HEADER TRANSFERASE 08-OCT-13 4N46 OBSLTE 07-OCT-15 4N46 4XL4 TITLE CRYSTAL STRUCTURE OF THIOLASE FROM CLOSTRIDIUM ACETOBUTYLICUM IN TITLE 2 COMPLEX WITH COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COA ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM; SOURCE 3 ORGANISM_TAXID: 863638; SOURCE 4 STRAIN: EA 2018; SOURCE 5 GENE: CEA_G2880; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS ALPHA/BETA/ALPHA/BETA/ALPHA DOMAIN, ACETYL-COA ACETYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KIM,S.C.HA,J.W.AHN,E.J.KIM,J.H.LIM,K.J.KIM REVDAT 2 07-OCT-15 4N46 1 OBSLTE REVDAT 1 08-OCT-14 4N46 0 JRNL AUTH S.KIM,S.C.HA,J.W.AHN,E.J.KIM,J.H.LIM,H.C.SON,Y.S.RYU, JRNL AUTH 2 S.K.LEE,K.J.KIM JRNL TITL STRUCTURAL INSIGHT INTO REDOX-SWITCH REGULATORY MECHANISM OF JRNL TITL 2 THIOLASE FROM THE N-BUTANOL SYNTHESIZING BACTERIUM, JRNL TITL 3 CLOSTRIDIUM ACETOBUTYLICUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 147194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6635 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 334 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 678 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : 2.04000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5972 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5908 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8072 ; 2.031 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13616 ; 0.962 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 782 ; 7.007 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;36.470 ;25.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1042 ;15.067 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.393 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.246 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6754 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1216 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3136 ; 2.836 ; 2.298 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3133 ; 2.831 ; 2.297 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3914 ; 4.647 ; 3.441 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4N46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-13. REMARK 100 THE RCSB ID CODE IS RCSB082729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.23985 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163498 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : 0.33100 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4N45 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, K-CITRATE, NACL, PH 4.