HEADER TRANSLATION 07-OCT-13 4N3S TITLE CRYSTAL STRUCTURE OF EUKARYOTIC TRANSLATION INITIATION FACTOR EIF5B TITLE 2 (399-852) FROM SACCHAROMYCES CEREVISIAE, APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 5B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 399-852; COMPND 5 SYNONYM: EIF-5B, TRANSLATION INITIATION FACTOR IF-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: FUN12, YAL035W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TRANSLATION INITIATION, GTPASE, EIF5B/IF2, SUBUNIT JOINING, RIBOSOME, KEYWDS 2 TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR B.KUHLE,R.FICNER REVDAT 5 20-SEP-23 4N3S 1 REMARK SEQADV REVDAT 4 07-MAR-18 4N3S 1 REMARK REVDAT 3 06-AUG-14 4N3S 1 AUTHOR REVDAT 2 23-JUL-14 4N3S 1 REVDAT 1 09-JUL-14 4N3S 0 JRNL AUTH B.KUHLE,R.FICNER JRNL TITL EIF5B EMPLOYS A NOVEL DOMAIN RELEASE MECHANISM TO CATALYZE JRNL TITL 2 RIBOSOMAL SUBUNIT JOINING. JRNL REF EMBO J. V. 33 1177 2014 JRNL REFN ISSN 0261-4189 JRNL PMID 24686316 JRNL DOI 10.1002/EMBJ.201387344 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 93326 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6359 - 4.9705 0.95 4560 241 0.1364 0.1502 REMARK 3 2 4.9705 - 3.9461 0.94 4449 234 0.1018 0.1406 REMARK 3 3 3.9461 - 3.4475 0.95 4452 235 0.1232 0.1688 REMARK 3 4 3.4475 - 3.1324 0.95 4454 234 0.1407 0.1579 REMARK 3 5 3.1324 - 2.9079 0.94 4428 231 0.1684 0.1975 REMARK 3 6 2.9079 - 2.7365 0.95 4454 235 0.1885 0.2031 REMARK 3 7 2.7365 - 2.5995 0.95 4444 234 0.1985 0.2196 REMARK 3 8 2.5995 - 2.4863 0.95 4415 232 0.1994 0.2287 REMARK 3 9 2.4863 - 2.3906 0.95 4408 232 0.2125 0.2695 REMARK 3 10 2.3906 - 2.3081 0.95 4442 234 0.2116 0.2514 REMARK 3 11 2.3081 - 2.2360 0.95 4415 232 0.2126 0.2300 REMARK 3 12 2.2360 - 2.1721 0.95 4423 233 0.2223 0.2342 REMARK 3 13 2.1721 - 2.1149 0.95 4425 233 0.2291 0.2473 REMARK 3 14 2.1149 - 2.0633 0.95 4436 234 0.2381 0.2717 REMARK 3 15 2.0633 - 2.0164 0.95 4405 232 0.2456 0.2523 REMARK 3 16 2.0164 - 1.9735 0.95 4434 233 0.2598 0.2632 REMARK 3 17 1.9735 - 1.9340 0.95 4362 229 0.2824 0.2872 REMARK 3 18 1.9340 - 1.8975 0.95 4426 233 0.2913 0.2866 REMARK 3 19 1.8975 - 1.8636 0.95 4466 235 0.3072 0.2940 REMARK 3 20 1.8636 - 1.8320 0.95 4358 231 0.3092 0.3568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.2000 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7088 REMARK 3 ANGLE : 1.141 9573 REMARK 3 CHIRALITY : 0.046 1123 REMARK 3 PLANARITY : 0.005 1220 REMARK 3 DIHEDRAL : 15.508 2684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1509 -31.7881 7.8608 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.2406 REMARK 3 T33: 0.2573 T12: -0.0112 REMARK 3 T13: 0.0882 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.3467 L22: 0.6635 REMARK 3 L33: 0.1446 L12: -0.4549 REMARK 3 L13: 0.0339 L23: 0.