PDB 4MZC . unspecified PDB 1KTE . unspecified PDB 3C1R . unspecified PDB 3CTG . unspecified PDB 4N0Z . unspecified PDB 4N11 . unspecified # _pdbx_database_status.entry_id 4N10 _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-10-03 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yogavel, M.' 1 'Sharma, A.' 2 # _citation.id primary _citation.title 'Interaction of Cisplatin with plasmodium falciparum Glutaredoxin 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yogavel, M.' 1 primary 'Tripathi, T.' 2 primary 'Rahlfs, S.' 3 primary 'Becker, K.' 4 primary 'Sharma, A.' 5 # _cell.length_a 48.652 _cell.length_b 48.652 _cell.length_c 83.234 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4N10 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 4N10 _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Glutaredoxin 12436.457 1 1.20.4.1 ? ? ? 2 non-polymer syn '3[N-MORPHOLINO]PROPANE SULFONIC ACID' 209.263 1 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 non-polymer syn Cisplatin 300.045 3 ? ? ? ? 5 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Glutaredoxin 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAGTSEAVKKWVNKIIEENIIAVFAKTECPYCIKAISILKGYNLNSHMHVENIEKNPDMANIQAYLKELTGKSSVPRIFI NKDVVGGCDDLVKENDEGKLKERLQKLGLVN ; _entity_poly.pdbx_seq_one_letter_code_can ;MAGTSEAVKKWVNKIIEENIIAVFAKTECPYCIKAISILKGYNLNSHMHVENIEKNPDMANIQAYLKELTGKSSVPRIFI NKDVVGGCDDLVKENDEGKLKERLQKLGLVN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLY n 1 4 THR n 1 5 SER n 1 6 GLU n 1 7 ALA n 1 8 VAL n 1 9 LYS n 1 10 LYS n 1 11 TRP n 1 12 VAL n 1 13 ASN n 1 14 LYS n 1 15 ILE n 1 16 ILE n 1 17 GLU n 1 18 GLU n 1 19 ASN n 1 20 ILE n 1 21 ILE n 1 22 ALA n 1 23 VAL n 1 24 PHE n 1 25 ALA n 1 26 LYS n 1 27 THR n 1 28 GLU n 1 29 CYS n 1 30 PRO n 1 31 TYR n 1 32 CYS n 1 33 ILE n 1 34 LYS n 1 35 ALA n 1 36 ILE n 1 37 SER n 1 38 ILE n 1 39 LEU n 1 40 LYS n 1 41 GLY n 1 42 TYR n 1 43 ASN n 1 44 LEU n 1 45 ASN n 1 46 SER n 1 47 HIS n 1 48 MET n 1 49 HIS n 1 50 VAL n 1 51 GLU n 1 52 ASN n 1 53 ILE n 1 54 GLU n 1 55 LYS n 1 56 ASN n 1 57 PRO n 1 58 ASP n 1 59 MET n 1 60 ALA n 1 61 ASN n 1 62 ILE n 1 63 GLN n 1 64 ALA n 1 65 TYR n 1 66 LEU n 1 67 LYS n 1 68 GLU n 1 69 LEU n 1 70 THR n 1 71 GLY n 1 72 LYS n 1 73 SER n 1 74 SER n 1 75 VAL n 1 76 PRO n 1 77 ARG n 1 78 ILE n 1 79 PHE n 1 80 ILE n 1 81 ASN n 1 82 LYS n 1 83 ASP n 1 84 VAL n 1 85 VAL n 1 86 GLY n 1 87 GLY n 1 88 CYS n 1 89 ASP n 1 90 ASP n 1 91 LEU n 1 92 VAL n 1 93 LYS n 1 94 GLU n 1 95 ASN n 1 96 ASP n 1 97 GLU n 1 98 GLY n 1 99 LYS n 1 100 LEU n 1 101 LYS n 1 102 GLU n 1 103 ARG n 1 104 LEU n 1 105 GLN n 1 106 LYS n 1 107 LEU n 1 108 GLY n 1 109 LEU n 1 110 VAL n 1 111 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GRX1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 3D7 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Plasmodium