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 101.64150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.16100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 101.64150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.16100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 950 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 393 REMARK 465 GLU A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 LEU B 393 REMARK 465 GLU B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 173 CG GLU A 173 CD 0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 217 CG - CD - OE1 ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU B 92 CB - CG - CD1 ANGL. DEV. = 10.6 DEGREES REMARK 500 GLU B 217 CG - CD - OE1 ANGL. DEV. = 13.5 DEGREES REMARK 500 CYS B 252 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 LEU B 377 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 -118.24 -117.27 REMARK 500 ASN A 64 71.75 46.89 REMARK 500 VAL A 87 -127.31 44.41 REMARK 500 ARG A 133 -59.14 69.17 REMARK 500 ASP A 214 13.80 -143.18 REMARK 500 ILE A 287 50.62 -146.10 REMARK 500 GLU A 317 66.97 -107.27 REMARK 500 LYS B 19 -114.99 -118.40 REMARK 500 ASN B 55 118.58 -168.73 REMARK 500 ASN B 64 73.52 44.95 REMARK 500 VAL B 87 -128.46 47.52 REMARK 500 ARG B 133 -59.63 71.60 REMARK 500 ILE B 287 62.69 -113.29 REMARK 500 GLU B 317 69.84 -109.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 279 SER A 280 76.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DLV RELATED DB: PDB REMARK 900 RELATED ID: 4N46 RELATED DB: PDB REMARK 900 RELATED ID: 4N45 RELATED DB: PDB DBREF 4N46 A 1 392 UNP F0K5D8 F0K5D8_CLOAE 1 392 DBREF 4N46 B 1 392 UNP F0K5D8 F0K5D8_CLOAE 1 392 SEQADV 4N46 SER A 378 UNP F0K5D8 CYS 378 ENGINEERED MUTATION SEQADV 4N46 LEU A 393 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 GLU A 394 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS A 395 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS A 396 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS A 397 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS A 398 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS A 399 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS A 400 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 SER B 378 UNP F0K5D8 CYS 378 ENGINEERED MUTATION SEQADV 4N46 LEU B 393 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 GLU B 394 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS B 395 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS B 396 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS B 397 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS B 398 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS B 399 UNP F0K5D8 EXPRESSION TAG SEQADV 4N46 HIS B 400 UNP F0K5D8 EXPRESSION TAG SEQRES 1 A 400 MET LYS GLU VAL VAL ILE ALA SER ALA VAL ARG THR ALA SEQRES 2 A 400 ILE GLY SER TYR GLY LYS SER LEU LYS ASP VAL PRO ALA SEQRES 3 A 400 VAL ASP LEU GLY ALA THR ALA ILE LYS GLU ALA VAL LYS SEQRES 4 A 400 LYS