data_4N1V # _entry.id 4N1V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.366 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4N1V pdb_00004n1v 10.2210/pdb4n1v/pdb RCSB RCSB082646 ? ? WWPDB D_1000082646 ? ? # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2023-03-08 _pdbx_database_PDB_obs_spr.pdb_id 5CVX _pdbx_database_PDB_obs_spr.replace_pdb_id 4N1V _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4N1V _pdbx_database_status.recvd_initial_deposition_date 2013-10-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boyko, K.M.' 1 'Gorbacheva, M.A.' 2 'Rakitina, T.V.' 3 'Korgenevsky, D.A.' 4 'Kamashev, D.E.' 5 'Vanyushkina, A.A.' 6 'Lipkin, A.V.' 7 'Popov, V.O.' 8 # _citation.id primary _citation.title 'Structure of micoplasma DNA binding HU protein.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boyko, K.M.' 1 ? primary 'Gorbacheva, M.A.' 2 ? primary 'Rakitina, T.V.' 3 ? primary 'Korgenevsky, D.A.' 4 ? primary 'Kamashev, D.E.' 5 ? primary 'Vanyushkina, A.A.' 6 ? primary 'Lipkin, A.V.' 7 ? primary 'Popov, V.O.' 8 ? # _cell.entry_id 4N1V _cell.length_a 57.760 _cell.length_b 39.530 _cell.length_c 39.280 _cell.angle_alpha 90.00 _cell.angle_beta 108.33 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4N1V _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-binding protein HU-beta' 11039.579 1 ? ? ? ? 2 water nat water 18.015 114 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHHMSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAARDGRNPSTGETIKIP ASKSAKFKAGKQLKTDLNNN ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHMSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAARDGRNPSTGETIKIP ASKSAKFKAGKQLKTDLNNN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 MET n 1 8 SER n 1 9 LYS n 1 10 LYS n 1 11 GLU n 1 12 LEU n 1 13 ALA n 1 14 ALA n 1 15 GLN n 1 16 ILE n 1 17 ALA n 1 18 GLU n 1 19 LYS n 1 20 PHE n 1 21 THR n 1 22 ASP n 1 23 VAL n 1 24 LEU n 1 25 SER n 1 26 LYS n 1 27 THR n 1 28 HIS n 1 29 ALA n 1 30 GLU n 1 31 GLU n 1 32 ILE n 1 33 THR n 1 34 ASN n 1 35 PHE n 1 36 VAL n 1 37 PHE n 1 38 ASP n 1 39 HIS n 1 40 ILE n 1 41 LYS n 1 42 LYS n 1 43 ALA n 1 44 LEU n 1 45 VAL n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 GLU n 1 50 VAL n 1 51 SER n 1 52 ILE n 1 53 ALA n 1 54 GLY n 1 55 PHE n 1 56 GLY n 1 57 LYS n 1 58 PHE n 1 59 ALA n 1 60 VAL n 1 61 THR n 1 62 GLU n 1 63 ARG n 1 64 ALA n 1 65 ALA n 1 66 ARG n 1 67 ASP n 1 68 GLY n 1 69 ARG n 1 70 ASN n 1 71 PRO n 1 72 SER n 1 73 THR n 1 74 GLY n 1 75 GLU n 1 76 THR n 1 77 ILE n 1 78 LYS n 1 79 ILE n 1 80 PRO n 1 81 ALA n 1 82 SER n 1 83 LYS n 1 84 SER n 1 85 ALA n 1 86 LYS n 1 87 PHE n 1 88 LYS n 1 89 ALA n 1 90 GLY n 1 91 LYS n 1 92 GLN n 1 93 LEU n 1 94 LYS n 1 95 THR n 1 96 ASP n 1 97 LEU n 1 98 ASN n 1 99 ASN n 1 100 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SPM_00565 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain KC3 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Spiroplasma melliferum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 570509 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus (DE3) - ripl' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET24 modified' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code G9XX52_SPIME _struct_ref.pdbx_db_accession G9XX52 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAARDGRNPSTGETIKIPASKSAK FKAGKQLKTDLNNN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4N1V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 100 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession G9XX52 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4N1V HIS A 1 ? UNP G9XX52 ? ? 