HEADER TRANSPORT PROTEIN 03-OCT-13 4N17 TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 BURKHOLDERIA AMBIFARIA (BAM_6123), TARGET EFI-510059, WITH BOUND TITLE 3 BETA-D-GALACTURONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA; SOURCE 3 ORGANISM_TAXID: 339670; SOURCE 4 STRAIN: ATCC BAA-244 / AMMD; SOURCE 5 GENE: BAMB_6123; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,S.ZHAO,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,H.J.IMKER,M.P.JACOBSON,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 7 20-SEP-23 4N17 1 HETSYN REVDAT 6 29-JUL-20 4N17 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 04-APR-18 4N17 1 REMARK REVDAT 4 15-NOV-17 4N17 1 REMARK REVDAT 3 14-OCT-15 4N17 1 HETNAM HETSYN REVDAT 2 25-FEB-15 4N17 1 JRNL REVDAT 1 16-OCT-13 4N17 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 42548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.4179 - 3.6971 1.00 2906 174 0.1565 0.1698 REMARK 3 2 3.6971 - 2.9361 1.00 2837 152 0.1528 0.1878 REMARK 3 3 2.9361 - 2.5654 1.00 2807 145 0.1628 0.2418 REMARK 3 4 2.5654 - 2.3311 1.00 2795 147 0.1574 0.1826 REMARK 3 5 2.3311 - 2.1641 1.00 2778 145 0.1595 0.2045 REMARK 3 6 2.1641 - 2.0366 1.00 2756 142 0.1662 0.1737 REMARK 3 7 2.0366 - 1.9346 1.00 2752 160 0.1722 0.1905 REMARK 3 8 1.9346 - 1.8504 1.00 2756 153 0.1755 0.1968 REMARK 3 9 1.8504 - 1.7792 1.00 2765 132 0.1713 0.2193 REMARK 3 10 1.7792 - 1.7178 1.00 2750 155 0.1922 0.2221 REMARK 3 11 1.7178 - 1.6641 1.00 2751 136 0.1967 0.2230 REMARK 3 12 1.6641 - 1.6166 1.00 2768 140 0.2107 0.2524 REMARK 3 13 1.6166 - 1.5740 1.00 2749 135 0.2339 0.3015 REMARK 3 14 1.5740 - 1.5356 0.93 2511 143 0.2562 0.2961 REMARK 3 15 1.5356 - 1.5010 0.62 1730 78 0.2931 0.2832 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2418 REMARK 3 ANGLE : 1.338 3286 REMARK 3 CHIRALITY : 0.071 362 REMARK 3 PLANARITY : 0.007 429 REMARK 3 DIHEDRAL : 13.176 893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9677 27.2549 3.3974 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: 0.1106 REMARK 3 T33: 0.1394 T12: -0.0199 REMARK 3 T13: -0.0187 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 1.7785 L22: 0.8246 REMARK 3 L33: 0.8637 L12: 0.3570 REMARK 3 L13: -0.2483 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: 0.0916 S13: 0.2832 REMARK 3 S21: 0.0052 S22: -0.0514 S23: -0.1149 REMARK 3 S31: -0.2837 S32: 0.1430 S33: 0.0218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6402 24.6770 -2.8012 REMARK 3 T TENSOR REMARK 3 T11: 0.1248 T22: 0.1854 REMARK 3 T33: 0.1586 T12: -0.0494 REMARK 3 T13: -0.0133 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 1.6852 L22: 0.8447 REMARK 3 L33: 0.7952 L12: 0.7094 REMARK 3 L13: 0.4150 L23: 0.3125 REMARK 3 S TENSOR REMARK 3 S11: -0.0794 S12: 0.1089 S13: 0.1090 REMARK 3 S21: -0.0351 S22: -0.0170 S23: -0.2021 REMARK 3 S31: -0.1660 S32: 0.2053 S33: 0.0274 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5107 11.4392 10.7220 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.0720 REMARK 3 T33: 0.0751 T12: 0.0083 REMARK 3 T13: -0.0013 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.7968 L22: 0.6316 REMARK 3 L33: 0.6519 L12: 0.1106 REMARK 3 L13: 0.1023 L23: 0.1490 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.0226 S13: -0.0237 REMARK 3 S21: 0.1475 S22: -0.0397 S23: -0.0323 REMARK 3 S31: 0.2108 S32: 0.0781 S33: 0.0154 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0830 3.0529 7.6539 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1087 REMARK 3 T33: 0.1956 T12: -0.1486 REMARK 3 T13: 0.2349 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.6359 L22: 0.5901 REMARK 3 L33: 0.4534 L12: 0.1631 REMARK 3 L13: -0.2993 L23: -0.