HEADER TRANSFERASE 04-OCT-13 4N1Z TITLE CRYSTAL STRUCTURE OF HUMAN FARNESYL DIPHOSPHATE SYNTHASE IN COMPLEX TITLE 2 WITH BPH-1222 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: UNP RESIDUES 72-419; COMPND 5 SYNONYM: FPP SYNTHASE, FPS, (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE, FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10, 2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA FOLD, SYNTHASE, IONIZATION, DEPHOSPHORYLATION, CYTOSOL, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.LIU,Y.XIA,Y.ZHANG,I.VERMA,E.OLDFIELD REVDAT 2 20-SEP-23 4N1Z 1 REMARK LINK REVDAT 1 10-DEC-14 4N1Z 0 JRNL AUTH Y.XIA,Y.L.LIU,Y.XIE,W.ZHU,F.GUERRA,S.SHEN,N.YEDDULA, JRNL AUTH 2 W.FISCHER,W.LOW,X.ZHOU,Y.ZHANG,E.OLDFIELD,I.M.VERMA JRNL TITL A COMBINATION THERAPY FOR KRAS-DRIVEN LUNG ADENOCARCINOMAS JRNL TITL 2 USING LIPOPHILIC BISPHOSPHONATES AND RAPAMYCIN. JRNL REF SCI TRANSL MED V. 6 RA161 2014 JRNL REFN ISSN 1946-6234 JRNL PMID 25411474 JRNL DOI 10.1126/SCITRANSLMED.3010382 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1182 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.212 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2780 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3767 ; 1.893 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.841 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;38.617 ;24.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 483 ;20.152 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.071 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2088 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1329 ; 3.397 ; 4.530 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1656 ; 4.955 ; 6.783 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1450 ; 5.229 ; 5.074 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 4N1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 297 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4GA3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NA/K PHOSPHATE, 25% GLYCEROL, PH REMARK 280 5.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.64200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.97300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.82100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.97300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.46300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.97300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.82100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.97300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.97300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.46300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.64200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ASP F 8 REMARK 465 GLU F 30 REMARK 465 ASP F 31 REMARK 465 GLU F 32 REMARK 465 MET F 33 REMARK 465 GLY F 34 REMARK 465 VAL F 183 REMARK 465 ASP F 184 REMARK 465 TYR F 349 REMARK 465 LYS F 350 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG F 403 OAD N1Z F 406 1.58 REMARK 500 O1 PO4 F 401 O4 PO4 F 405 1.86 REMARK 500 OD1 ASP F 103 OAD N1Z F 406 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 107 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F 77 57.69 -94.12 REMARK 500 VAL F 124 -70.09 -117.47 REMARK 500 PHE F 206 -59.41 -129.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 103 OD1 REMARK 620 2 ASP F 107 OD2 63.2 REMARK 620 3 N1Z F 406 OAH 85.1 141.3 REMARK 620 4 N1Z F 406 OAF 66.4 52.3 96.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 103 OD2 REMARK 620 2 ASP F 107 OD2 76.8 REMARK 620 3 N1Z F 406 OAF 94.8 79.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 243 OD2 REMARK 620 2 N1Z F 406 OAC 77.0 REMARK 620 3 N1Z F 406 OAE 88.9 82.