HEADER VIRAL PROTEIN 04-OCT-13 4N21 TITLE CRYSTAL STRUCTURE OF THE GP2 CORE DOMAIN FROM THE CALIFORNIA ACADEMY TITLE 2 OF SCIENCE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP2 ECTODOMAIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAS VIRUS; SOURCE 3 ORGANISM_TAXID: 1223561; SOURCE 4 GENE: GP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CAS VIRUS, POST-FUSION CONFORMATION, STRUCTURAL GENOMICS, PSI- KEYWDS 2 BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, KEYWDS 3 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,J.F.KOELLHOFFER,Z.DAI,R.TORO,J.R.LAI,S.C.ALMO,NEW AUTHOR 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 4 20-SEP-23 4N21 1 REMARK REVDAT 3 02-APR-14 4N21 1 JRNL REVDAT 2 08-JAN-14 4N21 1 JRNL REVDAT 1 27-NOV-13 4N21 0 JRNL AUTH J.F.KOELLHOFFER,Z.DAI,V.N.MALASHKEVICH,M.D.STENGLEIN,Y.LIU, JRNL AUTH 2 R.TORO,J.S HARRISON,K.CHANDRAN,J.L.DERISI,S.C.ALMO,J.R.LAI JRNL TITL STRUCTURAL CHARACTERIZATION OF THE GLYCOPROTEIN GP2 CORE JRNL TITL 2 DOMAIN FROM THE CAS VIRUS, A NOVEL ARENAVIRUS-LIKE SPECIES. JRNL REF J.MOL.BIOL. V. 426 1452 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24333483 JRNL DOI 10.1016/J.JMB.2013.12.009 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 51570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -22.77000 REMARK 3 B22 (A**2) : 44.84000 REMARK 3 B33 (A**2) : -22.07000 REMARK 3 B12 (A**2) : -22.49000 REMARK 3 B13 (A**2) : 7.92000 REMARK 3 B23 (A**2) : -9.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6247 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8430 ; 1.148 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 769 ; 4.502 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;40.552 ;26.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1236 ;18.158 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.456 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 963 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4544 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 6 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.213 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-H-K,-L REMARK 3 TWIN FRACTION : 0.151 REMARK 3 TWIN DOMAIN : 3 REMARK 3 TWIN OPERATOR : -H-K, K, -K-L REMARK 3 TWIN FRACTION : 0.161 REMARK 3 TWIN DOMAIN : 4 REMARK 3 TWIN OPERATOR : K, -H-K, H+K+L REMARK 3 TWIN FRACTION : 0.168 REMARK 3 TWIN DOMAIN : 5 REMARK 3 TWIN OPERATOR : -H-K, H, K+L REMARK 3 TWIN FRACTION : 0.146 REMARK 3 TWIN DOMAIN : 6 REMARK 3 TWIN OPERATOR : K, H, -H-K-L REMARK 3 TWIN FRACTION : 0.161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 229 A 351 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6734 13.6315 51.3651 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.0969 REMARK 3 T33: 0.0589 T12: -0.0253 REMARK 3 T13: 0.0094 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.0790 L22: 0.3063 REMARK 3 L33: 1.4026 L12: -0.0313 REMARK 3 L13: 0.1176 L23: -0.4068 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: 0.0063 S13: -0.0077 REMARK 3 S21: -0.0122 S22: -0.0222 S23: 0.0804 REMARK 3 S31: 0.0248 S32: 0.0721 S33: 0.0502 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 229 B 351 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9709 15.0050 51.3899 REMARK 3 T TENSOR REMARK 3 T11: 0.0109 T22: 0.1084 REMARK 3 T33: 0.0547 T12: -0.0215 REMARK 3 T13: 0.0135 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1195 L22: 0.3599 REMARK 3 L33: 0.2843 L12: -0.0734 REMARK 3 L13: -0.1828 