HEADER LYASE 08-OCT-13 4N4P TITLE CRYSTAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE FROM MYCOPLASMA TITLE 2 SYNOVIAE, CRYSTAL FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYLNEURAMINATE LYASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.1.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA SYNOVIAE; SOURCE 3 ORGANISM_TAXID: 262723; SOURCE 4 STRAIN: 53; SOURCE 5 GENE: MS53_0198, NANA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22A KEYWDS TIM BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.GEORGESCAULD,K.POPOVA,A.J.GUPTA,A.BRACHER,J.R.ENGEN,M.HAYER-HARTL, AUTHOR 2 F.U.HARTL REVDAT 3 20-SEP-23 4N4P 1 REMARK REVDAT 2 25-JUN-14 4N4P 1 JRNL REVDAT 1 21-MAY-14 4N4P 0 JRNL AUTH F.GEORGESCAULD,K.POPOVA,A.J.GUPTA,A.BRACHER,J.R.ENGEN, JRNL AUTH 2 M.HAYER-HARTL,F.U.HARTL JRNL TITL GROEL/ES CHAPERONIN MODULATES THE MECHANISM AND ACCELERATES JRNL TITL 2 THE RATE OF TIM-BARREL DOMAIN FOLDING. JRNL REF CELL(CAMBRIDGE,MASS.) V. 157 922 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 24813614 JRNL DOI 10.1016/J.CELL.2014.03.038 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 112370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7239 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 407 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 1098 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9479 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12765 ; 1.301 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1151 ; 5.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 410 ;34.462 ;24.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1746 ;13.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.192 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1394 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6992 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5739 ; 0.772 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9194 ; 1.451 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3740 ; 2.501 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3571 ; 4.220 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1F5Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES, PH 6.0, 4 % MPD, 0.2 M REMARK 280 NACL, 35 % PEG 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.99300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.62400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.62400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.99300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -171.