ALA GLY ILE LYS PRO GLU ASP VAL ASN GLU VAL ILE SEQRES 5 A 400 LEU GLY ASN VAL LEU GLN ALA GLY LEU GLY GLN ASN PRO SEQRES 6 A 400 ALA ARG GLN ALA SER PHE LYS ALA GLY LEU PRO VAL GLU SEQRES 7 A 400 ILE PRO ALA MET THR ILE ASN LYS VAL CYS GLY SER GLY SEQRES 8 A 400 LEU ARG THR VAL SER LEU ALA ALA GLN ILE ILE LYS ALA SEQRES 9 A 400 GLY ASP ALA ASP VAL ILE ILE ALA GLY GLY MET GLU ASN SEQRES 10 A 400 MET SER ARG ALA PRO TYR LEU ALA ASN ASN ALA ARG TRP SEQRES 11 A 400 GLY TYR ARG MET GLY ASN ALA LYS PHE VAL ASP GLU MET SEQRES 12 A 400 ILE THR ASP GLY LEU TRP ASP ALA PHE ASN ASP TYR HIS SEQRES 13 A 400 MET GLY ILE THR ALA GLU ASN ILE ALA GLU ARG TRP ASN SEQRES 14 A 400 ILE SER ARG GLU GLU GLN ASP GLU PHE ALA LEU ALA SER SEQRES 15 A 400 GLN LYS LYS ALA GLU GLU ALA ILE LYS SER GLY GLN PHE SEQRES 16 A 400 LYS ASP GLU ILE VAL PRO VAL VAL ILE LYS GLY ARG LYS SEQRES 17 A 400 GLY GLU THR VAL VAL ASP THR ASP GLU HIS PRO ARG PHE SEQRES 18 A 400 GLY SER THR ILE GLU GLY LEU ALA LYS LEU LYS PRO ALA SEQRES 19 A 400 PHE LYS LYS ASP GLY THR VAL THR ALA GLY ASN ALA SER SEQRES 20 A 400 GLY LEU ASN ASP CYS ALA ALA VAL LEU VAL ILE MET SER SEQRES 21 A 400 ALA GLU LYS ALA LYS GLU LEU GLY VAL LYS PRO LEU ALA SEQRES 22 A 400 LYS ILE VAL SER TYR GLY SER ALA GLY VAL ASP PRO ALA SEQRES 23 A 400 ILE MET GLY TYR GLY PRO PHE TYR ALA THR LYS ALA ALA SEQRES 24 A 400 ILE GLU LYS ALA GLY TRP THR VAL ASP GLU LEU ASP LEU SEQRES 25 A 400 ILE GLU SER ASN GLU ALA PHE ALA ALA GLN SER LEU ALA SEQRES 26 A 400 VAL ALA LYS ASP LEU LYS PHE ASP MET ASN LYS VAL ASN SEQRES 27 A 400 VAL ASN GLY GLY ALA ILE ALA LEU GLY HIS PRO ILE GLY SEQRES 28 A 400 ALA SER GLY ALA ARG ILE LEU VAL THR LEU VAL HIS ALA SEQRES 29 A 400 MET GLN LYS ARG ASP ALA LYS LYS GLY LEU ALA THR LEU SEQRES 30 A 400 SER ILE GLY GLY GLY GLN GLY THR ALA ILE LEU LEU GLU SEQRES 31 A 400 LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 400 MET LYS GLU VAL VAL ILE ALA SER ALA VAL ARG THR ALA SEQRES 2 B 400 ILE GLY SER TYR GLY LYS SER LEU LYS ASP VAL PRO ALA SEQRES 3 B 400 VAL ASP LEU GLY ALA THR ALA ILE LYS GLU ALA VAL LYS SEQRES 4 B 400 LYS ALA GLY ILE LYS PRO GLU ASP VAL ASN GLU VAL ILE SEQRES 5 B 400 LEU GLY ASN VAL LEU GLN ALA GLY LEU GLY GLN ASN PRO SEQRES 6 B 400 ALA ARG GLN ALA SER PHE LYS ALA GLY LEU PRO VAL GLU SEQRES 7 B 400 ILE PRO ALA MET THR ILE ASN LYS VAL CYS GLY SER GLY SEQRES 8 B 400 LEU ARG THR VAL SER LEU ALA ALA GLN ILE ILE LYS ALA SEQRES 9 B 400 GLY ASP ALA ASP VAL ILE ILE ALA GLY GLY MET GLU ASN SEQRES 10 B 400 MET SER ARG ALA PRO TYR LEU ALA ASN ASN ALA ARG TRP SEQRES 11 B 400 GLY TYR ARG MET GLY ASN ALA LYS PHE VAL ASP GLU MET SEQRES 12 B 400 ILE THR ASP GLY LEU TRP ASP ALA PHE ASN ASP TYR HIS SEQRES 13 B 400 MET GLY ILE THR ALA GLU ASN ILE ALA GLU ARG TRP ASN SEQRES 14 B 400 ILE SER ARG