HEADER SUGAR BINDING PROTEIN 06-OCT-13 4N37 TITLE STRUCTURE OF LANGERIN CRD I313 D288 COMPLEXED WITH ME-MAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER K; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CARBOHYDRATE RECOGNITION DOMAIN; COMPND 5 SYNONYM: LANGERIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD207, CLEC4K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRD CARBOHYDRATE COMPLEX, CARBOHYDRATE-RECOGNITION DOMAIN, C-TYPE KEYWDS 2 LECTIN ON LANGERHANS CELLS, CARBOHYDRATE/SUGAR BINDING, RECEPTOR ON KEYWDS 3 LANGERHANS CELLS, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,T.J.W.ROWNTREE,S.L.W.TAN,K.DRICKAMER,W.I.WEIS,M.E.TAYLOR REVDAT 6 20-SEP-23 4N37 1 HETSYN REVDAT 5 29-JUL-20 4N37 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 15-NOV-17 4N37 1 REMARK REVDAT 3 22-JAN-14 4N37 1 JRNL REVDAT 2 04-DEC-13 4N37 1 JRNL REVDAT 1 20-NOV-13 4N37 0 JRNL AUTH H.FEINBERG,T.J.ROWNTREE,S.L.TAN,K.DRICKAMER,W.I.WEIS, JRNL AUTH 2 M.E.TAYLOR JRNL TITL COMMON POLYMORPHISMS IN HUMAN LANGERIN CHANGE SPECIFICITY JRNL TITL 2 FOR GLYCAN LIGANDS. JRNL REF J.BIOL.CHEM. V. 288 36762 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24217250 JRNL DOI 10.1074/JBC.M113.528000 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3358 - 4.8214 0.99 2626 146 0.1819 0.2140 REMARK 3 2 4.8214 - 3.8279 1.00 2598 144 0.1589 0.2045 REMARK 3 3 3.8279 - 3.3444 1.00 2615 110 0.1760 0.2252 REMARK 3 4 3.3444 - 3.0387 0.99 2584 144 0.1922 0.2359 REMARK 3 5 3.0387 - 2.8210 1.00 2590 118 0.2009 0.2884 REMARK 3 6 2.8210 - 2.6547 1.00 2620 132 0.1935 0.2565 REMARK 3 7 2.6547 - 2.5218 0.99 2574 132 0.1924 0.2530 REMARK 3 8 2.5218 - 2.4120 0.99 2535 126 0.1935 0.2649 REMARK 3 9 2.4120 - 2.3192 1.00 2602 150 0.2013 0.2716 REMARK 3 10 2.3192 - 2.2391 1.00 2570 148 0.2096 0.2829 REMARK 3 11 2.2391 - 2.1691 1.00 2599 131 0.2130 0.2898 REMARK 3 12 2.1691 - 2.1071 1.00 2582 140 0.2153 0.3254 REMARK 3 13 2.1071 - 2.0517 0.99 2556 141 0.2244 0.2623 REMARK 3 14 2.0517 - 2.0016 0.97 2482 146 0.2323 0.2960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4475 REMARK 3 ANGLE : 0.942 6053 REMARK 3 CHIRALITY : 0.073 605 REMARK 3 PLANARITY : 0.004 767 REMARK 3 DIHEDRAL : 12.594 1563 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NA REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : 0.31700 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3P5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 2.3-4.0 MG/ML REMARK 280 LANGERIN, 2.5 MM CACL2, 10-100 MM TRIS (PH 8.0), 25 MM NACL AND REMARK 280 50MM MEMAN. THE RESERVOIR SOLUTION CONTAINED 0.1 M HEPES (PH 7.0) REMARK 280 , 0.1-0.2 M MGCL2, AND 20-35% POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.18000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 193 REMARK 465 VAL A 194 REMARK 465 VAL A 195 REMARK 465 SER A 196 REMARK 465 GLN A 197 REMARK 465 SER A 326 REMARK 465 GLU A 327 REMARK 