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 143 REMARK 465 LEU A 144 REMARK 465 ALA A 145 REMARK 465 GLY A 146 REMARK 465 GLN A 147 REMARK 465 LYS A 148 REMARK 465 GLN B 143 REMARK 465 LEU B 144 REMARK 465 ALA B 145 REMARK 465 GLY B 146 REMARK 465 GLN B 147 REMARK 465 LYS B 148 REMARK 465 MET C 1 REMARK 465 HIS C 2 REMARK 465 LEU C 144 REMARK 465 ALA C 145 REMARK 465 GLY C 146 REMARK 465 GLN C 147 REMARK 465 LYS C 148 REMARK 465 MET D 1 REMARK 465 HIS D 2 REMARK 465 GLN D 143 REMARK 465 LEU D 144 REMARK 465 ALA D 145 REMARK 465 GLY D 146 REMARK 465 GLN D 147 REMARK 465 LYS D 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 MET B 1 CG SD CE REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 LYS C 296 CG CD CE NZ REMARK 470 ASN D 3 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS C 258 O HOH C 433 1.66 REMARK 500 OE1 GLU B 71 O HOH B 627 2.03 REMARK 500 NZ LYS B 231 O HOH B 574 2.07 REMARK 500 NZ LYS C 258 O HOH C 433 2.11 REMARK 500 O HOH B 628 O HOH B 650 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C 198 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 85 -175.98 -174.41 REMARK 500 TYR A 113 -66.72 69.46 REMARK 500 ASN A 162 -7.61 77.45 REMARK 500 TYR B 113 -66.52 69.61 REMARK 500 ASN B 162 -10.29 74.98 REMARK 500 TYR C 113 -66.78 73.08 REMARK 500 ASN C 162 -5.80 71.69 REMARK 500 ASN C 215 43.75 -140.07 REMARK 500 TYR D 113 -64.26 70.64 REMARK 500 ASN D 162 -13.47 79.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N4Q RELATED DB: PDB DBREF 4N4P A 1 296 UNP Q4A6K4 Q4A6K4_MYCS5 1 296 DBREF 4N4P B 1 296 UNP Q4A6K4 Q4A6K4_MYCS5 1 296 DBREF 4N4P C 1 296 UNP Q4A6K4 Q4A6K4_MYCS5 1 296 DBREF 4N4P D 1 296 UNP Q4A6K4 Q4A6K4_MYCS5 1 296 SEQRES 1 A 296 MET HIS ASN PHE ASP LYS PHE LYS GLY LEU PHE PRO ALA SEQRES 2 A 296 MET VAL THR PRO PHE THR LYS ASP GLY LYS LEU HIS LYS SEQRES 3 A 296 ALA GLY VAL LYS GLU VAL VAL ASN PHE LEU VAL GLU LYS SEQRES 4 A 296 GLN LYS VAL ASP GLY ILE TYR ILE THR GLY SER THR GLY SEQRES 5 A 296 GLU PHE LEU LEU LEU SER PHE GLU ASP LYS LYS GLU VAL SEQRES 6 A 296 MET LYS LEU VAL ALA GLU ALA ASN ALA GLY ARG VAL THR SEQRES 7 A 296 LEU ILE ALA GLN ILE GLY SER LEU ASN ILE GLU GLU THR SEQRES 8 A 296 LYS GLU LEU ALA LYS LEU ALA LYS GLU LEU LYS TYR ASP SEQRES 9 A 296 ALA ILE SER ALA ILE THR PRO TYR TYR TYR ASN PHE SER SEQRES 10 A 296 PHE ASN GLU THR HIS HIS TYR TYR GLU GLU ILE SER LYS SEQRES 11 A 296 ALA ALA ASP ILE PRO MET LEU ILE TYR TYR LEU PRO GLN SEQRES 12 A 296 LEU