GLU GLU GLN ASP GLU PHE ALA LEU ALA SER SEQRES 15 B 400 GLN LYS LYS ALA GLU GLU ALA ILE LYS SER GLY GLN PHE SEQRES 16 B 400 LYS ASP GLU ILE VAL PRO VAL VAL ILE LYS GLY ARG LYS SEQRES 17 B 400 GLY GLU THR VAL VAL ASP THR ASP GLU HIS PRO ARG PHE SEQRES 18 B 400 GLY SER THR ILE GLU GLY LEU ALA LYS LEU LYS PRO ALA SEQRES 19 B 400 PHE LYS LYS ASP GLY THR VAL THR ALA GLY ASN ALA SER SEQRES 20 B 400 GLY LEU ASN ASP CYS ALA ALA VAL LEU VAL ILE MET SER SEQRES 21 B 400 ALA GLU LYS ALA LYS GLU LEU GLY VAL LYS PRO LEU ALA SEQRES 22 B 400 LYS ILE VAL SER TYR GLY SER ALA GLY VAL ASP PRO ALA SEQRES 23 B 400 ILE MET GLY TYR GLY PRO PHE TYR ALA THR LYS ALA ALA SEQRES 24 B 400 ILE GLU LYS ALA GLY TRP THR VAL ASP GLU LEU ASP LEU SEQRES 25 B 400 ILE GLU SER ASN GLU ALA PHE ALA ALA GLN SER LEU ALA SEQRES 26 B 400 VAL ALA LYS ASP LEU LYS PHE ASP MET ASN LYS VAL ASN SEQRES 27 B 400 VAL ASN GLY GLY ALA ILE ALA LEU GLY HIS PRO ILE GLY SEQRES 28 B 400 ALA SER GLY ALA ARG ILE LEU VAL THR LEU VAL HIS ALA SEQRES 29 B 400 MET GLN LYS ARG ASP ALA LYS LYS GLY LEU ALA THR LEU SEQRES 30 B 400 SER ILE GLY GLY GLY GLN GLY THR ALA ILE LEU LEU GLU SEQRES 31 B 400 LYS CYS LEU GLU HIS HIS HIS HIS HIS HIS HET COA A 501 48 HET ACT A 502 4 HET COA B 501 48 HET ACT B 502 4 HETNAM COA COENZYME A HETNAM ACT ACETATE ION FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *678(H2 O) HELIX 1 1 PRO A 25 GLY A 42 1 18 HELIX 2 2 LYS A 44 VAL A 48 5 5 HELIX 3 3 ASN A 64 ALA A 73 1 10 HELIX 4 4 LYS A 86 CYS A 88 5 3 HELIX 5 5 GLY A 89 ALA A 104 1 16 HELIX 6 6 SER A 119 ALA A 121 5 3 HELIX 7 7 GLU A 142 LEU A 148 1 7 HELIX 8 8 MET A 157 ASN A 169 1 13 HELIX 9 9 SER A 171 SER A 192 1 22 HELIX 10 10 THR A 224 LYS A 230 1 7 HELIX 11 11 ALA A 261 GLY A 268 1 8 HELIX 12 12 ASP A 284 GLY A 289 5 6 HELIX 13 13 TYR A 290 ALA A 303 1 14 HELIX 14 14 PHE A 319 LYS A 331 1 13 HELIX 15 15 ASP A 333 VAL A 337 5 5 HELIX 16 16 GLY A 342 GLY A 347 1 6 HELIX 17 17 PRO A 349 ASP A 369 1 21 HELIX 18 18 PRO B 25 GLY B 42 1 18 HELIX 19 19 LYS B 44 VAL B 48 5 5 HELIX 20 20 ASN B 64 ALA B 73 1 10 HELIX 21 21 LYS B 86 CYS B 88 5 3 HELIX 22 22 GLY B 89 ALA B 104 1 16 HELIX 23 23 GLU B 142 LEU B 148 1 7 HELIX 24 24 MET B 157 ASN B 169 1 13 HELIX 25 25 SER B 171 SER B 192 1 22 HELIX 26 26 THR B 224 LYS B 230 1 7 HELIX 27 27 ALA B 261 LEU B 267 1 7 HELIX 28 28 ILE B 287 GLY B 289 5 3 HELIX 29 29 TYR B 290 ALA B 303 1 14 HELIX 30 30 THR B 306 LEU B 310 5 5 HELIX 31 31 PHE B 319 LYS B 331 1 13 HELIX 32 32 ASP B 333 VAL B 337 5 5 HELIX 33 33 GLY B 342 GLY B 347 1 6 HELIX 34 34 PRO B 349 ASP B 369 1 21 SHEET 1 A 2 VAL A 4 THR A 12 0 SHEET 2 A 2 ILE A 199 VAL A 200 1 O VAL A 200 N ARG A 11 SHEET 1 B11 VAL A 4 THR A 12 0 SHEET 2 B11 ASN A 250 SER A 260 -1 O VAL A 255 N VAL A 10 SHEET 3 B11 VAL A 109 ASN A 