'expression tag' -5 1 1 4N1V HIS A 2 ? UNP G9XX52 ? ? 'expression tag' -4 2 1 4N1V HIS A 3 ? UNP G9XX52 ? ? 'expression tag' -3 3 1 4N1V HIS A 4 ? UNP G9XX52 ? ? 'expression tag' -2 4 1 4N1V HIS A 5 ? UNP G9XX52 ? ? 'expression tag' -1 5 1 4N1V HIS A 6 ? UNP G9XX52 ? ? 'expression tag' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4N1V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_percent_sol 36.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.1M Tris, 35% PEG400, 5% Glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 273K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2012-11-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.984 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'KURCHATOV SNC BEAMLINE K4.4' _diffrn_source.pdbx_synchrotron_site 'KURCHATOV SNC' _diffrn_source.pdbx_synchrotron_beamline K4.4 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.984 # _reflns.entry_id 4N1V _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 40 _reflns.d_resolution_high 1.36 _reflns.number_obs 17186 _reflns.number_all 18289 _reflns.percent_possible_obs 93.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.36 _reflns_shell.d_res_low 1.44 _reflns_shell.percent_possible_all 81.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.75 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2368 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4N1V _refine.ls_number_reflns_obs 16700 _refine.ls_number_reflns_all 26187 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.77 _refine.ls_d_res_high 1.36 _refine.ls_percent_reflns_obs 97.07 _refine.ls_R_factor_obs 0.15061 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14722 _refine.ls_R_factor_R_free 0.21405 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 899 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.B_iso_mean 17.698 _refine.aniso_B[1][1] 0.08 _refine.aniso_B[2][2] -0.48 _refine.aniso_B[3][3] 0.33 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.01 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT.' _refine.pdbx_starting_model 1HUU _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.061 _refine.pdbx_overall_ESU_R_Free 0.066 _refine.overall_SU_ML 0.044 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.405 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 683 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 114 _refine_hist.number_atoms_total 797 _refine_hist.d_res_high 1.36 _refine_hist.d_res_low 19.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.019 0.019 ? 707 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 374 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.036 1.949 ? 942 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.026 3.000 ? 889 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7.369 5.000 ? 91 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 37.758 25.517 ? 29 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.574 15.000 ? 