ALA GLY GLN LYS VAL SER THR ASP GLN PHE GLY LYS SEQRES 13 A 296 LEU LEU GLU ILE LYS ASN VAL ILE GLY SER LYS TYR GLY SEQRES 14 A 296 ALA THR ASP LEU PHE ALA PHE GLU ARG LEU MET SER LYS SEQRES 15 A 296 TYR PRO ASP LYS LEU PHE MET PHE ALA TRP ASP GLU ALA SEQRES 16 A 296 LEU ALA MET GLY LEU THR MET GLY ALA LYS GLY PHE ILE SEQRES 17 A 296 GLY SER THR TYR ASN VAL ASN ALA LYS GLY ALA ASN ALA SEQRES 18 A 296 ILE ILE LYS ALA TRP GLU ALA ASN ASP LYS GLU ALA VAL SEQRES 19 A 296 MET LYS LEU THR HIS THR TYR ASN ASP TYR VAL LEU ASP SEQRES 20 A 296 LEU ILE SER LYS GLY LEU MET GLN SER LEU LYS ALA ILE SEQRES 21 A 296 MET ARG LEU HIS GLY VAL ASP ALA GLY TYR THR ARG LYS SEQRES 22 A 296 PRO PHE TRP ARG TYR GLU ASP GLU GLU ILE LYS LYS HIS SEQRES 23 A 296 ALA GLU PHE ILE THR ASP LYS TYR LEU LYS SEQRES 1 B 296 MET HIS ASN PHE ASP LYS PHE LYS GLY LEU PHE PRO ALA SEQRES 2 B 296 MET VAL THR PRO PHE THR LYS ASP GLY LYS LEU HIS LYS SEQRES 3 B 296 ALA GLY VAL LYS GLU VAL VAL ASN PHE LEU VAL GLU LYS SEQRES 4 B 296 GLN LYS VAL ASP GLY ILE TYR ILE THR GLY SER THR GLY SEQRES 5 B 296 GLU PHE LEU LEU LEU SER PHE GLU ASP LYS LYS GLU VAL SEQRES 6 B 296 MET LYS LEU VAL ALA GLU ALA ASN ALA GLY ARG VAL THR SEQRES 7 B 296 LEU ILE ALA GLN ILE GLY SER LEU ASN ILE GLU GLU THR SEQRES 8 B 296 LYS GLU LEU ALA LYS LEU ALA LYS GLU LEU LYS TYR ASP SEQRES 9 B 296 ALA ILE SER ALA ILE THR PRO TYR TYR TYR ASN PHE SER SEQRES 10 B 296 PHE ASN GLU THR HIS HIS TYR TYR GLU GLU ILE SER LYS SEQRES 11 B 296 ALA ALA ASP ILE PRO MET LEU ILE TYR TYR LEU PRO GLN SEQRES 12 B 296 LEU ALA GLY GLN LYS VAL SER THR ASP GLN PHE GLY LYS SEQRES 13 B 296 LEU LEU GLU ILE LYS ASN VAL ILE GLY SER LYS TYR GLY SEQRES 14 B 296 ALA THR ASP LEU PHE ALA PHE GLU ARG LEU MET SER LYS SEQRES 15 B 296 TYR PRO ASP LYS LEU PHE MET PHE ALA TRP ASP GLU ALA SEQRES 16 B 296 LEU ALA MET GLY LEU THR MET GLY ALA LYS GLY PHE ILE SEQRES 17 B 296 GLY SER THR TYR ASN VAL ASN ALA LYS GLY ALA ASN ALA SEQRES 18 B 296 ILE ILE LYS ALA TRP GLU ALA ASN ASP LYS GLU ALA VAL SEQRES 19 B 296 MET LYS LEU THR HIS THR TYR ASN ASP TYR VAL LEU ASP SEQRES 20 B 296 LEU ILE SER LYS GLY LEU MET GLN SER LEU LYS ALA ILE SEQRES 21 B 296 MET ARG LEU HIS GLY VAL ASP ALA GLY TYR THR ARG LYS SEQRES 22 B 296 PRO PHE TRP ARG TYR GLU ASP GLU GLU ILE LYS LYS HIS SEQRES 23 B 296 ALA GLU PHE ILE THR ASP LYS TYR LEU LYS SEQRES 1 C 296 MET HIS ASN PHE ASP LYS PHE LYS GLY LEU PHE PRO ALA SEQRES 2 C 296 MET VAL THR PRO PHE THR LYS ASP GLY LYS LEU HIS LYS SEQRES 3 C 296 ALA GLY VAL