465 PRO A 328 REMARK 465 GLN B 193 REMARK 465 VAL B 194 REMARK 465 VAL B 195 REMARK 465 SER B 196 REMARK 465 GLN B 197 REMARK 465 SER B 326 REMARK 465 GLU B 327 REMARK 465 PRO B 328 REMARK 465 GLN C 193 REMARK 465 VAL C 194 REMARK 465 VAL C 195 REMARK 465 SER C 326 REMARK 465 GLU C 327 REMARK 465 PRO C 328 REMARK 465 GLN D 193 REMARK 465 VAL D 194 REMARK 465 VAL D 195 REMARK 465 SER D 196 REMARK 465 PRO D 325 REMARK 465 SER D 326 REMARK 465 GLU D 327 REMARK 465 PRO D 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 577 O HOH C 597 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 567 O HOH C 574 3654 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 288 83.73 51.82 REMARK 500 ASN A 292 27.01 -148.01 REMARK 500 PHE B 202 116.84 -160.70 REMARK 500 LYS B 299 -62.54 -124.64 REMARK 500 LYS C 299 -60.35 -121.01 REMARK 500 ASN D 292 29.07 -142.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 285 OE1 REMARK 620 2 ASN A 287 OD1 73.3 REMARK 620 3 GLU A 293 OE1 145.3 75.3 REMARK 620 4 ASN A 307 OD1 69.5 142.1 142.5 REMARK 620 5 ASP A 308 OD1 71.8 84.3 90.7 90.8 REMARK 620 6 ASP A 308 O 133.1 135.4 65.8 78.4 75.6 REMARK 620 7 MMA A 401 O4 73.5 79.8 115.0 83.0 144.7 135.8 REMARK 620 8 MMA A 401 O3 136.3 120.1 73.6 84.0 144.8 69.3 69.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 285 OE1 REMARK 620 2 ASN B 287 OD1 77.2 REMARK 620 3 GLU B 293 OE1 141.7 71.6 REMARK 620 4 ASN B 307 OD1 65.3 142.1 144.6 REMARK 620 5 ASP B 308 OD1 67.5 83.6 87.0 87.4 REMARK 620 6 ASP B 308 O 125.8 136.9 69.9 74.8 75.8 REMARK 620 7 MMA B 401 O3 136.6 120.1 79.7 86.0 146.5 70.8 REMARK 620 8 MMA B 401 O4 75.8 78.6 117.9 86.5 141.9 137.6 70.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 285 OE1 REMARK 620 2 ASN C 287 OD1 73.8 REMARK 620 3 GLU C 293 OE1 136.7 66.4 REMARK 620 4 ASN C 307 OD1 73.8 146.4 147.1 REMARK 620 5 ASP C 308 OD1 75.0 87.2 86.4 92.8 REMARK 620 6 ASP C 308 O 134.2 133.9 71.5 77.0 72.0 REMARK 620 7 MMA C 401 O3 135.5 115.0 79.0 83.1 144.9 73.1 REMARK 620 8 MMA C 401 O4 72.2 75.2 111.6 86.8 145.9 140.1 68.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 285 OE1 REMARK 620 2 ASN D 287 OD1 70.5 REMARK 620 3 GLU D 293 OE1 137.4 70.9 REMARK 620 4 ASN D 307 OD1 69.9 139.0 150.1 REMARK 620 5 ASP D 308 OD1 64.5 79.4 91.3 93.0 REMARK 620 6 ASP D 308 O 128.4 131.9 70.0 82.7 74.6 REMARK 620 7 MMA D 401 O3 143.7 117.6 72.4 89.3 148.9 74.9 REMARK 620 8 MMA D 401 O4 77.8 88.2 118.1 73.4 142.3 135.3 67.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N32 RELATED DB: PDB REMARK 900 RELATED ID: 4N33 RELATED DB: PDB REMARK 900 RELATED ID: 4N34 RELATED DB: PDB REMARK 900 RELATED ID: 4N35 RELATED DB: PDB REMARK 900 RELATED ID: 4N36 RELATED DB: PDB REMARK 900 RELATED ID: 4N38 RELATED DB: PDB DBREF 4N37 A 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 DBREF 4N37 B 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 DBREF 4N37 C 