134 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10.299 15.000 ? 2 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.141 0.200 ? 106 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.010 0.020 ? 714 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 112 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 4.391 1.811 ? 370 ? 'X-RAY DIFFRACTION' r_mcbond_other 4.385 1.781 ? 365 ? 'X-RAY DIFFRACTION' r_mcangle_it 4.355 2.700 ? 459 ? 'X-RAY DIFFRACTION' r_mcangle_other 4.350 2.675 ? 456 ? 'X-RAY DIFFRACTION' r_scbond_it 4.352 2.037 ? 337 ? 'X-RAY DIFFRACTION' r_scbond_other 4.350 2.029 ? 334 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 4.665 2.891 ? 481 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 5.172 15.555 ? 915 ? 'X-RAY DIFFRACTION' r_long_range_B_other 5.017 14.810 ? 871 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 5.813 3.000 ? 1080 ? 'X-RAY DIFFRACTION' r_sphericity_free 32.224 5.000 ? 33 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 16.099 5.000 ? 1156 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.361 _refine_ls_shell.d_res_low 1.397 _refine_ls_shell.number_reflns_R_work 889 _refine_ls_shell.R_factor_R_work 0.259 _refine_ls_shell.percent_reflns_obs 70.57 _refine_ls_shell.R_factor_R_free 0.384 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 46 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4N1V _struct.title 'Structure of DNA-binding protein HU from micoplasma Spiroplasma melliferum' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4N1V _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA Binding, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;The second part of the dimer is generated by the two fold axis: -x, y, -z-1. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? PHE A 20 ? SER A 2 PHE A 14 1 ? 13 HELX_P HELX_P2 2 SER A 25 ? ALA A 46 ? SER A 19 ALA A 40 1 ? 22 HELX_P HELX_P3 3 GLY A 90 ? ASN A 98 ? GLY A 84 ASN A 92 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 73 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 67 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 74 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 68 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -8.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 50 ? ILE A 52 ? VAL A 44 ILE A 46 A 2 GLY A 56 ? ARG A 63 ? GLY A 50 ARG A 57 A 3 SER A 82 ? ALA A 89 ? SER A 76 ALA A 83 B 1 ARG A 66 ? ARG A 69 ? ARG A 60 ARG A 63 B 2 THR A 76 ? ILE A 79 ? THR A 70 ILE A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 52 ? N ILE A 46 O GLY A 56 ? O GLY A 50 A 2 3 N ALA A 59 ? N ALA A 53 O LYS A 86 ? O LYS A 80 B 1 2 N ARG A 66 ? N ARG A 60 O ILE A 79 ? O ILE A 73 # _database_PDB_matrix.entry_id 4N1V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4N1V _atom_sites.fract_transf_matrix[1][1] 0.017313 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005734 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025297 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026818 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -5 ? ? ? A . n A 1 2 HIS 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 HIS 4 -2 ? ? ? A . n A 1 5 HIS 5 -1 -1 HIS HIS A . n A 1 6 HIS 6 0 0 HIS HIS A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 