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N1Z F 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GA3 RELATED DB: PDB DBREF 4N1Z F 6 353 UNP P14324 FPPS_HUMAN 72 419 SEQRES 1 F 348 ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE VAL SEQRES 2 F 348 GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU ASP SEQRES 3 F 348 GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA ARG SEQRES 4 F 348 LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY LYS SEQRES 5 F 348 TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG GLU SEQRES 6 F 348 LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU GLN SEQRES 7 F 348 ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU GLN SEQRES 8 F 348 ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SER SEQRES 9 F 348 LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS PRO SEQRES 10 F 348 GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU LEU SEQRES 11 F 348 GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS ARG SEQRES 12 F 348 GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE LEU SEQRES 13 F 348 GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU ASP SEQRES 14 F 348 LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL ARG SEQRES 15 F 348 PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR LYS SEQRES 16 F 348 THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA ALA SEQRES 17 F 348 MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS ALA SEQRES 18 F 348 ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE PHE SEQRES 19 F 348 GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP PRO SEQRES 20 F 348 SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP ASN SEQRES 21 F 348 LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG ALA SEQRES 22 F 348 THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR GLY SEQRES 23 F 348 GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA LEU SEQRES 24 F 348 TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN TYR SEQRES 25 F 348 GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE GLU SEQRES 26 F 348 GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU GLY SEQRES 27 F 348 LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET PO4 F 401 5 HET MG F 402 1 HET MG F 403 1 HET MG F 404 1 HET PO4 F 405 5 HET N1Z F 406 24 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM N1Z HYDROGEN [(1S)-1-HYDROXY-2-(3-OCTYL-1H-IMIDAZOL-3-IUM- HETNAM 2 N1Z 1-YL)-1-PHOSPHONOETHYL]PHOSPHONATE FORMUL 2 PO4 2(O4 P 3-) FORMUL 3 MG 3(MG 2+) FORMUL 7 N1Z C13 H26 N2 O7 P2 FORMUL 8 HOH *57(H2 O) HELIX 1 1 VAL F 9 HIS F 20 1 12 HELIX 2 2 HIS F 20 THR F 29 1 10 HELIX 3 3 HIS F 35 GLU F 37 5 3 HELIX 4 4 ILE F 38 ILE F 54 1 17 HELIX 5 5 TYR F 58 VAL F 72 1 15 HELIX 6 6 ASP F 78 SER F 108 1 31 HELIX 7 7 TRP F 118 LYS F 121 5 4 HELIX 8 8 VAL F 124 LEU F 126 5 3 HELIX 9 9 ASP F 127 ARG F 148 1 22 HELIX 10 10 TYR F 152 THR F 177 1 26 HELIX 11 11 THR F 189 THR F 201 1 13 HELIX 12 12 THR F 201 PHE F 206 1 6 HELIX 13 13 PHE F 206 ALA F 217 1 12 HELIX 14 14 GLY F 221 GLY F 250 1 30 HELIX 15 15 ASP F 251 GLY F 256 1 6 HELIX 16 16 SER F 268 ALA F 278 1 11 HELIX 17 17 THR F 279 TYR F 290 1 12 HELIX 18 18 GLU F 294 LEU F 308 1 15 HELIX 19 19 ASP F 309 ALA F 333 1 25 HELIX 20 20 PRO F 337 ILE F 348 1 12 SHEET 1 A 2 THR F 111 ARG F 112 0 SHEET 2 A 2 GLN F 115 ILE F 116 -1 O GLN F 115 N ARG F 112 LINK OD1 ASP F 103 MG MG F 403 1555 1555 2.62 LINK OD2 ASP F 103 MG MG F 404 1555 1555 1.96 LINK OD2 ASP F 107 MG MG F 403 1555 1555 2.35 LINK OD2 ASP F 107 MG MG F 404 1555 1555 2.05 LINK OD2 ASP F 243 MG MG F 402 1555 1555 2.30 LINK MG MG F 402 OAC N1Z F 406 1555 1555 2.16 LINK MG MG F 402 OAE N1Z F 406 1555 1555 2.21 LINK MG MG F 403 OAH N1Z F 406 1555 1555 2.87 LINK MG MG F 403 OAF N1Z F 406 1555 1555 2.93 LINK MG MG F 404 OAF N1Z F 406 1555 1555 1.65 CISPEP 1 ALA F 334 PRO F 335 0 4.76 SITE 1 AC1 9 ARG F 60 GLN F 96 ARG F 112 PHE F 239 SITE 2 AC1 9 LYS F 257 PO4 F 405 N1Z F 406 HOH F 511 SITE 3 AC1 9 HOH F 527 SITE 1 AC2 2 ASP F 243 N1Z F 406 SITE 1 AC3 3 ASP F 103 ASP F 107 N1Z F 406 SITE 1 AC4 3 ASP F 103 ASP F 107 N1Z F 406 SITE 1 AC5 10 GLY F 56 LYS F 57 ARG F 60 GLN F 96 SITE 2 AC5 10 ARG F 113 PO4 F 401 HOH F 508 HOH F 511 SITE 3 AC5 10 HOH F 544 HOH F 549 SITE 1 AC6 17 PHE F 99 ASP F 103 ASP F 107 ARG F 112 SITE 2 AC6 17 ASN F 130 GLU F 168 GLN F 171 LYS F 200 SITE 3 AC6 17 THR F 201 ASP F 243 LYS F 257 PO4 F 401 SITE 4 AC6 17 MG F 402 MG F 403 MG F 404 HOH F 505 SITE 5 AC6 17 HOH F 533 CRYST1 111.946 111.946 67.284 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014862 0.00000