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 DBREF 4N37 D 193 328 UNP Q9UJ71 CLC4K_HUMAN 193 328 SEQADV 4N37 ALA A 278 UNP Q9UJ71 VAL 278 VARIANT SEQADV 4N37 ASP A 288 UNP Q9UJ71 ASN 288 ENGINEERED MUTATION SEQADV 4N37 ILE A 313 UNP Q9UJ71 LYS 313 ENGINEERED MUTATION SEQADV 4N37 ALA B 278 UNP Q9UJ71 VAL 278 VARIANT SEQADV 4N37 ASP B 288 UNP Q9UJ71 ASN 288 ENGINEERED MUTATION SEQADV 4N37 ILE B 313 UNP Q9UJ71 LYS 313 ENGINEERED MUTATION SEQADV 4N37 ALA C 278 UNP Q9UJ71 VAL 278 VARIANT SEQADV 4N37 ASP C 288 UNP Q9UJ71 ASN 288 ENGINEERED MUTATION SEQADV 4N37 ILE C 313 UNP Q9UJ71 LYS 313 ENGINEERED MUTATION SEQADV 4N37 ALA D 278 UNP Q9UJ71 VAL 278 VARIANT SEQADV 4N37 ASP D 288 UNP Q9UJ71 ASN 288 ENGINEERED MUTATION SEQADV 4N37 ILE D 313 UNP Q9UJ71 LYS 313 ENGINEERED MUTATION SEQRES 1 A 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 A 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 A 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 A 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 A 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 A 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 A 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 A 136 GLY GLU PRO ASN ASP ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 A 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 A 136 PRO CYS ASP ILE THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 A 136 TYR VAL PRO SER GLU PRO SEQRES 1 B 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 B 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 B 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 B 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 B 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 B 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 B 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 B 136 GLY GLU PRO ASN ASP ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 B 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 B 136 PRO CYS ASP ILE THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 B 136 TYR VAL PRO SER GLU PRO SEQRES 1 C 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 C 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 C 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 C 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 C 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 C 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 C 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 C 136 GLY GLU PRO ASN ASP ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 C 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 C 136 PRO CYS ASP ILE THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 C 136 TYR VAL PRO SER GLU PRO SEQRES 1 D 136 GLN VAL VAL SER GLN GLY TRP LYS TYR PHE LYS GLY ASN SEQRES 2 D 136 PHE TYR TYR PHE SER LEU ILE PRO LYS THR TRP TYR SER SEQRES 3 D 136 ALA GLU GLN PHE CYS VAL SER ARG