HEADER MEMBRANE PROTEIN, TRANSPORT PROTEIN 08-OCT-13 4N4W TITLE STRUCTURE OF THE HUMAN SMOOTHENED RECEPTOR IN COMPLEX WITH SANT-1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B(562),SMOOTHENED HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 190-555; COMPND 5 SYNONYM: SMO,PROTEIN GX; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 5 STR. 8401, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 373384, 9606; SOURCE 5 STRAIN: 8401; SOURCE 6 GENE: CYBC, SFV_4255, SMO, SMOH; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS HUMAN SMOOTHENED RECEPTOR, ANTITUMOR AGENT, NOVEL PROTEIN KEYWDS 2 ENGINEERING, GPCR NETWORK, MEMBRANE PROTEIN, PSI-BIOLOGY, STRUCTURAL KEYWDS 3 GENOMICS, GPCR, MEMBRANE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.WANG,H.WU,G.W.HAN,V.CHEREZOV,R.C.STEVENS,GPCR NETWORK (GPCR) REVDAT 6 20-SEP-23 4N4W 1 HETSYN REVDAT 5 29-JUL-20 4N4W 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 15-NOV-17 4N4W 1 REMARK REVDAT 3 07-JUN-17 4N4W 1 COMPND SOURCE REMARK REVDAT 2 30-JUL-14 4N4W 1 JRNL REVDAT 1 22-JAN-14 4N4W 0 JRNL AUTH C.WANG,H.WU,T.EVRON,E.VARDY,G.W.HAN,X.P.HUANG,S.J.HUFEISEN, JRNL AUTH 2 T.J.MANGANO,D.J.URBAN,V.KATRITCH,V.CHEREZOV,M.G.CARON, JRNL AUTH 3 B.L.ROTH,R.C.STEVENS JRNL TITL STRUCTURAL BASIS FOR SMOOTHENED RECEPTOR MODULATION AND JRNL TITL 2 CHEMORESISTANCE TO ANTICANCER DRUGS. JRNL REF NAT COMMUN V. 5 4355 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25008467 JRNL DOI 10.1038/NCOMMS5355 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 15986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.05 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2598 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2243 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2454 REMARK 3 BIN R VALUE (WORKING SET) : 0.2191 REMARK 3 BIN FREE R VALUE : 0.3188 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.54 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3551 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.51200 REMARK 3 B22 (A**2) : -6.44010 REMARK 3 B33 (A**2) : 12.95210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.415 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.046 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3794 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5157 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1697 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 75 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 547 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3794 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 498 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4652 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.45 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|-2 - 106 } REMARK 3 ORIGIN FOR THE GROUP (A): -12.2216 -50.7429 -37.6558 REMARK 3 T TENSOR REMARK 3 T11: -0.0383 T22: -0.0304 REMARK 3 T33: -0.2776 T12: 0.0029 REMARK 3 T13: -0.0950 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 4.9400 L22: 8.2003 REMARK 3 L33: 4.0118 L12: 2.4672 REMARK 3 L13: -0.1201 L23: -2.1120 REMARK 3 S TENSOR REMARK 3 S11: 0.1303 S12: 0.1285 S13: -0.2445 REMARK 3 S21: -0.2352 S22: -0.0555 S23: -0.0348 REMARK 3 S31: 0.3380 S32: -0.2673 S33: -0.0748 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|190 - 553 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.7527 -23.2528 -4.8813 REMARK 3 T TENSOR REMARK 3 T11: -0.1588 T22: 0.0844 REMARK 3 T33: -0.3040 T12: 0.0104 REMARK 3 T13: 0.0582 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 1.0947 L22: 0.7157 REMARK 3 L33: 6.1582 L12: 0.1422 REMARK 3 L13: 0.1294 L23: 0.8769 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: 0.0717 S13: 0.0287 REMARK 3 S21: -0.1474 S22: 0.0442 S23: 0.0748 REMARK 3 S31: -0.3511 S32: 0.3977 S33: 0.0320 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|601 - 604 } REMARK 3 ORIGIN FOR THE GROUP (A): -30.4090 -20.6131 -44.7856 REMARK 3 T TENSOR REMARK 3 T11: -0.0247 T22: 0.0413 REMARK 3 T33: -0.0171 T12: -0.0443 REMARK 3 T13: 0.0609 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: -0.1413 REMARK 3 L13: -0.1556 L23: -0.7341 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.0037 S13: 0.0020 REMARK 3 S21: 0.0092 S22: -0.0208 S23: 0.0043 REMARK 3 S31: 0.0002 S32: 0.0017 S33: 0.0247 