falciparum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 36329 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain M15 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9NLB2_PLAF7 _struct_ref.pdbx_db_accession Q9NLB2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAGTSEAVKKWVNKIIEENIIAVFAKTECPYCIKAISILKGYNLNSHMHVENIEKNPDMANIQAYLKELTGKSSVPRIFI NKDVVGGCDDLVKENDEGKLKERLQKLGLVN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4N10 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NLB2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 111 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 111 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CPT non-polymer . Cisplatin 'diammine(dichloro)platinum' 'Cl2 H6 N2 Pt' 300.045 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 MPO non-polymer . '3[N-MORPHOLINO]PROPANE SULFONIC ACID' ? 'C7 H15 N O4 S' 209.263 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4N10 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.573 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 46.21 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;12.5%(W/V) PEG1000, 12.5%(W/V) PEG3350, 12.5%(V/V) MPD, 0.02M AMINO ACIDS, 0.1M MOPS/HEPES SODIUM,, pH 7.5, vapor diffusion, hanging drop, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2013-07-02 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4N10 _reflns.d_resolution_high 1.870 _reflns.d_resolution_low 50.000 _reflns.number_obs 9906 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_netI_over_sigmaI 18.500 _reflns.pdbx_chi_squared 1.355 _reflns.pdbx_redundancy 16.000 _reflns.percent_possible_obs 99.900 _reflns.B_iso_Wilson_estimate 29.980 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.number_all 9916 _reflns.pdbx_Rsym_value ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.870 1.900 ? ? ? ? 0.423 ? ? 1.039 15.400 ? ? ? 466 ? ? ? ? 100.000 ? ? 1 1 1.900 1.940 ? ? ? ? 0.393 ? ? 1.047 15.700 ? ? ? 499 ? ? ? ? 100.000 ? ? 2 1 1.940 1.970 ? ? ? ? 0.306 ? ? 1.083 16.100 ? ? ? 474 ? ? ? ? 100.000 ? ? 3 1 1.970 2.010 ? ? ? ? 0.242 ? ? 1.104 15.900 ? ? ? 494 ? ? ? ? 100.000 ? ? 4 1 2.010 2.060 ? ? ? ? 0.227 ? ? 1.105 16.200 ? ? ? 464 ? ? ? ? 100.000 ? ? 5 1 2.060 2.110 ? ? ? ? 0.189 ? ? 1.166 16.000 ? ? ? 506 ? ? ? ? 100.000 ? ? 6 1 2.110 2.160 ? ? ? ? 0.144 ? ? 1.177 16.200 ? ? ? 478 ? ? ? ? 100.000 ? ? 7 1 2.160 2.220 ? ? ? ? 0.124 ? ? 1.209 16.200 ? ? ? 498 ? ? ? ? 100.000 ? ? 8 1 2.220 2.280 ? ? ? ? 0.114 ? ? 1.285 16.400 ? ? ? 484 ? ? ? ? 100.000 ? ? 9 1 2.280 2.360 ? ? ? ? 0.101 ? ? 1.340 16.300 ? ? ? 485 ? ? ? ? 100.000 ? ? 10 1 2.360 2.440 ? ? ? ? 0.086 ? ? 1.323 16.300 ? ? ? 494 ? ? ? ? 100.000 ? ? 11 1 2.440 2.540 ? ? ? ? 0.079 ? ? 1.353 16.500 ? ? ? 482 ? ? ? ? 100.000 ? ? 12 1 2.540 2.650 ? ? ? ? 