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: -0.0432 S13: -0.0776 REMARK 3 S21: 0.4120 S22: -0.1526 S23: 0.4362 REMARK 3 S31: 0.2042 S32: -0.2458 S33: 0.0185 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8587 14.6689 2.0803 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.1918 REMARK 3 T33: 0.1217 T12: -0.0583 REMARK 3 T13: 0.0005 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.6462 L22: 0.8068 REMARK 3 L33: 0.6140 L12: 0.2427 REMARK 3 L13: 0.1929 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.1638 S12: 0.3187 S13: 0.0452 REMARK 3 S21: -0.1380 S22: 0.0676 S23: 0.2174 REMARK 3 S31: 0.0901 S32: -0.3151 S33: 0.0665 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9649 15.6770 7.1716 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.1185 REMARK 3 T33: 0.0775 T12: -0.0101 REMARK 3 T13: 0.0084 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.3743 L22: 0.5303 REMARK 3 L33: 0.5118 L12: 0.1412 REMARK 3 L13: -0.1206 L23: 0.2468 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: 0.1914 S13: 0.0292 REMARK 3 S21: 0.0717 S22: -0.0046 S23: 0.0611 REMARK 3 S31: 0.1085 S32: -0.0257 S33: 0.0362 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1738 25.6232 12.4729 REMARK 3 T TENSOR REMARK 3 T11: 0.0822 T22: 0.0955 REMARK 3 T33: 0.1050 T12: 0.0054 REMARK 3 T13: -0.0094 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.2233 L22: 0.5135 REMARK 3 L33: 0.7261 L12: 0.0631 REMARK 3 L13: -0.1511 L23: 0.0396 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.0132 S13: 0.1153 REMARK 3 S21: 0.0266 S22: -0.0605 S23: 0.0434 REMARK 3 S31: -0.0974 S32: 0.0410 S33: 0.0234 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3209 4.9291 18.6734 REMARK 3 T TENSOR REMARK 3 T11: 0.4966 T22: 0.2066 REMARK 3 T33: 0.1796 T12: -0.0113 REMARK 3 T13: 0.1238 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.9543 L22: 1.1098 REMARK 3 L33: 0.1322 L12: -0.6515 REMARK 3 L13: -0.0128 L23: 0.3102 REMARK 3 S TENSOR REMARK 3 S11: -0.1759 S12: -0.1961 S13: -0.0823 REMARK 3 S21: 0.5331 S22: -0.0158 S23: 0.2329 REMARK 3 S31: 0.5069 S32: -0.1117 S33: -0.0825 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5768 1.4826 21.6581 REMARK 3 T TENSOR REMARK 3 T11: 0.3125 T22: 0.1276 REMARK 3 T33: 0.1150 T12: -0.0189 REMARK 3 T13: -0.0847 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.4573 L22: 1.2529 REMARK 3 L33: 2.0721 L12: -0.7618 REMARK 3 L13: -0.0776 L23: -0.5636 REMARK 3 S TENSOR REMARK 3 S11: 0.1760 S12: 0.1456 S13: -0.1026 REMARK 3 S21: -0.2539 S22: -0.0996 S23: 0.0659 REMARK 3 S31: 0.1644 S32: 0.1112 S33: 0.0662 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 4LNM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 59.1 MG/ML PROTEIN IN 10 MM HEPES, PH REMARK 280 7.5, 5 MM DTT, 10 MM D-GALACTURONIC ACID, RESERVOIR: 0.2 M REMARK 280 CALCIUM ACETATE, 0.1 M MES, PH 6.0, 20% W/V PEG8000 (MCSG1 B6), REMARK 280 CRYOPROTECTION: 4:1 50% W/V