SER 8 2 2 SER SER A . n A 1 9 LYS 9 3 3 LYS LYS A . n A 1 10 LYS 10 4 4 LYS LYS A . n A 1 11 GLU 11 5 5 GLU GLU A . n A 1 12 LEU 12 6 6 LEU LEU A . n A 1 13 ALA 13 7 7 ALA ALA A . n A 1 14 ALA 14 8 8 ALA ALA A . n A 1 15 GLN 15 9 9 GLN GLN A . n A 1 16 ILE 16 10 10 ILE ILE A . n A 1 17 ALA 17 11 11 ALA ALA A . n A 1 18 GLU 18 12 12 GLU GLU A . n A 1 19 LYS 19 13 13 LYS LYS A . n A 1 20 PHE 20 14 14 PHE PHE A . n A 1 21 THR 21 15 15 THR THR A . n A 1 22 ASP 22 16 16 ASP ASP A . n A 1 23 VAL 23 17 17 VAL VAL A . n A 1 24 LEU 24 18 18 LEU LEU A . n A 1 25 SER 25 19 19 SER SER A . n A 1 26 LYS 26 20 20 LYS LYS A . n A 1 27 THR 27 21 21 THR THR A . n A 1 28 HIS 28 22 22 HIS HIS A . n A 1 29 ALA 29 23 23 ALA ALA A . n A 1 30 GLU 30 24 24 GLU GLU A . n A 1 31 GLU 31 25 25 GLU GLU A . n A 1 32 ILE 32 26 26 ILE ILE A . n A 1 33 THR 33 27 27 THR THR A . n A 1 34 ASN 34 28 28 ASN ASN A . n A 1 35 PHE 35 29 29 PHE PHE A . n A 1 36 VAL 36 30 30 VAL VAL A . n A 1 37 PHE 37 31 31 PHE PHE A . n A 1 38 ASP 38 32 32 ASP ASP A . n A 1 39 HIS 39 33 33 HIS HIS A . n A 1 40 ILE 40 34 34 ILE ILE A . n A 1 41 LYS 41 35 35 LYS LYS A . n A 1 42 LYS 42 36 36 LYS LYS A . n A 1 43 ALA 43 37 37 ALA ALA A . n A 1 44 LEU 44 38 38 LEU LEU A . n A 1 45 VAL 45 39 39 VAL VAL A . n A 1 46 ALA 46 40 40 ALA ALA A . n A 1 47 GLY 47 41 41 GLY GLY A . n A 1 48 LYS 48 42 42 LYS LYS A . n A 1 49 GLU 49 43 43 GLU GLU A . n A 1 50 VAL 50 44 44 VAL VAL A . n A 1 51 SER 51 45 45 SER SER A . n A 1 52 ILE 52 46 46 ILE ILE A . n A 1 53 ALA 53 47 47 ALA ALA A . n A 1 54 GLY 54 48 48 GLY GLY A . n A 1 55 PHE 55 49 49 PHE PHE A . n A 1 56 GLY 56 50 50 GLY GLY A . n A 1 57 LYS 57 51 51 LYS LYS A . n A 1 58 PHE 58 52 52 PHE PHE A . n A 1 59 ALA 59 53 53 ALA ALA A . n A 1 60 VAL 60 54 54 VAL VAL A . n A 1 61 THR 61 55 55 THR THR A . n A 1 62 GLU 62 56 56 GLU GLU A . n A 1 63 ARG 63 57 57 ARG ARG A . n A 1 64 ALA 64 58 58 ALA ALA A . n A 1 65 ALA 65 59 59 ALA ALA A . n A 1 66 ARG 66 60 60 ARG ARG A . n A 1 67 ASP 67 61 61 ASP ASP A . n A 1 68 GLY 68 62 62 GLY GLY A . n A 1 69 ARG 69 63 63 ARG ARG A . n A 1 70 ASN 70 64 64 ASN ASN A . n A 1 71 PRO 71 65 ? ? ? A . n A 1 72 SER 72 66 ? ? ? A . n A 1 73 THR 73 67 67 THR THR A . n A 1 74 GLY 74 68 68 GLY GLY A . n A 1 75 GLU 75 69 69 GLU GLU A . n A 1 76 THR 76 70 70 THR THR A . n A 1 77 ILE 77 71 71 ILE ILE A . n A 1 78 LYS 78 72 72 LYS LYS A . n A 1 79 ILE 79 73 73 ILE ILE A . n A 1 80 PRO 80 74 74 PRO PRO A . n A 1 81 ALA 81 75 75 ALA ALA A . n A 1 82 SER 82 76 76 SER SER A . n A 1 83 LYS 83 77 77 LYS LYS A . n A 1 84 SER 84 78 78 SER SER A . n A 1 85 ALA 85 79 79 ALA ALA A . n A 1 86 LYS 86 80 80 LYS LYS A . n A 1 87 PHE 87 81 81 PHE PHE A . n A 1 88 LYS 88 82 82 LYS LYS A . n A 1 89 ALA 89 83 83 ALA ALA A . n A 1 90 GLY 90 84 84 GLY GLY A . n A 1 91 LYS 91 85 85 LYS LYS A . n A 1 92 GLN 92 86 86 GLN GLN A . n A 1 93 LEU 93 87 87 LEU LEU A . n A 1 94 LYS 94 88 88 LYS LYS A . n A 1 95 THR 95 89 89 THR THR A . n A 1 96 ASP 96 90 90 ASP ASP A . n A 1 97 LEU 97 91 91 LEU LEU A . n A 1 98 ASN 98 92 92 ASN ASN A . n A 1 99 ASN 99 93 93 ASN ASN A . n A 1 100 ASN 100 94 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 1 HOH HOH A . B 2 HOH 2 102 2 HOH HOH A . B 2 HOH 3 103 3 HOH HOH A . B 2 HOH 4 104 4 HOH HOH A . B 2 HOH 5 