0.066 ? ? 1.438 16.400 ? ? ? 492 ? ? ? ? 100.000 ? ? 13 1 2.650 2.790 ? ? ? ? 0.058 ? ? 1.494 16.500 ? ? ? 490 ? ? ? ? 100.000 ? ? 14 1 2.790 2.970 ? ? ? ? 0.047 ? ? 1.545 16.400 ? ? ? 499 ? ? ? ? 100.000 ? ? 15 1 2.970 3.200 ? ? ? ? 0.040 ? ? 1.603 16.500 ? ? ? 505 ? ? ? ? 100.000 ? ? 16 1 3.200 3.520 ? ? ? ? 0.035 ? ? 1.640 16.100 ? ? ? 503 ? ? ? ? 100.000 ? ? 17 1 3.520 4.030 ? ? ? ? 0.029 ? ? 1.697 16.400 ? ? ? 517 ? ? ? ? 100.000 ? ? 18 1 4.030 5.070 ? ? ? ? 0.028 ? ? 1.628 15.700 ? ? ? 513 ? ? ? ? 100.000 ? ? 19 1 5.070 50.000 ? ? ? ? 0.033 ? ? 1.707 14.100 ? ? ? 563 ? ? ? ? 98.600 ? ? 20 1 # _refine.entry_id 4N10 _refine.ls_d_res_high 1.8700 _refine.ls_d_res_low 23.3490 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_number_reflns_obs 9878 _refine.ls_number_reflns_all 9878 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.1817 _refine.ls_R_factor_obs 0.1817 _refine.ls_R_factor_R_work 0.1796 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2227 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8100 _refine.ls_number_reflns_R_free 475 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 30.6244 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7874 _refine.B_iso_max 88.400 _refine.B_iso_min 17.830 _refine.pdbx_overall_phase_error 26.8300 _refine.occupancy_max 1.000 _refine.occupancy_min 0.350 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 838 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 944 _refine_hist.d_res_high 1.8700 _refine_hist.d_res_low 23.3490 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 983 0.007 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1332 1.129 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 145 0.076 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 175 0.004 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 401 15.012 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.redundancy_reflns_obs 1.8697 2.1401 3 100.0000 3074 . 0.1701 0.2396 . 142 . 3216 . 'X-RAY DIFFRACTION' . 2.1401 2.6957 3 100.0000 3100 . 0.1954 0.2205 . 162 . 3262 . 'X-RAY DIFFRACTION' . 2.6957 23.3510 3 100.0000 3229 . 0.1756 0.2203 . 171 . 3400 . 'X-RAY DIFFRACTION' . # _struct.entry_id 4N10 _struct.title 'Crystal structure of plasmodium falciparum oxidized glutaredoxin 1 (PfGrx1) complexed with cisplatin' _struct.pdbx_descriptor 'Glutaredoxin (E.C.1.20.4.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4N10 _struct_keywords.text 'Glutathione, Active site, TRX FOLD, Redox Enzyme, Pt-SAD, cisplatin, OXIDOREDUCTASE' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ASN A 19 ? SER A 5 ASN A 19 1 ? 15 HELX_P HELX_P2 2 CYS A 29 ? GLY A 41 ? CYS A 29 GLY A 41 1 ? 13 HELX_P HELX_P3 3 TYR A 42 ? ASN A 43 ? TYR A 42 ASN A 43 5 ? 2 HELX_P HELX_P4 4 LEU A 44 ? SER A 46 ? LEU A 44 SER A 46 5 ? 3 HELX_P HELX_P5 5 ASP A 58 ? GLY A 71 ? ASP A 58 GLY A 71 1 ? 14 HELX_P HELX_P6 6 GLY A 87 ? GLU A 97 ? GLY A 87 GLU A 97 1 ? 11 HELX_P HELX_P7 7 GLY A 98 ? LEU A 107 ? GLY A 98 LEU A 107 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 32 SG ? ? A CYS 29 A CYS 32 1_555 ? ? ? ? ? ? ? 1.989 ? metalc1 metalc ? ? A HIS 49 ND1 ? ? ? 1_555 E CPT . PT1 A ? A HIS 49 A CPT 204 1_555 ? ? ? ? ? ? ? 2.205 ? metalc2 metalc ? ? A MET 59 SD ? ? ? 1_555 D CPT . PT1 A ? A MET 59 A CPT 203 1_555 ? ? ? ? ? ? ? 2.219 ? metalc3 metalc ? ? A HIS 49 ND1 ? ? ? 1_555 F CPT . PT1 B ? A HIS 49 A CPT 205 1_555 ? ? ? ? ? ? ? 2.451 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 75 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 75 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 76 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 76 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.51 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 48 ? ASN A 52 ? MET A 48 ASN A 52 A 2 ILE A 21 ? ALA A 25 ? ILE A 21 ALA A 25 A 3 ARG A 77 ? ILE A 80 ? ARG A 77 ILE A 80 A 4 ASP A 83 ? GLY A 86 ? ASP A 83 GLY A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 51 ? O GLU A 51 N ALA A 25 ? N ALA A 25 A 2 3 N ALA A 22 ? N ALA A 22 O PHE A 79 ? O PHE A 79 A 3 4 N ILE A 78 ? N ILE A 78 O GLY A 86 ? O GLY A 86 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE MPO A 201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MPD A 202' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CPT A 203' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CPT A 204' AC5 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE CPT A 205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 SER A 5 ? SER A 5 . ? 5_545 ? 2 AC1 13 LYS A 9 ? LYS A 9 . ? 5_545 ? 3 AC1 13 TYR A 31 ? TYR A 31 . ? 1_555 ? 4 AC1 13 ASN A 61 ? ASN A 61 . ? 5_545 ? 5 AC1 13 TYR A 65 ? TYR A 65 . ? 5_545 ? 6 AC1 13 GLU A 68 ? GLU A 68 . ? 5_545 ? 7 AC1 13 PRO A 76 ? PRO A 76 . ? 1_555 ? 8 AC1 13 GLY A 87 ? GLY A 87 . ? 1_555 ? 9 AC1 13 CYS A 88 ? CYS A 88 . ? 1_555 ? 10 AC1 13 ASP A 89 ? ASP A 89 . ? 1_555 ? 11 AC1 13 HOH G . ? HOH A 301 . ? 1_555 ? 12 AC1 13 HOH G . ? HOH A 316 . ? 1_555 ? 13 AC1 13 HOH G . ? HOH A 331 . ? 1_555 ? 14 AC2 3 ASN A 13 ? ASN A 13 . ? 1_555 ? 15 AC2 3 GLU A 17 ? GLU A 17 . ? 1_555 ? 16 AC2 3 LYS A 82 ? LYS A 82 . ? 1_555 ? 17 AC3 5 MET A 59 ? MET A 59 . ? 1_555 ? 18 AC3 5 GLN A 63 ? GLN A 63 . ? 1_555 ? 19 AC3 5 LYS A 93 ? LYS A 93 . ? 5_445 ? 20 AC3 5 HOH G . ? HOH A 321 . ? 1_555 ? 21 AC3 5 HOH G . ? HOH A 354 . ? 1_555 ? 22 AC4 5 MET A 48 ? MET A 48 . ? 1_555 ? 23 AC4 5 HIS A 49 ? HIS A 49 . ? 1_555 ? 24 AC4 5 LYS A 67 ? LYS A 67 . ? 2_534 ? 25 AC4 5 HOH G . ? HOH A 336 . ? 1_555 ? 26 AC4 5 HOH G . ? HOH A 353 . ? 1_555 ? 27 AC5 9 ASN A 19 ? ASN A 19 . ? 1_555 ? 28 AC5 9 MET A 48 ? MET A 48 . ? 1_555 ? 