PEG3350:RESERVOIR, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.07600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.68450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.07600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.68450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.86000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.07600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.68450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.86000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.07600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.68450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 533 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 754 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 HIS A 3 REMARK 465 ARG A 4 REMARK 465 PHE A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 THR A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 PHE A 20 REMARK 465 ALA A 21 REMARK 465 MET A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 ALA A 26 REMARK 465 LYS A 328 REMARK 465 ALA A 329 REMARK 465 GLU A 330 REMARK 465 ASN A 331 REMARK 465 LEU A 332 REMARK 465 TYR A 333 REMARK 465 PHE A 334 REMARK 465 GLN A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 VAL A 301 CG1 CG2 REMARK 470 GLN A 319 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 152 HD1 HIS A 219 1.20 REMARK 500 HZ3 LYS A 154 O HOH A 810 1.53 REMARK 500 HH12 ARG A 297 O HOH A 658 1.56 REMARK 500 HZ1 LYS A 167 O HOH A 651 1.60 REMARK 500 O HOH A 687 O HOH A 778 1.81 REMARK 500 NZ LYS A 154 O HOH A 810 2.02 REMARK 500 O HOH A 743 O HOH A 785 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 302 O HOH A 718 4556 1.46 REMARK 500 O HOH A 634 O HOH A 756 4556 2.00 REMARK 500 O HOH A 700 O HOH A 765 6555 2.03 REMARK 500 O HOH A 802 O HOH A 802 4556 2.04 REMARK 500 NZ LYS A 302 O HOH A 718 4556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 -179.87 -173.29 REMARK 500 ALA A 153 -168.18 -170.55 REMARK 500 ASN A 209 175.72 178.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 322 OD1 REMARK 620 2 HOH A 539 O 94.2 REMARK 620 3 HOH A 549 O 90.7 171.8 REMARK 620 4 HOH A 553 O 83.2 87.3 86.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 675 O REMARK 620 2 HOH A 709 O 86.6 REMARK 620 3 HOH A 824 O 86.9 93.1 REMARK 620 4 HOH A 825 O 177.8 92.0 94.9 REMARK 620 5 HOH A 826 O 93.6 176.2 90.8 87.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N15 RELATED DB: PDB REMARK 900 RELATED ID: EFI-510059 RELATED DB: TARGETTRACK DBREF 4N17 A 1 328 UNP Q0B2F6 Q0B2F6_BURCM 1 328 SEQADV 4N17 ALA A 329 UNP Q0B2F6 EXPRESSION TAG SEQADV 4N17 GLU A 330 UNP Q0B2F6 EXPRESSION TAG SEQADV 4N17 ASN A 331 UNP Q0B2F6 EXPRESSION TAG SEQADV 4N17 LEU A 332 UNP Q0B2F6 EXPRESSION TAG SEQADV 4N17 TYR A 333 UNP Q0B2F6 EXPRESSION TAG SEQADV 4N17 PHE A 334 UNP Q0B2F6 EXPRESSION TAG SEQADV 4N17 GLN A 335 UNP Q0B2F6 EXPRESSION TAG SEQRES 1 A 335 MET THR HIS ARG PHE PRO ARG SER ARG THR ALA LEU ALA SEQRES 2 A 335 VAL ALA LEU MET ALA GLY PHE ALA MET SER ALA GLN ALA SEQRES 3 A 335 ARG VAL PHE ARG SER ALA ASP VAL HIS GLY ASP SER PHE SEQRES 4 A 335 PRO THR ASN MET ALA VAL LYS PHE MET GLY ASP GLU LEU SEQRES 5 A 335 SER LYS LEU THR GLY GLY LYS ASP SER ILE LYS VAL PHE SEQRES 6 A 335 GLY ASN SER ALA LEU GLY SER GLU LYS ASP THR VAL ASP SEQRES 7 A 335 GLN VAL ARG ILE GLY ALA ILE ASP MET ALA ARG VAL ASN SEQRES 8 A 335 GLY ALA SER PHE ASN GLU ILE VAL PRO GLU SER LEU ILE