ASN SER HIS LEU THR SEQRES 4 D 136 SER VAL THR SER GLU SER GLU GLN GLU PHE LEU TYR LYS SEQRES 5 D 136 THR ALA GLY GLY LEU ILE TYR TRP ILE GLY LEU THR LYS SEQRES 6 D 136 ALA GLY MET GLU GLY ASP TRP SER TRP VAL ASP ASP THR SEQRES 7 D 136 PRO PHE ASN LYS VAL GLN SER ALA ARG PHE TRP ILE PRO SEQRES 8 D 136 GLY GLU PRO ASN ASP ALA GLY ASN ASN GLU HIS CYS GLY SEQRES 9 D 136 ASN ILE LYS ALA PRO SER LEU GLN ALA TRP ASN ASP ALA SEQRES 10 D 136 PRO CYS ASP ILE THR PHE LEU PHE ILE CYS LYS ARG PRO SEQRES 11 D 136 TYR VAL PRO SER GLU PRO HET MMA A 401 13 HET CA A 402 1 HET MMA B 401 13 HET CA B 402 1 HET MMA C 401 13 HET CA C 402 1 HET MMA D 401 13 HET CA D 402 1 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM CA CALCIUM ION HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE FORMUL 5 MMA 4(C7 H14 O6) FORMUL 6 CA 4(CA 2+) FORMUL 13 HOH *474(H2 O) HELIX 1 1 THR A 215 SER A 225 1 11 HELIX 2 2 SER A 235 GLY A 247 1 13 HELIX 3 3 ASN A 273 ALA A 278 1 6 HELIX 4 4 ARG A 279 TRP A 281 5 3 HELIX 5 5 ASP A 288 ASN A 292 5 5 HELIX 6 6 THR B 215 ARG B 226 1 12 HELIX 7 7 SER B 235 GLY B 247 1 13 HELIX 8 8 ASN B 273 ALA B 278 1 6 HELIX 9 9 ARG B 279 TRP B 281 5 3 HELIX 10 10 ASP B 288 ASN B 292 5 5 HELIX 11 11 THR C 215 ARG C 226 1 12 HELIX 12 12 SER C 235 GLY C 247 1 13 HELIX 13 13 ASN C 273 ALA C 278 1 6 HELIX 14 14 ARG C 279 TRP C 281 5 3 HELIX 15 15 ASP C 288 ASN C 292 5 5 HELIX 16 16 THR D 215 ARG D 226 1 12 HELIX 17 17 SER D 235 GLY D 247 1 13 HELIX 18 18 ASN D 273 ALA D 278 1 6 HELIX 19 19 ARG D 279 TRP D 281 5 3 HELIX 20 20 ASP D 288 ASN D 292 5 5 SHEET 1 A 5 LYS A 200 PHE A 202 0 SHEET 2 A 5 ASN A 205 PHE A 209 -1 O ASN A 205 N PHE A 202 SHEET 3 A 5 LEU A 316 PRO A 322 -1 O ARG A 321 N PHE A 206 SHEET 4 A 5 TYR A 251 ALA A 258 1 N TRP A 252 O LEU A 316 SHEET 5 A 5 ASP A 263 TRP A 266 -1 O ASP A 263 N ALA A 258 SHEET 1 B 5 HIS A 229 LEU A 230 0 SHEET 2 B 5 LEU A 316 PRO A 322 -1 O LYS A 320 N HIS A 229 SHEET 3 B 5 TYR A 251 ALA A 258 1 N TRP A 252 O LEU A 316 SHEET 4 B 5 CYS A 295 ILE A 298 -1 O ILE A 298 N TYR A 251 SHEET 5 B 5 TRP A 306 ALA A 309 -1 O ALA A 309 N CYS A 295 SHEET 1 C 5 LYS B 200 PHE B 202 0 SHEET 2 C 5 ASN B 205 PHE B 209 -1 O TYR B 207 N LYS B 200 SHEET 3 C 5 LEU B 316 PRO B 322 -1 O ARG B 321 N PHE B 206 SHEET 4 C 5 TYR B 251 ALA B 258 1 N TRP B 252 O LEU B 316 SHEET 5 C 5 ASP B 263 TRP B 266 -1 O SER B 265 N THR B 256 SHEET 1 D 5 HIS B 229 LEU B 230 0 SHEET 2 D 5 LEU B 316 PRO B 322 -1 O LYS B 320 N HIS B 229 SHEET 3 D 5 TYR B 251 ALA B 258 1 N TRP B 252 O LEU B 316 SHEET 4 D 5 CYS B 295 ILE B 298 -1 O ILE B 298 N TYR B 251 SHEET 5 D 5 TRP B 306 ALA B 309 -1 O ALA B 309 N CYS B 295 SHEET 1 E 5 TRP C 199 PHE C 202 0 SHEET 2 E 5 ASN C 205 PHE C 209 -1 O TYR C 207 N LYS C 200 SHEET 3 E 5 LEU C 316 PRO C 322 -1 O ARG C 321 N PHE C 206 SHEET 4 E 5 TYR C 251 ALA C 258 1 N TRP C 252 O LEU C 316 SHEET 5 E 5 ASP C 263 TRP C 266 -1 O ASP C 