L23: 0.1210 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0168 S13: -0.0005 REMARK 3 S21: -0.0085 S22: -0.0289 S23: -0.0449 REMARK 3 S31: -0.0189 S32: -0.0338 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 228 C 351 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9845 10.6458 50.6968 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.1013 REMARK 3 T33: 0.0593 T12: -0.0161 REMARK 3 T13: 0.0240 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.1316 L22: 0.4031 REMARK 3 L33: 0.1813 L12: -0.1098 REMARK 3 L13: -0.0229 L23: 0.2532 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.0207 S13: -0.0355 REMARK 3 S21: -0.0123 S22: 0.0006 S23: -0.0038 REMARK 3 S31: -0.0010 S32: 0.0168 S33: -0.0160 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 229 D 351 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6838 -2.3848 55.6932 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.1038 REMARK 3 T33: 0.0586 T12: -0.0202 REMARK 3 T13: 0.0286 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.0699 L22: 0.3165 REMARK 3 L33: 0.5101 L12: -0.0545 REMARK 3 L13: 0.1849 L23: -0.1777 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0004 S13: -0.0069 REMARK 3 S21: 0.0173 S22: -0.0082 S23: -0.0259 REMARK 3 S31: 0.0082 S32: -0.0260 S33: 0.0106 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 230 E 350 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6522 2.0284 55.0023 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.0938 REMARK 3 T33: 0.0544 T12: -0.0231 REMARK 3 T13: 0.0120 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.1248 L22: 0.2864 REMARK 3 L33: 0.9870 L12: -0.0739 REMARK 3 L13: -0.0641 L23: 0.4628 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.0056 S13: 0.0435 REMARK 3 S21: 0.0187 S22: -0.0328 S23: -0.0112 REMARK 3 S31: 0.0580 S32: -0.0097 S33: 0.0538 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 228 F 351 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5159 -1.0141 56.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0937 REMARK 3 T33: 0.0598 T12: -0.0196 REMARK 3 T13: 0.0135 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.1163 L22: 0.3230 REMARK 3 L33: 0.8027 L12: -0.0882 REMARK 3 L13: 0.1014 L23: -0.4260 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.0100 S13: -0.0110 REMARK 3 S21: 0.0365 S22: -0.0085 S23: 0.0379 REMARK 3 S31: -0.0745 S32: 0.0003 S33: 0.0339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4N21 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: 4G2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M MES-NAOH, REMARK 280 PH 6, 35% MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, REMARK 280 PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -179.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 MET B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 MET C 222 REMARK 465 HIS C 223 REMARK 465 HIS C 224 REMARK 465 HIS C 225 REMARK 465 HIS C 226 REMARK 465 HIS C 227 REMARK 465 MET D 222 REMARK 465 HIS D 223 REMARK 465 HIS D 224 REMARK 465 HIS D 225 REMARK 465 HIS D 226 REMARK 465 HIS D 227 REMARK 465 HIS D 228 REMARK 465 MET E 222 REMARK 465 HIS E 223 REMARK 465 HIS E 224 REMARK 465 HIS E 225 REMARK 465 HIS E 226 REMARK 465 HIS E 227 REMARK 465 HIS E 228 REMARK 465 GLU E 229 REMARK 465 GLU E 351 REMARK 465 MET F 222 REMARK 465 HIS F 223 REMARK 465 HIS F 224 REMARK 465 HIS F 225 REMARK 465 HIS F 226 REMARK 465 HIS F 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 319 110.94 30.90 REMARK 500 HIS A 350 -40.01 -133.43 REMARK 500 GLN B 311 14.18 -149.86 REMARK 500 LYS B 319 89.78 37.53 REMARK 500 MET B 322 28.04 -141.31 REMARK 500 VAL C 318 70.72 -115.76 REMARK 500 LYS D 319 -173.57 62.47 REMARK 500 SER D 324 42.13 -106.35 REMARK 500 GLN E 311 33.06 -143.08 REMARK 500 LYS E 319 110.47 54.16 REMARK 500 MET E 322 57.43 -141.58 REMARK 500 LYS F 319 118.21 73.