105 5 HOH HOH A . B 2 HOH 6 106 6 HOH HOH A . B 2 HOH 7 107 7 HOH HOH A . B 2 HOH 8 108 8 HOH HOH A . B 2 HOH 9 109 9 HOH HOH A . B 2 HOH 10 110 10 HOH HOH A . B 2 HOH 11 111 11 HOH HOH A . B 2 HOH 12 112 12 HOH HOH A . B 2 HOH 13 113 13 HOH HOH A . B 2 HOH 14 114 14 HOH HOH A . B 2 HOH 15 115 15 HOH HOH A . B 2 HOH 16 116 16 HOH HOH A . B 2 HOH 17 117 17 HOH HOH A . B 2 HOH 18 118 18 HOH HOH A . B 2 HOH 19 119 19 HOH HOH A . B 2 HOH 20 120 20 HOH HOH A . B 2 HOH 21 121 21 HOH HOH A . B 2 HOH 22 122 22 HOH HOH A . B 2 HOH 23 123 23 HOH HOH A . B 2 HOH 24 124 24 HOH HOH A . B 2 HOH 25 125 25 HOH HOH A . B 2 HOH 26 126 26 HOH HOH A . B 2 HOH 27 127 27 HOH HOH A . B 2 HOH 28 128 28 HOH HOH A . B 2 HOH 29 129 29 HOH HOH A . B 2 HOH 30 130 30 HOH HOH A . B 2 HOH 31 131 31 HOH HOH A . B 2 HOH 32 132 32 HOH HOH A . B 2 HOH 33 133 33 HOH HOH A . B 2 HOH 34 134 34 HOH HOH A . B 2 HOH 35 135 35 HOH HOH A . B 2 HOH 36 136 36 HOH HOH A . B 2 HOH 37 137 37 HOH HOH A . B 2 HOH 38 138 38 HOH HOH A . B 2 HOH 39 139 39 HOH HOH A . B 2 HOH 40 140 40 HOH HOH A . B 2 HOH 41 141 41 HOH HOH A . B 2 HOH 42 142 42 HOH HOH A . B 2 HOH 43 143 43 HOH HOH A . B 2 HOH 44 144 44 HOH HOH A . B 2 HOH 45 145 45 HOH HOH A . B 2 HOH 46 146 46 HOH HOH A . B 2 HOH 47 147 47 HOH HOH A . B 2 HOH 48 148 48 HOH HOH A . B 2 HOH 49 149 49 HOH HOH A . B 2 HOH 50 150 50 HOH HOH A . B 2 HOH 51 151 51 HOH HOH A . B 2 HOH 52 152 52 HOH HOH A . B 2 HOH 53 153 53 HOH HOH A . B 2 HOH 54 154 54 HOH HOH A . B 2 HOH 55 155 55 HOH HOH A . B 2 HOH 56 156 56 HOH HOH A . B 2 HOH 57 157 57 HOH HOH A . B 2 HOH 58 158 58 HOH HOH A . B 2 HOH 59 159 59 HOH HOH A . B 2 HOH 60 160 60 HOH HOH A . B 2 HOH 61 161 61 HOH HOH A . B 2 HOH 62 162 62 HOH HOH A . B 2 HOH 63 163 63 HOH HOH A . B 2 HOH 64 164 64 HOH HOH A . B 2 HOH 65 165 65 HOH HOH A . B 2 HOH 66 166 66 HOH HOH A . B 2 HOH 67 167 67 HOH HOH A . B 2 HOH 68 168 68 HOH HOH A . B 2 HOH 69 169 69 HOH HOH A . B 2 HOH 70 170 70 HOH HOH A . B 2 HOH 71 171 71 HOH HOH A . B 2 HOH 72 172 72 HOH HOH A . B 2 HOH 73 173 73 HOH HOH A . B 2 HOH 74 174 74 HOH HOH A . B 2 HOH 75 175 76 HOH HOH A . B 2 HOH 76 176 77 HOH HOH A . B 2 HOH 77 177 78 HOH HOH A . B 2 HOH 78 178 79 HOH HOH A . B 2 HOH 79 179 80 HOH HOH A . B 2 HOH 80 180 81 HOH HOH A . B 2 HOH 81 181 82 HOH HOH A . B 2 HOH 82 182 83 HOH HOH A . B 2 HOH 83 183 84 HOH HOH A . B 2 HOH 84 184 85 HOH HOH A . B 2 HOH 85 185 86 HOH HOH A . B 2 HOH 86 186 87 HOH HOH A . B 2 HOH 87 187 88 HOH HOH A . B 2 HOH 88 188 89 HOH HOH A . B 2 HOH 89 189 90 HOH HOH A . B 2 HOH 90 190 91 HOH HOH A . B 2 HOH 91 191 92 HOH HOH A . B 2 HOH 92 192 93 HOH HOH A . B 2 HOH 93 193 94 HOH HOH A . B 2 HOH 94 194 95 HOH HOH A . B 2 HOH 95 195 96 HOH HOH A . B 2 HOH 96 196 97 HOH HOH A . B 2 HOH 97 197 98 HOH HOH A . B 2 HOH 98 198 99 HOH HOH A . B 2 HOH 99 199 100 HOH HOH A . B 2 HOH 100 200 101 HOH HOH A . B 2 HOH 101 201 102 HOH HOH A . B 2 HOH 102 202 103 HOH HOH A . B 2 HOH 103 203 104 HOH HOH A . B 2 HOH 104 204 105 HOH HOH A . B 2 HOH 105 205 106 HOH HOH A . B 2 HOH 106 206 107 HOH HOH A . B 2 HOH 107 207 108 HOH HOH A . B 2 HOH 108 208 109 HOH HOH A . B 2 HOH 109 209 110 HOH HOH A . B 2 HOH 110 210 111 HOH HOH A . B 2 HOH 111 211 113 HOH HOH A . B 2 HOH 112 212 114 HOH HOH A . B 2 HOH 113 213 115 HOH HOH A . B 2 HOH 114 214 116 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4530 ? 