LYS GLU VAL VAL ASN PHE LEU VAL GLU LYS SEQRES 4 C 296 GLN LYS VAL ASP GLY ILE TYR ILE THR GLY SER THR GLY SEQRES 5 C 296 GLU PHE LEU LEU LEU SER PHE GLU ASP LYS LYS GLU VAL SEQRES 6 C 296 MET LYS LEU VAL ALA GLU ALA ASN ALA GLY ARG VAL THR SEQRES 7 C 296 LEU ILE ALA GLN ILE GLY SER LEU ASN ILE GLU GLU THR SEQRES 8 C 296 LYS GLU LEU ALA LYS LEU ALA LYS GLU LEU LYS TYR ASP SEQRES 9 C 296 ALA ILE SER ALA ILE THR PRO TYR TYR TYR ASN PHE SER SEQRES 10 C 296 PHE ASN GLU THR HIS HIS TYR TYR GLU GLU ILE SER LYS SEQRES 11 C 296 ALA ALA ASP ILE PRO MET LEU ILE TYR TYR LEU PRO GLN SEQRES 12 C 296 LEU ALA GLY GLN LYS VAL SER THR ASP GLN PHE GLY LYS SEQRES 13 C 296 LEU LEU GLU ILE LYS ASN VAL ILE GLY SER LYS TYR GLY SEQRES 14 C 296 ALA THR ASP LEU PHE ALA PHE GLU ARG LEU MET SER LYS SEQRES 15 C 296 TYR PRO ASP LYS LEU PHE MET PHE ALA TRP ASP GLU ALA SEQRES 16 C 296 LEU ALA MET GLY LEU THR MET GLY ALA LYS GLY PHE ILE SEQRES 17 C 296 GLY SER THR TYR ASN VAL ASN ALA LYS GLY ALA ASN ALA SEQRES 18 C 296 ILE ILE LYS ALA TRP GLU ALA ASN ASP LYS GLU ALA VAL SEQRES 19 C 296 MET LYS LEU THR HIS THR TYR ASN ASP TYR VAL LEU ASP SEQRES 20 C 296 LEU ILE SER LYS GLY LEU MET GLN SER LEU LYS ALA ILE SEQRES 21 C 296 MET ARG LEU HIS GLY VAL ASP ALA GLY TYR THR ARG LYS SEQRES 22 C 296 PRO PHE TRP ARG TYR GLU ASP GLU GLU ILE LYS LYS HIS SEQRES 23 C 296 ALA GLU PHE ILE THR ASP LYS TYR LEU LYS SEQRES 1 D 296 MET HIS ASN PHE ASP LYS PHE LYS GLY LEU PHE PRO ALA SEQRES 2 D 296 MET VAL THR PRO PHE THR LYS ASP GLY LYS LEU HIS LYS SEQRES 3 D 296 ALA GLY VAL LYS GLU VAL VAL ASN PHE LEU VAL GLU LYS SEQRES 4 D 296 GLN LYS VAL ASP GLY ILE TYR ILE THR GLY SER THR GLY SEQRES 5 D 296 GLU PHE LEU LEU LEU SER PHE GLU ASP LYS LYS GLU VAL SEQRES 6 D 296 MET LYS LEU VAL ALA GLU ALA ASN ALA GLY ARG VAL THR SEQRES 7 D 296 LEU ILE ALA GLN ILE GLY SER LEU ASN ILE GLU GLU THR SEQRES 8 D 296 LYS GLU LEU ALA LYS LEU ALA LYS GLU LEU LYS TYR ASP SEQRES 9 D 296 ALA ILE SER ALA ILE THR PRO TYR TYR TYR ASN PHE SER SEQRES 10 D 296 PHE ASN GLU THR HIS HIS TYR TYR GLU GLU ILE SER LYS SEQRES 11 D 296 ALA ALA ASP ILE PRO MET LEU ILE TYR TYR LEU PRO GLN SEQRES 12 D 296 LEU ALA GLY GLN LYS VAL SER THR ASP GLN PHE GLY LYS SEQRES 13 D 296 LEU LEU GLU ILE LYS ASN VAL ILE GLY SER LYS TYR GLY SEQRES 14 D 296 ALA THR ASP LEU PHE ALA PHE GLU ARG LEU MET SER LYS SEQRES 15 D 296 TYR PRO ASP LYS LEU PHE MET PHE ALA TRP ASP GLU ALA SEQRES 16 D 296 LEU ALA MET GLY LEU THR MET GLY ALA LYS GLY PHE ILE SEQRES 17 D 296 GLY SER THR