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.2013 S12: -0.0942 S13: -0.1991 REMARK 3 S21: -0.1737 S22: 0.2006 S23: 0.0298 REMARK 3 S31: -0.1359 S32: 0.0239 S33: -0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 535 THROUGH 729 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9286 -26.2679 9.3898 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.1930 REMARK 3 T33: 0.1727 T12: -0.0088 REMARK 3 T13: 0.0671 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.8556 L22: 1.0186 REMARK 3 L33: 0.1082 L12: -0.1661 REMARK 3 L13: -0.0956 L23: 0.0631 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: 0.0136 S13: -0.1430 REMARK 3 S21: -0.1980 S22: 0.0269 S23: -0.0249 REMARK 3 S31: -0.0734 S32: -0.0107 S33: -0.1978 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 730 THROUGH 852 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4903 -18.2152 11.3350 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.4377 REMARK 3 T33: 0.3687 T12: -0.0608 REMARK 3 T13: -0.0123 T23: 0.0707 REMARK 3 L TENSOR REMARK 3 L11: 0.2500 L22: 0.2349 REMARK 3 L33: 0.2868 L12: 0.1670 REMARK 3 L13: -0.2548 L23: 0.0062 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: 0.1814 S13: 0.0836 REMARK 3 S21: -0.0604 S22: 0.1162 S23: 0.3100 REMARK 3 S31: 0.0491 S32: -0.2766 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 401 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3553 2.7124 -27.5306 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.2324 REMARK 3 T33: 0.2843 T12: -0.0108 REMARK 3 T13: 0.0057 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 0.1195 L22: 0.0491 REMARK 3 L33: 0.1105 L12: -0.0070 REMARK 3 L13: -0.1008 L23: -0.0384 REMARK 3 S TENSOR REMARK 3 S11: 0.1147 S12: -0.0569 S13: 0.1264 REMARK 3 S21: -0.0923 S22: -0.1508 S23: 0.1423 REMARK 3 S31: -0.0759 S32: 0.2342 S33: -0.0063 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 462 THROUGH 604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6123 -8.8128 -21.9293 REMARK 3 T TENSOR REMARK 3 T11: 0.1854 T22: 0.2473 REMARK 3 T33: 0.2645 T12: -0.0026 REMARK 3 T13: -0.0345 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.0305 L22: 0.5188 REMARK 3 L33: 0.6696 L12: -0.2440 REMARK 3 L13: 0.0107 L23: -0.2756 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: -0.3023 S13: -0.1589 REMARK 3 S21: -0.0853 S22: -0.0286 S23: 0.2438 REMARK 3 S31: 0.0076 S32: -0.0258 S33: 0.0036 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 605 THROUGH 761 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3164 -9.4081 -26.1156 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.2001 REMARK 3 T33: 0.1273 T12: -0.0058 REMARK 3 T13: -0.0238 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.5550 L22: 0.4447 REMARK 3 L33: 0.3446 L12: -0.0604 REMARK 3 L13: -0.0141 L23: 0.1890 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.1093 S13: 0.0082 REMARK 3 S21: 0.0436 S22: -0.0388 S23: -0.0953 REMARK 3 S31: 0.0839 S32: -0.0019 S33: -0.0357 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 762 THROUGH 852 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5540 -37.4094 -29.2565 REMARK 3 T TENSOR REMARK 3 T11: 0.3342 T22: 0.2605 REMARK 3 T33: 0.4193 T12: -0.0554 REMARK 3 T13: -0.0245 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.1106 L22: 0.1030 REMARK 3 L33: 0.1462 L12: 0.0715 REMARK 3 L13: 0.1683 L23: -0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.0575 S13: -0.2596 REMARK 3 S21: -0.0270 S22: 0.0890 S23: 0.1664 REMARK 3 S31: 0.0217 S32: 0.1623 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 4083 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.826580 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 1G7R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 % PEG 3350 AND 20 MM MGCL2., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.75500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.37750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.13250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 396 REMARK 465 HIS A 397 REMARK 465 MET A 398 REMARK 465 ASN A 399 REMARK 465 LYS A 400 REMARK 465 VAL A 414 REMARK 465 ASP A 415 REMARK 465 THR A 416 REMARK 465 GLY A 417 REMARK 465 LYS A 418 REMARK 465 THR A 419 REMARK 465 GLN A 431 REMARK 465 GLY A 432 REMARK 465 GLY A 433 REMARK 465 GLU A 434 REMARK 465 ALA A 435 REMARK 465 SER B 396 REMARK 465 HIS B 397 REMARK 465 MET B 398 REMARK 465 ASN B 399 REMARK 465 LYS B 400 REMARK 465 VAL B 414 REMARK 465 ASP B 415 REMARK 465 THR B 416 REMARK 465 GLY B 417 REMARK 465 LYS B 418 REMARK 465 THR B 419 REMARK 465 GLY B 432 REMARK 465 GLY B 433 REMARK 465 GLU B 434 REMARK 465 ALA B 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LYS B 401 CG CD CE NZ REMARK 470 GLN B 431 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL A 649 CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 628 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 901 DBREF 4N3S A 399 852 UNP P39730 IF2P_YEAST 399 852 DBREF 4N3S B 399 852 UNP P39730 IF2P_YEAST 399 852 SEQADV 4N3S SER A 396 UNP P39730 EXPRESSION TAG SEQADV 4N3S HIS A 397 UNP P39730 EXPRESSION TAG SEQADV 4N3S MET A 398 UNP P39730 EXPRESSION TAG SEQADV 4N3S SER B 396 UNP P39730 EXPRESSION TAG SEQADV 4N3S HIS B 397 UNP P39730 EXPRESSION TAG SEQADV 4N3S MET B 398 UNP P39730 EXPRESSION TAG SEQRES 1 A 457 SER HIS MET ASN LYS LYS ASP LEU ARG SER PRO ILE CYS SEQRES 2 A 457 CYS ILE LEU GLY HIS VAL ASP THR GLY LYS THR LYS LEU SEQRES 3 A 457 LEU ASP LYS ILE ARG GLN THR ASN VAL GLN GLY GLY GLU SEQRES 4 A 457 ALA GLY GLY ILE THR GLN GLN ILE GLY ALA THR TYR PHE SEQRES 5 A 457 PRO ILE ASP ALA ILE LYS ALA LYS THR LYS VAL MET ALA SEQRES 6 A 457 GLU TYR GLU LYS GLN THR PHE ASP VAL PRO GLY LEU LEU SEQRES 7 A 457 VAL ILE ASP THR PRO GLY HIS GLU SER PHE SER ASN LEU SEQRES 8 A 457 ARG SER ARG GLY SER SER LEU CYS ASN ILE ALA ILE LEU SEQRES 9 A 457 VAL ILE ASP ILE MET HIS GLY LEU GLU GLN GLN THR ILE SEQRES 10 A 457 GLU SER ILE LYS LEU LEU ARG ASP ARG LYS ALA PRO PHE SEQRES 11 A 457 VAL VAL ALA LEU ASN LYS ILE ASP