263 N ALA C 258 SHEET 1 F 5 HIS C 229 LEU C 230 0 SHEET 2 F 5 LEU C 316 PRO C 322 -1 O LYS C 320 N HIS C 229 SHEET 3 F 5 TYR C 251 ALA C 258 1 N TRP C 252 O LEU C 316 SHEET 4 F 5 CYS C 295 ILE C 298 -1 O ILE C 298 N TYR C 251 SHEET 5 F 5 TRP C 306 ALA C 309 -1 O ALA C 309 N CYS C 295 SHEET 1 G 5 TRP D 199 PHE D 202 0 SHEET 2 G 5 ASN D 205 PHE D 209 -1 O TYR D 207 N LYS D 200 SHEET 3 G 5 LEU D 316 PRO D 322 -1 O ARG D 321 N PHE D 206 SHEET 4 G 5 TYR D 251 ALA D 258 1 N TRP D 252 O LEU D 316 SHEET 5 G 5 ASP D 263 TRP D 266 -1 O SER D 265 N THR D 256 SHEET 1 H 5 HIS D 229 LEU D 230 0 SHEET 2 H 5 LEU D 316 PRO D 322 -1 O LYS D 320 N HIS D 229 SHEET 3 H 5 TYR D 251 ALA D 258 1 N TRP D 252 O LEU D 316 SHEET 4 H 5 CYS D 295 ILE D 298 -1 O ILE D 298 N TYR D 251 SHEET 5 H 5 TRP D 306 ALA D 309 -1 O ALA D 309 N CYS D 295 SSBOND 1 CYS A 223 CYS A 319 1555 1555 2.04 SSBOND 2 CYS A 295 CYS A 311 1555 1555 2.05 SSBOND 3 CYS B 223 CYS B 319 1555 1555 2.04 SSBOND 4 CYS B 295 CYS B 311 1555 1555 2.05 SSBOND 5 CYS C 223 CYS C 319 1555 1555 2.05 SSBOND 6 CYS C 295 CYS C 311 1555 1555 2.04 SSBOND 7 CYS D 223 CYS D 319 1555 1555 2.03 SSBOND 8 CYS D 295 CYS D 311 1555 1555 2.04 LINK OE1 GLU A 285 CA CA A 402 1555 1555 2.44 LINK OD1 ASN A 287 CA CA A 402 1555 1555 2.53 LINK OE1 GLU A 293 CA CA A 402 1555 1555 2.41 LINK OD1 ASN A 307 CA CA A 402 1555 1555 2.44 LINK OD1 ASP A 308 CA CA A 402 1555 1555 2.41 LINK O ASP A 308 CA CA A 402 1555 1555 2.46 LINK O4 MMA A 401 CA CA A 402 1555 1555 2.51 LINK O3 MMA A 401 CA CA A 402 1555 1555 2.52 LINK OE1 GLU B 285 CA CA B 402 1555 1555 2.46 LINK OD1 ASN B 287 CA CA B 402 1555 1555 2.46 LINK OE1 GLU B 293 CA CA B 402 1555 1555 2.44 LINK OD1 ASN B 307 CA CA B 402 1555 1555 2.43 LINK OD1 ASP B 308 CA CA B 402 1555 1555 2.45 LINK O ASP B 308 CA CA B 402 1555 1555 2.49 LINK O3 MMA B 401 CA CA B 402 1555 1555 2.52 LINK O4 MMA B 401 CA CA B 402 1555 1555 2.54 LINK OE1 GLU C 285 CA CA C 402 1555 1555 2.48 LINK OD1 ASN C 287 CA CA C 402 1555 1555 2.44 LINK OE1 GLU C 293 CA CA C 402 1555 1555 2.43 LINK OD1 ASN C 307 CA CA C 402 1555 1555 2.39 LINK OD1 ASP C 308 CA CA C 402 1555 1555 2.41 LINK O ASP C 308 CA CA C 402 1555 1555 2.49 LINK O3 MMA C 401 CA CA C 402 1555 1555 2.48 LINK O4 MMA C 401 CA CA C 402 1555 1555 2.54 LINK OE1 GLU D 285 CA CA D 402 1555 1555 2.47 LINK OD1 ASN D 287 CA CA D 402 1555 1555 2.47 LINK OE1 GLU D 293 CA CA D 402 1555 1555 2.46 LINK OD1 ASN D 307 CA CA D 402 1555 1555 2.45 LINK OD1 ASP D 308 CA CA D 402 1555 1555 2.45 LINK O ASP D 308 CA CA D 402 1555 1555 2.48 LINK O3 MMA D 401 CA CA D 402 1555 1555 2.50 LINK O4 MMA D 401 CA CA D 402 1555 1555 2.56 CISPEP 1 GLU A 285 PRO A 286 0 -2.41 CISPEP 2 GLU B 285 PRO B 286 0 -1.66 CISPEP 3 GLU C 285 PRO C 286 0 -3.69 CISPEP 4 GLU D 285 PRO D 286 0 -0.56 CRYST1 79.920 79.920 90.360 90.00 90.00 90.00 P 42 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011067 0.00000