117 -1 N ILE A 110 O ILE A 258 SHEET 4 B11 GLU A 50 GLY A 54 1 N GLY A 54 O GLY A 113 SHEET 5 B11 ALA A 81 ASN A 85 1 O ILE A 84 N LEU A 53 SHEET 6 B11 ALA B 81 ASN B 85 -1 O ASN B 85 N THR A 83 SHEET 7 B11 GLU B 50 GLY B 54 1 N LEU B 53 O ILE B 84 SHEET 8 B11 VAL B 109 ASN B 117 1 O ILE B 111 N ILE B 52 SHEET 9 B11 ASN B 250 SER B 260 -1 O ILE B 258 N ILE B 110 SHEET 10 B11 VAL B 4 THR B 12 -1 N ALA B 7 O VAL B 257 SHEET 11 B11 ILE B 199 VAL B 200 1 O VAL B 200 N ARG B 11 SHEET 1 C 5 VAL A 4 THR A 12 0 SHEET 2 C 5 ALA A 273 TYR A 278 -1 O ILE A 275 N VAL A 4 SHEET 3 C 5 THR A 385 LYS A 391 -1 O GLU A 390 N LYS A 274 SHEET 4 C 5 LYS A 372 LEU A 377 -1 N ALA A 375 O ILE A 387 SHEET 5 C 5 LEU A 312 SER A 315 1 N GLU A 314 O LEU A 374 SHEET 1 D 5 VAL B 4 THR B 12 0 SHEET 2 D 5 ALA B 273 TYR B 278 -1 O ILE B 275 N VAL B 4 SHEET 3 D 5 THR B 385 LYS B 391 -1 O LEU B 388 N SER B 277 SHEET 4 D 5 LYS B 372 LEU B 377 -1 N GLY B 373 O LEU B 389 SHEET 5 D 5 LEU B 312 SER B 315 1 N GLU B 314 O LEU B 374 SHEET 1 E 2 GLY A 15 SER A 16 0 SHEET 2 E 2 ASN A 250 SER A 260 -1 O ASP A 251 N GLY A 15 SHEET 1 F 2 GLY B 15 SER B 16 0 SHEET 2 F 2 ASN B 250 SER B 260 -1 O ASP B 251 N GLY B 15 SHEET 1 G 4 VAL A 140 ASP A 141 0 SHEET 2 G 4 TYR A 123 ALA A 125 -1 N LEU A 124 O VAL A 140 SHEET 3 G 4 TYR B 123 ALA B 125 -1 O TYR B 123 N ALA A 125 SHEET 4 G 4 VAL B 140 ASP B 141 -1 O VAL B 140 N LEU B 124 SHEET 1 H 2 TRP A 149 ASP A 150 0 SHEET 2 H 2 TYR A 155 HIS A 156 -1 O TYR A 155 N ASP A 150 SHEET 1 I 2 VAL A 202 LYS A 205 0 SHEET 2 I 2 GLU A 210 VAL A 213 -1 O THR A 211 N ILE A 204 SHEET 1 J 2 TRP B 149 ASP B 150 0 SHEET 2 J 2 TYR B 155 HIS B 156 -1 O TYR B 155 N ASP B 150 SHEET 1 K 2 VAL B 202 LYS B 205 0 SHEET 2 K 2 GLU B 210 VAL B 213 -1 O THR B 211 N ILE B 204 CISPEP 1 GLY B 279 SER B 280 0 10.43 SITE 1 AC1 24 LEU A 148 HIS A 156 ARG A 220 SER A 223 SITE 2 AC1 24 LEU A 228 LEU A 231 SER A 247 ALA A 318 SITE 3 AC1 24 PHE A 319 HIS A 348 HOH A 601 HOH A 625 SITE 4 AC1 24 HOH A 657 HOH A 675 HOH A 704 HOH A 708 SITE 5 AC1 24 HOH A 709 HOH A 721 HOH A 743 HOH A 761 SITE 6 AC1 24 HOH A 783 HOH A 882 HOH A 932 ARG B 133 SITE 1 AC2 7 LEU A 92 SER A 96 GLY A 279 SER A 280 SITE 2 AC2 7 THR A 385 ALA A 386 ILE A 387 SITE 1 AC3 26 ARG A 133 LEU B 148 HIS B 156 ARG B 220 SITE 2 AC3 26 SER B 223 LEU B 228 LEU B 231 ALA B 243 SITE 3 AC3 26 SER B 247 GLY B 248 ALA B 318 PHE B 319 SITE 4 AC3 26 HOH B 631 HOH B 639 HOH B 641 HOH B 657 SITE 5 AC3 26 HOH B 670 HOH B 677 HOH B 698 HOH B 713 SITE 6 AC3 26 HOH B 730 HOH B 739 HOH B 788 HOH B 798 SITE 7 AC3 26 HOH B 822 HOH B 860 SITE 1 AC4 7 LEU B 92 SER B 96 GLY B 279 SER B 280 SITE 2 AC4 7 THR B 385 ALA B 386 HOH B 629 CRYST1 203.283 54.322 73.134 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013674 0.00000