29 AC5 9 HIS A 49 ? HIS A 49 . ? 1_555 ? 30 AC5 9 VAL A 50 ? VAL A 50 . ? 1_555 ? 31 AC5 9 LYS A 67 ? LYS A 67 . ? 2_534 ? 32 AC5 9 GLU A 68 ? GLU A 68 . ? 2_534 ? 33 AC5 9 GLY A 71 ? GLY A 71 . ? 2_534 ? 34 AC5 9 HOH G . ? HOH A 336 . ? 1_555 ? 35 AC5 9 HOH G . ? HOH A 347 . ? 1_555 ? # _atom_sites.entry_id 4N10 _atom_sites.fract_transf_matrix[1][1] 0.020554 _atom_sites.fract_transf_matrix[1][2] 0.011867 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023734 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012014 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O PT S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLN 105 105 105 GLN GLN A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ASN 111 111 111 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPO 1 201 1 MPO MPO A . C 3 MPD 1 202 1 MPD MPD A . D 4 CPT 1 203 1 CPT CPT A . E 4 CPT 1 204 2 CPT CPT A . F 4 CPT 1 205 3 CPT CPT A . G 5 HOH 1 301 1 HOH HOH A . G 5 HOH 2 302 2 HOH HOH A . G 5 HOH 3 303 3 HOH HOH A . G 5 HOH 4 304 4 HOH HOH A . G 5 HOH 5 305 5 HOH HOH A . G 5 HOH 6 306 6 HOH HOH A . G 5 HOH 7 307 7 HOH HOH A . G 5 HOH 8 308 8 HOH HOH A . G 5 HOH 9 309 9 HOH HOH A . G 5 HOH 10 310 10 HOH HOH A . G 5 HOH 11 311 11 HOH HOH A . G 5 HOH 12 312 12 HOH HOH A . G 5 HOH 13 313 13 HOH HOH A . G 5 HOH 14 314 14 HOH HOH A . G 5 HOH 15 315 15 HOH HOH A . G 5 HOH 16 316 16 HOH HOH A . G 5 HOH 17 317 17 HOH HOH A . G 5 HOH 18 318 18 HOH HOH A . G 5 HOH 19 319 20 HOH HOH A . G 5 HOH 20 320 21 HOH HOH A . G 5 HOH 21 321 22 HOH HOH A . G 5 HOH 22 322 23 HOH HOH A . G 5 HOH 23 323 24 HOH HOH A . G 5 HOH 24 324 25 HOH HOH A . G 5 HOH 25 325 26 HOH HOH A . G 5 HOH 26 326 27 HOH HOH A . G 5 HOH 27 327 28 HOH HOH A . G 5 HOH 28 328 29 HOH HOH A . G 5 HOH 29 329 30 HOH HOH A . G 5 HOH 30 330 31 HOH HOH A . G 5 HOH 31 331 32 HOH HOH A . G 5 HOH 32 332 33 HOH HOH A . G 5 HOH 33 333 34 HOH HOH A . G 5 HOH 34 334 35 HOH HOH A . G 5 HOH 35 335 36 HOH HOH A . G 5 HOH 36 336 38 HOH HOH A . G 5 HOH 37 337 39 HOH HOH A . G 5 HOH 38 338 40 HOH HOH A . G 5 HOH 39 339 41 HOH HOH A . G 5 HOH 40 340 42 HOH HOH A . G 5 HOH 41 341 43 HOH HOH A . G 5 HOH 42 342 44 HOH HOH A . G 5 HOH 43 343 45 HOH HOH A . G 5 HOH 44 344 46 HOH HOH A . G 5 HOH 45 345 47 HOH HOH A . G 5 HOH 46 346 48 HOH HOH A . G 5 HOH 47 347 49 HOH HOH A . G 5 HOH 48 348 50 HOH HOH A . G 5 HOH 49 349 51 HOH HOH A . G 5 HOH 50 350 52 HOH HOH A . G 5 HOH 51 351 53 HOH HOH A . G 5 HOH 52 352 55 HOH HOH A . G 5 HOH 53 353 56 HOH HOH A . G 5 HOH 54 354 57 HOH HOH A . G 5 HOH 55 355 58 HOH HOH A . G 5 HOH 56 356 59 HOH HOH A . G 5 HOH 57 357 60 HOH HOH A . G 5 HOH 58 358 61 HOH HOH A . G 5 HOH 59 359 63 HOH HOH A . G 5 HOH 60 360 64 HOH HOH A . G 5 HOH 61 361 66 HOH HOH A . G 5 HOH 62 362 67 HOH HOH A . G 5 HOH 63 363 68 HOH HOH A . G 5 HOH 64 364 69 HOH HOH A . G 5 HOH 65 365 71 HOH HOH A . G 5 HOH 66 366 75 HOH HOH A . G 5 HOH 67 367 76 HOH HOH A . G 5 HOH 68 368 77 HOH HOH A . G 5 HOH 69 369 80 HOH HOH A . G 5 HOH 70 370 81 HOH HOH A . G 5 HOH 71 371 82 HOH HOH A . G 5 HOH 72 372 83 HOH HOH A . G 5 HOH 73 373 84 HOH HOH A . G 5 HOH 74 374 85 HOH HOH A . G 5 HOH 75 375 86 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 49 ? A HIS 49 ? 