ARG LEU TYR ASP TRP SEQRES 12 A 457 LYS ALA ILE PRO ASN ASN SER PHE ARG ASP SER PHE ALA SEQRES 13 A 457 LYS GLN SER ARG ALA VAL GLN GLU GLU PHE GLN SER ARG SEQRES 14 A 457 TYR SER LYS ILE GLN LEU GLU LEU ALA GLU GLN GLY LEU SEQRES 15 A 457 ASN SER GLU LEU TYR PHE GLN ASN LYS ASN MET SER LYS SEQRES 16 A 457 TYR VAL SER ILE VAL PRO THR SER ALA VAL THR GLY GLU SEQRES 17 A 457 GLY VAL PRO ASP LEU LEU TRP LEU LEU LEU GLU LEU THR SEQRES 18 A 457 GLN LYS ARG MET SER LYS GLN LEU MET TYR LEU SER HIS SEQRES 19 A 457 VAL GLU ALA THR ILE LEU GLU VAL LYS VAL VAL GLU GLY SEQRES 20 A 457 PHE GLY THR THR ILE ASP VAL ILE LEU SER ASN GLY TYR SEQRES 21 A 457 LEU ARG GLU GLY ASP ARG ILE VAL LEU CYS GLY MET ASN SEQRES 22 A 457 GLY PRO ILE VAL THR ASN ILE ARG ALA LEU LEU THR PRO SEQRES 23 A 457 GLN PRO LEU ARG GLU LEU ARG LEU LYS SER GLU TYR VAL SEQRES 24 A 457 HIS HIS LYS GLU VAL LYS ALA ALA LEU GLY VAL LYS ILE SEQRES 25 A 457 ALA ALA ASN ASP LEU GLU LYS ALA VAL SER GLY SER ARG SEQRES 26 A 457 LEU LEU VAL VAL GLY PRO GLU ASP ASP GLU ASP GLU LEU SEQRES 27 A 457 MET ASP ASP VAL MET ASP ASP LEU THR GLY LEU LEU ASP SEQRES 28 A 457 SER VAL ASP THR THR GLY LYS GLY VAL VAL VAL GLN ALA SEQRES 29 A 457 SER THR LEU GLY SER LEU GLU ALA LEU LEU ASP PHE LEU SEQRES 30 A 457 LYS ASP MET LYS ILE PRO VAL MET SER ILE GLY LEU GLY SEQRES 31 A 457 PRO VAL TYR LYS ARG ASP VAL MET LYS ALA SER THR MET SEQRES 32 A 457 LEU GLU LYS ALA PRO GLU TYR ALA VAL MET LEU CYS PHE SEQRES 33 A 457 ASP VAL LYS VAL ASP LYS GLU ALA GLU GLN TYR ALA GLU SEQRES 34 A 457 GLN GLU GLY ILE LYS ILE PHE ASN ALA ASP VAL ILE TYR SEQRES 35 A 457 HIS LEU PHE ASP SER PHE THR ALA TYR GLN GLU LYS LEU SEQRES 36 A 457 LEU GLU SEQRES 1 B 457 SER HIS MET ASN LYS LYS ASP LEU ARG SER PRO ILE CYS SEQRES 2 B 457 CYS ILE LEU GLY HIS VAL ASP THR GLY LYS THR LYS LEU SEQRES 3 B 457 LEU ASP LYS ILE ARG GLN THR ASN VAL GLN GLY GLY GLU SEQRES 4 B 457 ALA GLY GLY ILE THR GLN GLN ILE GLY ALA THR TYR PHE SEQRES 5 B 457 PRO ILE ASP ALA ILE LYS ALA LYS THR LYS VAL MET ALA SEQRES 6 B 457 GLU TYR GLU LYS GLN THR PHE ASP VAL PRO GLY LEU LEU SEQRES 7 B 457 VAL ILE ASP THR PRO GLY HIS GLU SER PHE SER ASN LEU SEQRES 8 B 457 ARG SER ARG GLY SER SER LEU CYS ASN ILE ALA ILE LEU SEQRES 9 B 457 VAL ILE ASP ILE MET HIS GLY LEU GLU GLN GLN THR ILE SEQRES 10 B 457 GLU SER ILE LYS LEU LEU ARG ASP ARG LYS ALA PRO PHE SEQRES 11 B 457 VAL VAL ALA LEU ASN LYS ILE ASP ARG LEU TYR ASP TRP SEQRES 12 B 457 LYS ALA ILE PRO ASN ASN SER PHE ARG ASP SER PHE ALA SEQRES 13 B 457 LYS GLN SER ARG ALA VAL GLN GLU GLU PHE GLN SER ARG SEQRES 14 B 457 TYR SER LYS ILE GLN LEU GLU LEU ALA GLU GLN GLY LEU SEQRES 15 B 457 ASN SER GLU LEU TYR PHE GLN ASN LYS ASN MET SER LYS SEQRES 16 B 457 TYR VAL SER ILE VAL PRO THR SER ALA VAL THR GLY GLU SEQRES 17 B 457 GLY VAL PRO ASP LEU LEU TRP LEU LEU LEU GLU LEU THR SEQRES 18 B 457 GLN LYS ARG MET SER LYS GLN LEU MET TYR LEU SER HIS SEQRES 19 B 457 VAL GLU ALA THR ILE