1 MORE -44 ? 1 'SSA (A^2)' 10480 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1.0000000000 0.0000000000 0.0000000000 12.3531487746 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -37.2869697797 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-11-12 2 'Structure model' 1 1 2018-01-24 3 'Structure model' 1 2 2023-03-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Obsolete ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' audit_author 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_PDB_obs_spr 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_audit_author.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_database_status.status_code' 5 3 'Structure model' '_pdbx_database_status.status_code_sf' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 HZ3 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 3 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASN _pdbx_validate_close_contact.auth_seq_id_2 28 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CD _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 36 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CE _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 36 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 NZ _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 36 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 126.10 _pdbx_validate_rmsd_angle.angle_target_value 111.70 _pdbx_validate_rmsd_angle.angle_deviation 14.40 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 63 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 64 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 134.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -1 ? CG ? A HIS 5 CG 2 1 Y 1 A HIS -1 ? ND1 ? A HIS 5 ND1 3 1 Y 1 A HIS -1 ? CD2 ? A HIS 5 CD2 4 1 Y 1 A HIS -1 ? CE1 ? A HIS 5 CE1 5 1 Y 1 A HIS -1 ? NE2 ? A HIS 5 NE2 6 1 Y 1 A LYS 4 ? CD ? A LYS 10 CD 7 1 Y 1 A LYS 4 ? CE ? A LYS 10 CE 8 1 Y 1 A LYS 4 ? NZ ? A LYS 10 NZ 9 1 Y 1 A ARG 63 ? CG ? A ARG 69 CG 10 1 Y 1 A ARG 63 ? CD ? A ARG 69 CD 11 1 Y 1 A ARG 63 ? NE ? A ARG 69 NE 12 1 Y 1 A ARG 63 ? CZ ? A ARG 69 CZ 13 1 Y 1 A ARG 63 ? NH1 ? A ARG 69 NH1 14 1 Y 1 A ARG 63 ? NH2 ? A ARG 69 NH2 15 1 Y 1 A ASN 64 ? CG ? A ASN 70 CG 16 1 Y 1 A ASN 64 ? OD1 ? A ASN 70 OD1 17 1 Y 1 A ASN 64 ? ND2 ? A ASN 70 ND2 18 1 Y 1 A THR 67 ? OG1 ? A THR 73 OG1 19 1 Y 1 A THR 67 ? CG2 ? A THR 73 CG2 20 1 Y 1 A THR 70 ? OG1 ? A THR 76 OG1 21 1 Y 1 A THR 70 ? CG2 ? A THR 76 CG2 22 1 Y 1 A ILE 71 ? CG2 ? A ILE 77 CG2 23 1 Y 1 A LYS 80 ? CG ? A LYS 86 CG 24 1 Y 1 A LYS 80 ? CD ? A LYS 86 CD 25 1 Y 1 A LYS 80 ? CE ? A LYS 86 CE 26 1 Y 1 A LYS 80 ? NZ ? A LYS 86 NZ 27 1 Y 1 A LYS 85 ? CG ? A LYS 91 CG 28 1 Y 1 A LYS 85 ? CD ? A LYS 91 CD 29 1 Y 1 A LYS 85 ? CE ? A LYS 91 CE 30 1 Y 1 A LYS 85 ? NZ ? A LYS 91 NZ 31 1 Y 1 A ASN 93 ? CG ? A ASN 99 CG 32 1 Y 1 A ASN 93 ? OD1 ? A ASN 99 OD1 33 1 Y 1 A ASN 93 ? ND2 ? A ASN 99 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -5 ? A HIS 1 2 1 Y 1 A HIS -4 ? A HIS 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A HIS -2 ? A HIS 4 5 1 Y 1 A PRO 65 ? A PRO 71 6 1 Y 1 A SER 66 ? A SER 72 7 1 Y 1 A ASN 94 ? A ASN 100 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #