HEADER IMMUNE SYSTEM/HYDROLASE 03-OCT-13 4N1C TITLE STRUCTURAL EVIDENCE FOR ANTIGEN RECEPTOR EVOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN VARIABLE LIGHT CHAIN DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LYSOZYME C; COMPND 7 CHAIN: C; COMPND 8 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 9 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET12A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 12 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 13 ORGANISM_TAXID: 9031; SOURCE 14 OTHER_DETAILS: PURIFIED FROM HEN EGGS WHITES KEYWDS IMMUNOGLOBULIN VARIABLE DOMAIN HOMODIMER, PROTEIN-PROTEIN COMPLEX, IG KEYWDS 2 DOMAIN, IMMUNE SYSTEM-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.B.LANGLEY,R.ROUET,B.ROOME,D.STOCK,D.CHRIST REVDAT 4 20-SEP-23 4N1C 1 REMARK REVDAT 3 18-APR-18 4N1C 1 JRNL REVDAT 2 29-MAR-17 4N1C 1 JRNL REVDAT 1 29-OCT-14 4N1C 0 JRNL AUTH R.ROUET,D.B.LANGLEY,P.SCHOFIELD,M.CHRISTIE,B.ROOME, JRNL AUTH 2 B.T.POREBSKI,A.M.BUCKLE,B.E.CLIFTON,C.J.JACKSON,D.STOCK, JRNL AUTH 3 D.CHRIST JRNL TITL STRUCTURAL RECONSTRUCTION OF PROTEIN ANCESTRY. JRNL REF PROC. NATL. ACAD. SCI. V. 114 3897 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28356519 JRNL DOI 10.1073/PNAS.1613477114 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2752 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.97000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.836 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2504 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1591 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3422 ; 1.385 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3878 ; 0.876 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 6.714 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;34.927 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;11.812 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 377 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2889 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 87.5447 1.8603 -2.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0458 REMARK 3 T33: 0.0270 T12: -0.0104 REMARK 3 T13: -0.0080 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.7373 L22: 1.7457 REMARK 3 L33: 0.5760 L12: 0.5057 REMARK 3 L13: 0.0075 L23: -0.3074 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: 0.0124 S13: 0.0169 REMARK 3 S21: -0.0515 S22: 0.0567 S23: 0.1854 REMARK 3 S31: -0.0574 S32: 0.0374 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 92.1171 -19.0930 3.2611 REMARK 3 T TENSOR REMARK 3 T11: 0.0875 T22: 0.0393 REMARK 3 T33: 0.0229 T12: 0.0229 REMARK 3 T13: -0.0063 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.0733 L22: 1.0911 REMARK 3 L33: 1.0153 L12: -0.5658 REMARK 3 L13: 0.0855 L23: -0.3203 REMARK 3 S TENSOR REMARK 3 S11: 0.0423 S12: 0.0502 S13: -0.0603 REMARK 3 S21: -0.0158 S22: -0.0213 S23: 0.1447 REMARK 3 S31: 0.1474 S32: 0.0954 S33: -0.0210 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 127 REMARK 3 ORIGIN FOR THE GROUP (A): 61.8117 -19.0889 -1.3754 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.0112 REMARK 3 T33: 0.2372 T12: -0.0026 REMARK 3 T13: -0.0034 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.6078 L22: 0.1433 REMARK 3 L33: 1.4650 L12: -0.0926 REMARK 3 L13: 0.5599 L23: 0.3672 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: -0.0208 S13: -0.1657 REMARK 3 S21: -0.0066 S22: -0.0230 S23: 0.0922 REMARK 3 S31: -0.0193 S32: -0.0974 S33: 0.0435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 4N1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 3.3.16 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 109.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : 0.57500 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRIES 3UPA AND 1ZVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BISTRIS REMARK 280 (PH 5.5), 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.33000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.33000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 108 REMARK 465 ALA A 109 REMARK 465 LYS B 107 REMARK 465 ARG B 108 REMARK 465 ALA B 109 REMARK 465 ASP C 66 REMARK 465 GLY C 67 REMARK 465 ARG C 68 REMARK 465 THR C 69 REMARK 465 PRO C 70 REMARK 465 GLY C 71 REMARK 465 SER C 72 REMARK 465 ARG C 73 REMARK 465 ASP C 87 REMARK 465 ILE C 88 REMARK 465 ARG C 128 REMARK 465 LEU C 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 SER A 7 OG REMARK 470 SER A 10 OG REMARK 470 VAL A 19 CG1 CG2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 ILE A 106 CG1 CG2 CD1 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 470 SER B 12 OG REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 SER B 56 OG REMARK 470 SER B 60 OG REMARK 470 PHE B 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 ILE B 106 CG1 CG2 CD1 REMARK 470 VAL C 2 CG1 CG2 REMARK 470 GLU C 7 CG CD OE1 OE2 REMARK 470 ARG C 21 CG CD NE CZ NH1 NH2 REMARK 470 THR C 40 OG1 CG2 REMARK 470 THR C 43 