LEU GLU VAL LYS VAL VAL GLU GLY SEQRES 20 B 457 PHE GLY THR THR ILE ASP VAL ILE LEU SER ASN GLY TYR SEQRES 21 B 457 LEU ARG GLU GLY ASP ARG ILE VAL LEU CYS GLY MET ASN SEQRES 22 B 457 GLY PRO ILE VAL THR ASN ILE ARG ALA LEU LEU THR PRO SEQRES 23 B 457 GLN PRO LEU ARG GLU LEU ARG LEU LYS SER GLU TYR VAL SEQRES 24 B 457 HIS HIS LYS GLU VAL LYS ALA ALA LEU GLY VAL LYS ILE SEQRES 25 B 457 ALA ALA ASN ASP LEU GLU LYS ALA VAL SER GLY SER ARG SEQRES 26 B 457 LEU LEU VAL VAL GLY PRO GLU ASP ASP GLU ASP GLU LEU SEQRES 27 B 457 MET ASP ASP VAL MET ASP ASP LEU THR GLY LEU LEU ASP SEQRES 28 B 457 SER VAL ASP THR THR GLY LYS GLY VAL VAL VAL GLN ALA SEQRES 29 B 457 SER THR LEU GLY SER LEU GLU ALA LEU LEU ASP PHE LEU SEQRES 30 B 457 LYS ASP MET LYS ILE PRO VAL MET SER ILE GLY LEU GLY SEQRES 31 B 457 PRO VAL TYR LYS ARG ASP VAL MET LYS ALA SER THR MET SEQRES 32 B 457 LEU GLU LYS ALA PRO GLU TYR ALA VAL MET LEU CYS PHE SEQRES 33 B 457 ASP VAL LYS VAL ASP LYS GLU ALA GLU GLN TYR ALA GLU SEQRES 34 B 457 GLN GLU GLY ILE LYS ILE PHE ASN ALA ASP VAL ILE TYR SEQRES 35 B 457 HIS LEU PHE ASP SER PHE THR ALA TYR GLN GLU LYS LEU SEQRES 36 B 457 LEU GLU HET GOL A 901 6 HET EDO A 902 4 HET EDO A 903 4 HET EDO A 904 4 HET GOL B 901 6 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *775(H2 O) HELIX 1 1 LEU A 421 ARG A 426 1 6 HELIX 2 2 ILE A 449 LYS A 457 1 9 HELIX 3 3 VAL A 458 TYR A 462 5 5 HELIX 4 4 HIS A 480 SER A 484 5 5 HELIX 5 5 LEU A 486 SER A 488 5 3 HELIX 6 6 ARG A 489 CYS A 494 1 6 HELIX 7 7 GLU A 508 LYS A 522 1 15 HELIX 8 8 LYS A 531 LEU A 535 5 5 HELIX 9 9 SER A 545 LYS A 552 1 8 HELIX 10 10 SER A 554 GLU A 574 1 21 HELIX 11 11 PHE A 583 ASN A 585 5 3 HELIX 12 12 GLY A 604 MET A 620 1 17 HELIX 13 13 LEU A 684 LEU A 689 1 6 HELIX 14 14 ASP A 729 SER A 747 1 19 HELIX 15 15 THR A 761 MET A 775 1 15 HELIX 16 16 TYR A 788 THR A 797 1 10 HELIX 17 17 THR A 797 ALA A 802 1 6 HELIX 18 18 ASP A 816 GLY A 827 1 12 HELIX 19 19 VAL A 835 GLU A 852 1 18 HELIX 20 20 ILE B 449 LYS B 457 1 9 HELIX 21 21 VAL B 458 TYR B 462 5 5 HELIX 22 22 HIS B 480 SER B 484 5 5 HELIX 23 23 LEU B 486 SER B 488 5 3 HELIX 24 24 ARG B 489 CYS B 494 1 6 HELIX 25 25 GLU B 508 LYS B 522 1 15 HELIX 26 26 LYS B 531 LEU B 535 5 5 HELIX 27 27 SER B 545 LYS B 552 1 8 HELIX 28 28 SER B 554 GLU B 574 1 21 HELIX 29 29 PHE B 583 ASN B 585 5 3 HELIX 30 30 GLY B 604 MET B 620 1 17 HELIX 31 31 SER B 621 MET B 625 5 5 HELIX 32 32 LEU B 684 LEU B 689 1 6 HELIX 33 33 ASP B 729 MET B 738 1 10 HELIX 34 34 MET B 738 SER B 747 1 10 HELIX 35 35 THR B 761 MET B 775 1 15 HELIX 36 36 TYR B 788 MET B 793 1 6 HELIX 37 37 LYS B 794 SER B 796 5 3 HELIX 38 38 THR B 797 ALA B 802 1 6 HELIX 39 39 PRO B 803 TYR B 805 5 3 HELIX 40 40 ASP B 816 GLY B 827 1 12 HELIX 41 41 VAL B 835 LEU B 851 1 17 SHEET 1 A 8 THR A 439 GLN A 440 0 SHEET 2 A 8 ALA A 444 PRO A 448 -1 O TYR A 446 N THR A 439 SHEET 3 A 8 GLY A 471 ILE A 475 -1 O LEU A 472 N PHE A 447 SHEET 4 A 8 