TYR ASN VAL ASN ALA LYS GLY ALA ASN ALA SEQRES 18 D 296 ILE ILE LYS ALA TRP GLU ALA ASN ASP LYS GLU ALA VAL SEQRES 19 D 296 MET LYS LEU THR HIS THR TYR ASN ASP TYR VAL LEU ASP SEQRES 20 D 296 LEU ILE SER LYS GLY LEU MET GLN SER LEU LYS ALA ILE SEQRES 21 D 296 MET ARG LEU HIS GLY VAL ASP ALA GLY TYR THR ARG LYS SEQRES 22 D 296 PRO PHE TRP ARG TYR GLU ASP GLU GLU ILE LYS LYS HIS SEQRES 23 D 296 ALA GLU PHE ILE THR ASP LYS TYR LEU LYS HET CL A 300 1 HET CL A 301 1 HET CL B 300 1 HET CL B 301 1 HET CL C 300 1 HET CL C 301 1 HET CL D 300 1 HET CL D 301 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 8(CL 1-) FORMUL 13 HOH *1098(H2 O) HELIX 1 1 PHE A 4 LYS A 8 5 5 HELIX 2 2 HIS A 25 LYS A 39 1 15 HELIX 3 3 GLY A 49 LEU A 57 5 9 HELIX 4 4 SER A 58 ALA A 74 1 17 HELIX 5 5 ASN A 87 LEU A 101 1 15 HELIX 6 6 SER A 117 ALA A 132 1 16 HELIX 7 7 SER A 150 GLU A 159 1 10 HELIX 8 8 ASP A 172 TYR A 183 1 12 HELIX 9 9 TRP A 192 GLU A 194 5 3 HELIX 10 10 ALA A 195 MET A 202 1 8 HELIX 11 11 THR A 211 ALA A 228 1 18 HELIX 12 12 ASP A 230 ILE A 249 1 20 HELIX 13 13 GLY A 252 HIS A 264 1 13 HELIX 14 14 GLU A 279 LEU A 295 1 17 HELIX 15 15 PHE B 4 LYS B 8 5 5 HELIX 16 16 HIS B 25 LYS B 39 1 15 HELIX 17 17 GLY B 49 LEU B 57 5 9 HELIX 18 18 SER B 58 ALA B 74 1 17 HELIX 19 19 ASN B 87 LEU B 101 1 15 HELIX 20 20 SER B 117 LYS B 130 1 14 HELIX 21 21 SER B 150 GLU B 159 1 10 HELIX 22 22 ASP B 172 TYR B 183 1 12 HELIX 23 23 TRP B 192 GLU B 194 5 3 HELIX 24 24 ALA B 195 MET B 202 1 8 HELIX 25 25 THR B 211 ALA B 228 1 18 HELIX 26 26 ASP B 230 ILE B 249 1 20 HELIX 27 27 GLY B 252 HIS B 264 1 13 HELIX 28 28 GLU B 279 LEU B 295 1 17 HELIX 29 29 PHE C 4 LYS C 8 5 5 HELIX 30 30 HIS C 25 LYS C 39 1 15 HELIX 31 31 GLY C 49 LEU C 57 5 9 HELIX 32 32 SER C 58 ALA C 74 1 17 HELIX 33 33 ASN C 87 LEU C 101 1 15 HELIX 34 34 SER C 117 LYS C 130 1 14 HELIX 35 35 SER C 150 GLU C 159 1 10 HELIX 36 36 ASP C 172 TYR C 183 1 12 HELIX 37 37 TRP C 192 GLU C 194 5 3 HELIX 38 38 ALA C 195 MET C 202 1 8 HELIX 39 39 THR C 211 ALA C 228 1 18 HELIX 40 40 ASP C 230 ILE C 249 1 20 HELIX 41 41 GLY C 252 HIS C 264 1 13 HELIX 42 42 GLU C 279 LEU C 295 1 17 HELIX 43 43 PHE D 4 LYS D 8 5 5 HELIX 44 44 HIS D 25 LYS D 39 1 15 HELIX 45 45 GLY D 49 LEU D 57 5 9 HELIX 46 46 SER D 58 ALA D 74 1 17 HELIX 47 47 ASN D 87 LEU D 101 1 15 HELIX 48 48 SER D 117 LYS D 130 1 14 HELIX 49 49 SER D 150 GLU D 159 1 10 HELIX 50 50 ASP D 172 TYR D 183 1 12 HELIX 51 51 TRP D 192 GLU D 194 5 3 HELIX 52 52 ALA D 195 MET D 202 1 8 