OG1 CG2 REMARK 470 ASN C 44 CG OD1 ND2 REMARK 470 THR C 47 OG1 CG2 REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 65 CG OD1 ND2 REMARK 470 ASN C 74 CG OD1 ND2 REMARK 470 LEU C 75 CG CD1 CD2 REMARK 470 ASN C 77 CG OD1 ND2 REMARK 470 ILE C 78 CG1 CG2 CD1 REMARK 470 SER C 85 OG REMARK 470 SER C 86 OG REMARK 470 LYS C 97 CG CD CE NZ REMARK 470 VAL C 99 CG1 CG2 REMARK 470 ASP C 101 CG OD1 OD2 REMARK 470 ASN C 103 CG OD1 ND2 REMARK 470 ARG C 125 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 -116.53 52.06 REMARK 500 ASP A 51 -28.33 70.69 REMARK 500 ALA A 84 179.48 179.44 REMARK 500 ALA B 30 -119.99 51.46 REMARK 500 SER B 50 -143.08 48.33 REMARK 500 SER B 77 78.93 32.32 REMARK 500 ALA B 84 170.52 178.82 REMARK 500 LEU C 84 74.31 -112.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N1E RELATED DB: PDB DBREF 4N1C C 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 4N1C A 1 109 PDB 4N1C 4N1C 1 109 DBREF 4N1C B 1 109 PDB 4N1C 4N1C 1 109 SEQRES 1 A 109 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 A 109 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 A 109 GLN ASP ILE ALA SER ASP LEU ASN TRP TYR GLN GLN LYS SEQRES 4 A 109 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ASP SER SEQRES 5 A 109 TYR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 109 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 A 109 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 A 109 TYR MET ILE PRO SER THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 A 109 GLU ILE LYS ARG ALA SEQRES 1 B 109 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 B 109 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 B 109 GLN ASP ILE ALA SER ASP LEU ASN TRP TYR GLN GLN LYS SEQRES 4 B 109 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ASP SER SEQRES 5 B 109 TYR LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 109 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 109 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 B 109 TYR MET ILE PRO SER THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 B 109 GLU ILE LYS ARG ALA SEQRES 1 C 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 C 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 C 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 C 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 C 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 C 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 C 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 C 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 C 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 C 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 4 HOH *154(H2 O) HELIX 1 1 GLN A 79 PHE A 83 5 5 HELIX 2 2 GLN B 79 PHE B 83 5 5 HELIX 3 3 GLY C 4 HIS C 15 1 12 HELIX 4 4 ASN C 19 TYR C 23 5 5 HELIX 5 5 SER C 24 ASN C 37 1 14 HELIX 6 6 PRO C 79 LEU C 84 5 6 HELIX 7 7 ALA C 90 SER C 100 1 11 HELIX 8 8 ASN C 103 ALA C 107 5 5 HELIX 9 9 TRP C 108 CYS C 115 1 8 HELIX 10 10 ASP C 119 ARG C 125 5 7 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O THR A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 B 6 SER A 10 ALA A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N GLN A 38 O THR A 85 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 TYR A 53 LEU A 54 -1 O TYR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 ALA A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O VAL A 104 SHEET 4 C 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 MET B 4 SER B 7 0 SHEET 2 D 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 D 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 D 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 E 6 SER B 10 SER B 12 0 SHEET 2 E 6 THR B 102 GLU B 105 1 O GLU B 105 N LEU B 11 SHEET 3 E 6 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 E 6 LEU B 33 GLN B 38 -1 N ASN B 34 O GLN B 89 SHEET 5 E 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 E 6 TYR B 53 LEU B 54 -1 O TYR B 53 N TYR B 49 SHEET 1 F 4 SER B 10 SER B 12 0 SHEET 2 F 4 THR B 102 GLU B 105 1 O GLU B 105 N LEU B 11 SHEET 3 F 4 ALA B 84 GLN B 90 -1 N ALA B 84 O VAL B 104 SHEET 4 F 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 G 3 THR C 43 ARG C 45 0 SHEET 2 G 3 THR C 51 TYR C 53 -1 O ASP C 52 N ASN C 44 SHEET 3 G 3 ILE C 58 ASN C 59 -1 O ILE C 58 N TYR C 53 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.05 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.03 SSBOND 3 CYS C 6 CYS C 127 1555 1555 2.05 SSBOND 4 CYS C 30 CYS C 115 1555 1555 2.05 SSBOND 5 CYS C 64 CYS C 80 1555 1555 2.06 SSBOND 6 CYS C 76 CYS C 94 1555 1555 2.04 CISPEP 1 SER A 7 PRO A 8 0 -12.13 CISPEP 2 ILE A 94 PRO A 95 0 8.95 CISPEP 3 SER B 7 PRO B 8 0 -4.48 CISPEP 4 ILE B 94 PRO B 95 0 1.80 CRYST1 126.789 126.789 40.660 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007887 0.004554 0.000000 0.00000 SCALE2 0.000000 0.009107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024594 0.00000