ILE A 407 LEU A 411 1 N CYS A 408 O ILE A 475 SHEET 5 A 8 ILE A 496 ASP A 502 1 O ILE A 498 N LEU A 411 SHEET 6 A 8 PHE A 525 ASN A 530 1 O VAL A 526 N LEU A 499 SHEET 7 A 8 TYR A 591 PRO A 596 1 O VAL A 595 N VAL A 527 SHEET 8 A 8 ASN A 578 LEU A 581 1 N GLU A 580 O ILE A 594 SHEET 1 B 5 GLU A 631 VAL A 640 0 SHEET 2 B 5 GLY A 644 ASN A 653 -1 O ASP A 648 N LEU A 635 SHEET 3 B 5 LEU A 703 ALA A 709 -1 O LEU A 703 N LEU A 651 SHEET 4 B 5 GLY A 669 PRO A 681 -1 N ARG A 676 O ALA A 708 SHEET 5 B 5 TYR A 693 HIS A 696 -1 O VAL A 694 N THR A 680 SHEET 1 C 6 GLU A 631 VAL A 640 0 SHEET 2 C 6 GLY A 644 ASN A 653 -1 O ASP A 648 N LEU A 635 SHEET 3 C 6 LEU A 703 ALA A 709 -1 O LEU A 703 N LEU A 651 SHEET 4 C 6 GLY A 669 PRO A 681 -1 N ARG A 676 O ALA A 708 SHEET 5 C 6 ARG A 661 GLY A 666 -1 N LEU A 664 O ILE A 671 SHEET 6 C 6 LEU A 722 VAL A 723 -1 O LEU A 722 N VAL A 663 SHEET 1 D 2 TYR A 655 ARG A 657 0 SHEET 2 D 2 GLU A 698 LYS A 700 -1 O VAL A 699 N LEU A 656 SHEET 1 E 4 VAL A 779 SER A 781 0 SHEET 2 E 4 VAL A 755 ALA A 759 1 N VAL A 757 O SER A 781 SHEET 3 E 4 VAL A 807 PHE A 811 1 O LEU A 809 N VAL A 756 SHEET 4 E 4 LYS A 829 ALA A 833 1 O PHE A 831 N CYS A 810 SHEET 1 F 8 THR B 439 GLN B 440 0 SHEET 2 F 8 ALA B 444 PRO B 448 -1 O TYR B 446 N THR B 439 SHEET 3 F 8 GLY B 471 ILE B 475 -1 O VAL B 474 N THR B 445 SHEET 4 F 8 ILE B 407 LEU B 411 1 N CYS B 408 O LEU B 473 SHEET 5 F 8 ILE B 496 ASP B 502 1 O ILE B 498 N LEU B 411 SHEET 6 F 8 PHE B 525 ASN B 530 1 O VAL B 526 N LEU B 499 SHEET 7 F 8 TYR B 591 PRO B 596 1 O SER B 593 N VAL B 527 SHEET 8 F 8 ASN B 578 LEU B 581 1 N ASN B 578 O VAL B 592 SHEET 1 G 5 GLU B 631 VAL B 640 0 SHEET 2 G 5 GLY B 644 ASN B 653 -1 O ASP B 648 N LEU B 635 SHEET 3 G 5 LEU B 703 ALA B 708 -1 O LEU B 703 N LEU B 651 SHEET 4 G 5 ALA B 677 PRO B 681 -1 N LEU B 679 O LYS B 706 SHEET 5 G 5 TYR B 693 HIS B 695 -1 O VAL B 694 N THR B 680 SHEET 1 H 2 TYR B 655 ARG B 657 0 SHEET 2 H 2 GLU B 698 LYS B 700 -1 O VAL B 699 N LEU B 656 SHEET 1 I 3 GLY B 669 ASN B 674 0 SHEET 2 I 3 ARG B 661 GLY B 666 -1 N LEU B 664 O ILE B 671 SHEET 3 I 3 LEU B 721 VAL B 723 -1 O LEU B 722 N VAL B 663 SHEET 1 J 4 VAL B 779 LEU B 784 0 SHEET 2 J 4 VAL B 755 ALA B 759 1 N VAL B 757 O SER B 781 SHEET 3 J 4 VAL B 807 PHE B 811 1 O LEU B 809 N VAL B 756 SHEET 4 J 4 LYS B 829 ALA B 833 1 O PHE B 831 N CYS B 810 CISPEP 1 ALA A 701 ALA A 702 0 6.27 CISPEP 2 ALA B 701 ALA B 702 0 0.67 SITE 1 AC1 5 ARG A 661 VAL A 724 GLU A 730 HOH A1156 SITE 2 AC1 5 HOH A1224 SITE 1 AC2 7 LYS A 690 HOH A1004 HOH A1193 HOH A1284 SITE 2 AC2 7 PHE B 643 GLY B 644 HOH B1048 SITE 1 AC3 4 LEU A 635 GLU A 636 VAL A 637 SER A 717 SITE 1 AC4 3 LEU A 517 ALA A 767 HOH A1207 SITE 1 AC5 6 LEU B 403 ASP B 468 VAL B 469 PRO B 470 SITE 2 AC5 6 HOH B1338 HOH B1344 CRYST1 118.010 118.010 77.510 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008474 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012902 0.00000