1_555 PT1 A E CPT . ? A CPT 204 ? 1_555 N1 A E CPT . ? A CPT 204 ? 1_555 103.7 ? 2 ND1 ? A HIS 49 ? A HIS 49 ? 1_555 PT1 A E CPT . ? A CPT 204 ? 1_555 CL2 A E CPT . ? A CPT 204 ? 1_555 80.1 ? 3 N1 A E CPT . ? A CPT 204 ? 1_555 PT1 A E CPT . ? A CPT 204 ? 1_555 CL2 A E CPT . ? A CPT 204 ? 1_555 169.7 ? 4 ND1 ? A HIS 49 ? A HIS 49 ? 1_555 PT1 A E CPT . ? A CPT 204 ? 1_555 CL1 A E CPT . ? A CPT 204 ? 1_555 175.2 ? 5 N1 A E CPT . ? A CPT 204 ? 1_555 PT1 A E CPT . ? A CPT 204 ? 1_555 CL1 A E CPT . ? A CPT 204 ? 1_555 79.9 ? 6 CL2 A E CPT . ? A CPT 204 ? 1_555 PT1 A E CPT . ? A CPT 204 ? 1_555 CL1 A E CPT . ? A CPT 204 ? 1_555 95.9 ? 7 SD ? A MET 59 ? A MET 59 ? 1_555 PT1 A D CPT . ? A CPT 203 ? 1_555 CL1 A D CPT . ? A CPT 203 ? 1_555 80.9 ? 8 ND1 ? A HIS 49 ? A HIS 49 ? 1_555 PT1 B F CPT . ? A CPT 205 ? 1_555 N1 B F CPT . ? A CPT 205 ? 1_555 100.9 ? 9 ND1 ? A HIS 49 ? A HIS 49 ? 1_555 PT1 B F CPT . ? A CPT 205 ? 1_555 CL2 B F CPT . ? A CPT 205 ? 1_555 157.3 ? 10 N1 B F CPT . ? A CPT 205 ? 1_555 PT1 B F CPT . ? A CPT 205 ? 1_555 CL2 B F CPT . ? A CPT 205 ? 1_555 89.3 ? 11 ND1 ? A HIS 49 ? A HIS 49 ? 1_555 PT1 B F CPT . ? A CPT 205 ? 1_555 CL1 B F CPT . ? A CPT 205 ? 1_555 79.5 ? 12 N1 B F CPT . ? A CPT 205 ? 1_555 PT1 B F CPT . ? A CPT 205 ? 1_555 CL1 B F CPT . ? A CPT 205 ? 1_555 176.6 ? 13 CL2 B F CPT . ? A CPT 205 ? 1_555 PT1 B F CPT . ? A CPT 205 ? 1_555 CL1 B F CPT . ? A CPT 205 ? 1_555 91.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-08 2 'Structure model' 1 1 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.8.1_1168 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 AutoSol . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4N10 _pdbx_entry_details.nonpolymer_details 'CPT A 204 AND CPT A 205 ARE IN ALTERNATE CONFORMATIONS.' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 82 ? ? 70.28 -7.95 2 1 LYS A 82 ? ? 70.28 -6.67 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 6 ? CG ? A GLU 6 CG 2 1 Y 1 A GLU 6 ? CD ? A GLU 6 CD 3 1 Y 1 A GLU 6 ? OE1 ? A GLU 6 OE1 4 1 Y 1 A GLU 6 ? OE2 ? A GLU 6 OE2 5 1 Y 1 A ASN 111 ? CG ? A ASN 111 CG 6 1 Y 1 A ASN 111 ? OD1 ? A ASN 111 OD1 7 1 Y 1 A ASN 111 ? ND2 ? A ASN 111 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A THR 4 ? A THR 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3[N-MORPHOLINO]PROPANE SULFONIC ACID' MPO 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 Cisplatin CPT 5 water HOH #