SEQRES 9 A 335 PRO SER PHE PRO PHE LEU PHE ARG ASP VAL ASP HIS PHE SEQRES 10 A 335 ARG LYS ALA MET TYR GLY PRO ALA GLY GLN LYS ILE LEU SEQRES 11 A 335 ASP ALA PHE ALA ALA LYS GLY MET ILE ALA LEU THR PHE SEQRES 12 A 335 TYR GLU SER GLY ALA ARG SER ILE TYR ALA LYS ARG PRO SEQRES 13 A 335 VAL ARG THR PRO ALA ASP MET LYS GLY LEU LYS VAL ARG SEQRES 14 A 335 VAL GLN PRO SER ASP LEU MET VAL ASP GLU ILE ARG ALA SEQRES 15 A 335 MET GLY GLY THR PRO THR PRO MET PRO PHE ALA GLU VAL SEQRES 16 A 335 TYR THR GLY LEU LYS THR GLY LEU VAL ASP ALA ALA GLU SEQRES 17 A 335 ASN ASN LEU PRO SER TYR GLU GLU THR LYS HIS PHE GLU SEQRES 18 A 335 VAL ALA PRO ASP TYR SER GLU THR GLN HIS ALA MET THR SEQRES 19 A 335 PRO GLU VAL LEU VAL PHE SER LYS LYS ILE TRP ASP THR SEQRES 20 A 335 LEU SER PRO GLN GLU GLN ALA ALA ILE ARG LYS ALA ALA SEQRES 21 A 335 ALA ASP SER VAL PRO TYR TYR GLN LYS LEU TRP THR ALA SEQRES 22 A 335 ARG GLU ALA SER ALA GLN GLN ALA VAL THR LYS GLY GLY SEQRES 23 A 335 ALA ASN ILE LEU PRO ALA ALA GLN VAL ASP ARG ALA ALA SEQRES 24 A 335 PHE VAL LYS ALA MET GLN PRO LEU TRP THR LYS TYR GLU SEQRES 25 A 335 LYS THR PRO GLN MET LYS GLN ILE VAL ASP GLU ILE GLU SEQRES 26 A 335 ALA THR LYS ALA GLU ASN LEU TYR PHE GLN HET GTR A 401 13 HET CL A 402 1 HET CA A 403 1 HET CA A 404 1 HETNAM GTR BETA-D-GALACTOPYRANURONIC ACID HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN GTR BETA-D-GALACTURONIC ACID; D-GALACTURONIC ACID; HETSYN 2 GTR GALACTURONIC ACID FORMUL 2 GTR C6 H10 O7 FORMUL 3 CL CL 1- FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *326(H2 O) HELIX 1 1 PHE A 39 THR A 56 1 18 HELIX 2 2 SER A 72 ILE A 82 1 11 HELIX 3 3 ALA A 93 ASN A 96 5 4 HELIX 4 4 VAL A 99 PHE A 107 5 9 HELIX 5 5 ASP A 113 TYR A 122 1 10 HELIX 6 6 GLY A 123 ALA A 132 1 10 HELIX 7 7 PHE A 133 LYS A 136 5 4 HELIX 8 8 THR A 159 LYS A 164 1 6 HELIX 9 9 SER A 173 MET A 183 1 11 HELIX 10 10 PRO A 191 ALA A 193 5 3 HELIX 11 11 GLU A 194 THR A 201 1 8 HELIX 12 12 ASN A 210 THR A 217 1 8 HELIX 13 13 LYS A 218 ALA A 223 1 6 HELIX 14 14 LYS A 242 ASP A 246 1 5 HELIX 15 15 SER A 249 GLY A 285 1 37 HELIX 16 16 PRO A 291 VAL A 295 5 5 HELIX 17 17 ASP A 296 GLN A 305 1 10 HELIX 18 18 GLN A 305 GLU A 312 1 8 HELIX 19 19 THR A 314 ALA A 326 1 13 SHEET 1 A 5 SER A 61 PHE A 65 0 SHEET 2 A 5 VAL A 28 ALA A 32 1 N PHE A 29 O SER A 61 SHEET 3 A 5 MET A 87 ASN A 91 1 O ARG A 89 N ALA A 32 SHEET 4 A 5 GLU A 236 SER A 241 -1 O VAL A 237 N VAL A 90 SHEET 5 A 5 MET A 138 TYR A 144 -1 N TYR A 144 O GLU A 236 SHEET 1 B 4 ALA A 206 ASN A 209 0 SHEET 2 B 4 ARG A 149 ALA A 153 -1 N TYR A 152 O ALA A 207 SHEET 3 B 4 ASP A 225 ALA A 232 -1 O ALA A 232 N ARG A 149 SHEET 4 B 4 ASN A 288 LEU A 290 1 O LEU A 290 N TYR A 226 SHEET 1 C 2 LYS A 167 VAL A 170 0 SHEET 2 C 2 THR A 186 PRO A 189 1 O THR A 186 N VAL A 168 LINK OD1 ASP A 322 CA CA A 403 1555 1555 2.11 LINK CA CA A 403 O HOH A 539 1555 1555 2.21 LINK CA CA A 403 O HOH A 549 1555 1555 2.11 LINK CA CA A 403 O HOH A 553 1555 1555 2.21 LINK CA CA A 404 O HOH A 675 1555 1555 2.22 LINK CA CA A 404 O HOH A 709 1555 1555 2.35 LINK CA CA A 404 O HOH A 824 1555 1555 2.20 LINK CA CA A 404 O HOH A 825 1555 1555 2.28 LINK CA CA A 404 O HOH A 826 1555 1555 2.47 CRYST1 96.152 101.369 55.720 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009865 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017947 0.00000