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD E 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-031146 RELATED DB: TARGETTRACK DBREF 4N21 A 222 351 PDB 4N21 4N21 222 351 DBREF 4N21 B 222 351 PDB 4N21 4N21 222 351 DBREF 4N21 C 222 351 PDB 4N21 4N21 222 351 DBREF 4N21 D 222 351 PDB 4N21 4N21 222 351 DBREF 4N21 E 222 351 PDB 4N21 4N21 222 351 DBREF 4N21 F 222 351 PDB 4N21 4N21 222 351 SEQRES 1 A 130 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 130 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 A 130 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 A 130 ILE LYS LYS LEU ILE GLY ALA ILE ALA SER LYS ILE ILE SEQRES 5 A 130 LYS THR ALA ASN TYR THR THR ASN ALA LEU PHE LEU LEU SEQRES 6 A 130 ASN LYS GLU GLU SER GLU ILE ARG ASP HIS VAL VAL GLU SEQRES 7 A 130 HIS GLU LEU ALA LEU ASN TYR LEU LEU ALA HIS GLN GLY SEQRES 8 A 130 GLY LEU CYS ASN VAL VAL LYS GLY PRO MET CYS SER SER SEQRES 9 A 130 ASP ILE ASP ASP PHE SER LYS ASN VAL SER ASP MET ILE SEQRES 10 A 130 ASP LYS VAL HIS GLU GLU MET LYS LYS PHE TYR HIS GLU SEQRES 1 B 130 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 130 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 B 130 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 B 130 ILE LYS LYS LEU ILE GLY ALA ILE ALA SER LYS ILE ILE SEQRES 5 B 130 LYS THR ALA ASN TYR THR THR ASN ALA LEU PHE LEU LEU SEQRES 6 B 130 ASN LYS GLU GLU SER GLU ILE ARG ASP HIS VAL VAL GLU SEQRES 7 B 130 HIS GLU LEU ALA LEU ASN TYR LEU LEU ALA HIS GLN GLY SEQRES 8 B 130 GLY LEU CYS ASN VAL VAL LYS GLY PRO MET CYS SER SER SEQRES 9 B 130 ASP ILE ASP ASP PHE SER LYS ASN VAL SER ASP MET ILE SEQRES 10 B 130 ASP LYS VAL HIS GLU GLU MET LYS LYS PHE TYR HIS GLU SEQRES 1 C 130 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 C 130 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 C 130 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 C 130 ILE LYS LYS LEU ILE GLY ALA ILE ALA SER LYS ILE ILE SEQRES 5 C 130 LYS THR ALA ASN TYR THR THR ASN ALA LEU PHE LEU LEU SEQRES 6 C 130 ASN LYS GLU GLU SER GLU ILE ARG ASP HIS VAL VAL GLU SEQRES 7 C 130 HIS GLU LEU ALA LEU ASN TYR LEU LEU ALA HIS GLN GLY SEQRES 8 C 130 GLY LEU CYS ASN VAL VAL LYS GLY PRO MET CYS SER SER SEQRES 9 C 130 ASP ILE ASP ASP PHE SER LYS ASN VAL SER ASP MET ILE SEQRES 10 C 130 ASP LYS VAL HIS GLU GLU MET LYS LYS PHE TYR HIS GLU SEQRES 1 D 130 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 D 130 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 D 130 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 D 130 ILE LYS LYS LEU ILE GLY ALA ILE ALA SER LYS ILE ILE SEQRES 5 D 130 LYS THR ALA ASN TYR THR THR ASN ALA LEU PHE LEU LEU SEQRES 6 D 130 ASN LYS GLU GLU SER GLU ILE ARG ASP HIS VAL VAL GLU SEQRES 7 D 130 HIS GLU LEU ALA LEU ASN TYR LEU LEU ALA HIS GLN GLY SEQRES 8 D 130 GLY LEU CYS ASN VAL VAL LYS GLY PRO MET CYS SER SER SEQRES 9 D 130 ASP ILE ASP ASP PHE SER LYS ASN VAL SER ASP MET ILE SEQRES 10 D 130 ASP LYS VAL HIS GLU GLU MET LYS LYS PHE TYR HIS GLU SEQRES 1 E 130 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 E 130 