HELIX 53 53 THR D 211 ALA D 228 1 18 HELIX 54 54 ASP D 230 ILE D 249 1 20 HELIX 55 55 GLY D 252 HIS D 264 1 13 HELIX 56 56 GLU D 279 LEU D 295 1 17 SHEET 1 A 8 GLY A 9 PRO A 12 0 SHEET 2 A 8 GLY A 206 GLY A 209 1 O PHE A 207 N PHE A 11 SHEET 3 A 8 LEU A 187 PHE A 190 1 N PHE A 190 O GLY A 206 SHEET 4 A 8 VAL A 163 TYR A 168 1 N ILE A 164 O LEU A 187 SHEET 5 A 8 MET A 136 TYR A 139 1 N ILE A 138 O LYS A 167 SHEET 6 A 8 ALA A 105 ALA A 108 1 N ILE A 106 O LEU A 137 SHEET 7 A 8 THR A 78 GLN A 82 1 N ALA A 81 O SER A 107 SHEET 8 A 8 GLY A 44 ILE A 47 1 N ILE A 47 O ILE A 80 SHEET 1 B 2 GLY B 9 PRO B 12 0 SHEET 2 B 2 GLY B 206 GLY B 209 1 O PHE B 207 N PHE B 11 SHEET 1 C 6 GLY B 44 ILE B 47 0 SHEET 2 C 6 THR B 78 GLN B 82 1 O GLN B 82 N ILE B 47 SHEET 3 C 6 ALA B 105 ALA B 108 1 O SER B 107 N ALA B 81 SHEET 4 C 6 MET B 136 TYR B 139 1 O LEU B 137 N ILE B 106 SHEET 5 C 6 VAL B 163 TYR B 168 1 O LYS B 167 N ILE B 138 SHEET 6 C 6 LEU B 187 PHE B 190 1 O MET B 189 N TYR B 168 SHEET 1 D 8 GLY C 9 PRO C 12 0 SHEET 2 D 8 GLY C 206 GLY C 209 1 O PHE C 207 N PHE C 11 SHEET 3 D 8 LEU C 187 PHE C 190 1 N PHE C 190 O GLY C 206 SHEET 4 D 8 VAL C 163 TYR C 168 1 N TYR C 168 O MET C 189 SHEET 5 D 8 MET C 136 TYR C 139 1 N ILE C 138 O LYS C 167 SHEET 6 D 8 ALA C 105 ALA C 108 1 N ILE C 106 O LEU C 137 SHEET 7 D 8 THR C 78 GLN C 82 1 N ALA C 81 O SER C 107 SHEET 8 D 8 GLY C 44 ILE C 47 1 N ILE C 47 O GLN C 82 SHEET 1 E 8 GLY D 9 PRO D 12 0 SHEET 2 E 8 GLY D 206 GLY D 209 1 O PHE D 207 N PHE D 11 SHEET 3 E 8 LEU D 187 PHE D 190 1 N PHE D 190 O GLY D 206 SHEET 4 E 8 VAL D 163 TYR D 168 1 N TYR D 168 O MET D 189 SHEET 5 E 8 MET D 136 TYR D 139 1 N ILE D 138 O LYS D 167 SHEET 6 E 8 ALA D 105 ALA D 108 1 N ILE D 106 O LEU D 137 SHEET 7 E 8 THR D 78 GLN D 82 1 N ALA D 81 O SER D 107 SHEET 8 E 8 GLY D 44 ILE D 47 1 N ILE D 47 O GLN D 82 CISPEP 1 LYS A 273 PRO A 274 0 7.30 CISPEP 2 LYS B 273 PRO B 274 0 5.22 CISPEP 3 LYS C 273 PRO C 274 0 7.87 CISPEP 4 LYS D 273 PRO D 274 0 7.09 SITE 1 AC1 4 ALA A 13 SER A 50 THR A 51 HOH A 469 SITE 1 AC2 3 TYR A 278 HOH A 424 HOH A 518 SITE 1 AC3 4 ALA B 13 SER B 50 THR B 51 HOH B 488 SITE 1 AC4 3 TYR B 278 HOH B 424 HOH B 548 SITE 1 AC5 3 TYR C 278 HOH C 448 HOH C 506 SITE 1 AC6 3 ALA C 13 SER C 50 THR C 51 SITE 1 AC7 3 ALA D 13 SER D 50 THR D 51 SITE 1 AC8 3 TYR D 278 HOH D 437 HOH D 482 CRYST1 59.986 136.350 157.248 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007334 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006359 0.00000