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 E 130 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 E 130 ILE LYS LYS LEU ILE GLY ALA ILE ALA SER LYS ILE ILE SEQRES 5 E 130 LYS THR ALA ASN TYR THR THR ASN ALA LEU PHE LEU LEU SEQRES 6 E 130 ASN LYS GLU GLU SER GLU ILE ARG ASP HIS VAL VAL GLU SEQRES 7 E 130 HIS GLU LEU ALA LEU ASN TYR LEU LEU ALA HIS GLN GLY SEQRES 8 E 130 GLY LEU CYS ASN VAL VAL LYS GLY PRO MET CYS SER SER SEQRES 9 E 130 ASP ILE ASP ASP PHE SER LYS ASN VAL SER ASP MET ILE SEQRES 10 E 130 ASP LYS VAL HIS GLU GLU MET LYS LYS PHE TYR HIS GLU SEQRES 1 F 130 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 F 130 GLY ASN MET LYS GLN ILE GLU ASP LYS ILE GLU GLU ILE SEQRES 3 F 130 LEU SER LYS ILE TYR HIS ILE GLU ASN GLU ILE ALA ARG SEQRES 4 F 130 ILE LYS LYS LEU ILE GLY ALA ILE ALA SER LYS ILE ILE SEQRES 5 F 130 LYS THR ALA ASN TYR THR THR ASN ALA LEU PHE LEU LEU SEQRES 6 F 130 ASN LYS GLU GLU SER GLU ILE ARG ASP HIS VAL VAL GLU SEQRES 7 F 130 HIS GLU LEU ALA LEU ASN TYR LEU LEU ALA HIS GLN GLY SEQRES 8 F 130 GLY LEU CYS ASN VAL VAL LYS GLY PRO MET CYS SER SER SEQRES 9 F 130 ASP ILE ASP ASP PHE SER LYS ASN VAL SER ASP MET ILE SEQRES 10 F 130 ASP LYS VAL HIS GLU GLU MET LYS LYS PHE TYR HIS GLU HET MPD A 401 8 HET MPD A 402 8 HET MPD B 401 8 HET MPD B 402 8 HET MPD B 403 8 HET MPD C 401 8 HET MPD C 402 8 HET MPD D 401 8 HET MPD D 402 8 HET MPD E 401 8 HET MPD E 402 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 7 MPD 11(C6 H14 O2) FORMUL 18 HOH *232(H2 O) HELIX 1 1 ASN A 230 LEU A 308 1 79 HELIX 2 2 ALA A 309 GLY A 312 5 4 HELIX 3 3 GLY A 313 VAL A 318 1 6 HELIX 4 4 PHE A 330 PHE A 348 1 19 HELIX 5 5 ASN B 230 LEU B 308 1 79 HELIX 6 6 ALA B 309 GLY B 312 5 4 HELIX 7 7 GLY B 313 VAL B 318 1 6 HELIX 8 8 PHE B 330 LYS B 347 1 18 HELIX 9 9 PHE B 348 HIS B 350 5 3 HELIX 10 10 GLU C 229 LEU C 308 1 80 HELIX 11 11 ALA C 309 GLN C 311 5 3 HELIX 12 12 GLY C 312 VAL C 318 1 7 HELIX 13 13 PHE C 330 PHE C 348 1 19 HELIX 14 14 ASN D 230 LEU D 308 1 79 HELIX 15 15 GLY D 313 VAL D 318 1 6 HELIX 16 16 PHE D 330 LYS D 347 1 18 HELIX 17 17 PHE D 348 GLU D 351 5 4 HELIX 18 18 LEU E 231 LEU E 308 1 78 HELIX 19 19 ALA E 309 GLY E 312 5 4 HELIX 20 20 GLY E 313 VAL E 317 5 5 HELIX 21 21 PHE E 330 PHE E 348 1 19 HELIX 22 22 ASN F 230 LEU F 308 1 79 HELIX 23 23 ALA F 309 GLN F 311 5 3 HELIX 24 24 GLY F 312 LYS F 319 1 8 HELIX 25 25 PHE F 330 LYS F 347 1 18 HELIX 26 26 PHE F 348 GLU F 351 5 4 SSBOND 1 CYS E 315 CYS E 323 1555 1555 2.04 SITE 1 AC1 6 ASN A 277 MET A 345 HOH A 531 ASN E 277 SITE 2 AC1 6 HIS E 342 LYS E 346 SITE 1 AC2 3 SER A 270 ASN E 281 HOH E 508 SITE 1 AC3 5 THR A 279 ILE B 272 ALA B 276 THR B 279 SITE 2 AC3 5 THR C 279 SITE 1 AC4 6 LYS A 340 LYS B 274 TYR B 278 LYS D 274 SITE 2 AC4 6 TYR D 278 LYS F 340 SITE 1 AC5 4 ASN B 281 PHE B 284 HOH B 536 SER D 270 SITE 1 AC6 5 MET C 345 LYS C 346 HOH C 505 HIS F 342 SITE 2 AC6 5 LYS F 346 SITE 1 AC7 6 LYS B 340 LYS C 274 TYR C 278 LYS E 340 SITE 2 AC7 6 TYR F 278 HOH F 409 SITE 1 AC8 5 THR D 279 ALA E 276 THR E 279 ALA F 276 SITE 2 AC8 5 THR F 279 SITE 1 AC9 4 ASN B 277 LYS B 346 ASN D 277 HIS D 342 SITE 1 BC1 6 TYR A 278 LYS C 340 LYS D 340 LYS E 274 SITE 2 BC1 6 TYR E 278 HOH E 530 SITE 1 BC2 3 ASN A 281 SER E 270 HOH E 532 CRYST1 46.676 46.713 109.451 102.32 89.99 119.98 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021424 0.012359 0.003134 0.00000 SCALE2 0.000000 0.024714 0.006276 0.00000 SCALE3 0.000000 0.000000 0.009427 0.00000