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0330 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4JKV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH4F 150MM, HEPES PH 6.9 100MM, PEG REMARK 280 400 27%, JEFFAMINE 2.5%, LIPIDIC CUBIC PHASE (LCP), TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.32000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.44000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.32000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.44000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.60500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.32000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.44000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.60500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.32000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.44000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -72.60500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 440 REMARK 465 ALA A 441 REMARK 465 ALA A 442 REMARK 465 ASN A 493 REMARK 465 VAL A 494 REMARK 465 THR A 495 REMARK 465 ILE A 496 REMARK 465 GLY A 497 REMARK 465 LEU A 498 REMARK 465 PRO A 499 REMARK 465 THR A 500 REMARK 465 LYS A 501 REMARK 465 GLN A 502 REMARK 465 PRO A 503 REMARK 465 ILE A 504 REMARK 465 PRO A 505 REMARK 465 GLY A 554 REMARK 465 GLN A 555 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 LYS A 430 CG CD CE NZ REMARK 470 GLU A 439 CG CD OE1 OE2 REMARK 470 ASN A 446 CG OD1 ND2 REMARK 470 LYS A 539 CD CE NZ REMARK 470 ARG A 546 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 547 CG CD NE CZ NH1 NH2 REMARK 470 THR A 548 OG1 CG2 REMARK 470 CYS A 550 SG REMARK 470 LEU A 552 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 208 -127.25 46.89 REMARK 500 GLN A 216 150.52 -47.93 REMARK 500 ASN A 219 106.13 -44.04 REMARK 500 ASP A 255 38.45 -142.44 REMARK 500 ASP A 287 111.38 -30.53 REMARK 500 ASN A 309 -31.47 66.91 REMARK 500 VAL A 404 -62.05 -127.83 REMARK 500 LEU A 437 59.25 -91.65 REMARK 500 LYS A 444 -71.38 64.29 REMARK 500 GLN A 491 69.63 -69.62 REMARK 500 CYS A 507 96.30 -164.20 REMARK 500 LYS A 510 -70.23 -65.40 REMARK 500 THR A 534 10.47 -69.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 610 OLC A 608 REMARK 610 OLC A 609 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 ASP A 66 OD1 134.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 607 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 433 NE2 REMARK 620 2 HOH A 706 O 104.9 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JKV RELATED DB: PDB REMARK 900 RELATED ID: GPCR-131 RELATED DB: TARGETTRACK DBREF 4N4W A 1 106 UNP Q0SXH8 Q0SXH8_SHIF8 23 128 DBREF 4N4W A 190 555 UNP Q99835 SMO_HUMAN 190 555 SEQADV 4N4W GLY A -2 UNP Q0SXH8 EXPRESSION TAG SEQADV 4N4W GLY A -1 UNP Q0SXH8 EXPRESSION TAG SEQADV 4N4W THR A 0 UNP Q0SXH8 EXPRESSION TAG SEQADV 4N4W TRP A 7 UNP Q0SXH8 MET 29 ENGINEERED MUTATION SEQADV 4N4W ILE A 102 UNP Q0SXH8 HIS 124 ENGINEERED MUTATION SEQADV 4N4W LEU A 106 UNP Q0SXH8 ARG 128 ENGINEERED MUTATION SEQRES 1 A 475 GLY GLY THR ALA ASP LEU GLU ASP ASN TRP GLU THR LEU SEQRES 2 A 475 ASN ASP ASN LEU LYS VAL ILE GLU LYS ALA ASP ASN ALA SEQRES 3 A 475 ALA GLN VAL LYS ASP ALA LEU THR LYS MET ARG ALA ALA SEQRES 4 A 475 ALA LEU ASP ALA GLN LYS ALA THR PRO PRO LYS LEU GLU SEQRES 5 A 475 ASP LYS SER PRO ASP SER PRO GLU MET LYS ASP PHE ARG SEQRES 6 A 475 HIS GLY PHE ASP ILE LEU VAL GLY GLN ILE ASP ASP ALA SEQRES 7 A 475 LEU LYS LEU ALA ASN GLU GLY LYS VAL LYS GLU ALA GLN SEQRES 8 A 475 ALA ALA ALA GLU GLN LEU LYS THR THR ARG ASN ALA TYR SEQRES 9 A 475 ILE GLN LYS TYR LEU SER GLY GLN CYS GLU VAL PRO LEU SEQRES 10 A 475 VAL ARG THR ASP ASN PRO LYS SER TRP TYR GLU ASP VAL SEQRES 11 A 475 GLU GLY CYS GLY ILE GLN CYS GLN ASN PRO LEU PHE THR SEQRES 12 A 475 GLU ALA GLU HIS GLN ASP MET HIS SER TYR ILE ALA ALA SEQRES 13 A 475 PHE GLY ALA VAL THR GLY LEU CYS THR LEU PHE THR LEU SEQRES 14 A 475 ALA THR PHE VAL ALA ASP TRP ARG ASN SER ASN ARG TYR SEQRES 15 A 475 PRO ALA VAL ILE LEU PHE TYR VAL ASN ALA CYS PHE PHE SEQRES 16 A 475 VAL GLY SER ILE GLY TRP LEU ALA GLN PHE MET ASP GLY SEQRES 17 A 475 ALA ARG ARG GLU ILE VAL CYS ARG ALA ASP GLY THR MET SEQRES 18 A 475 ARG LEU GLY GLU PRO THR SER ASN GLU THR LEU SER CYS SEQRES 19 A 475 VAL ILE ILE PHE VAL ILE VAL TYR TYR ALA LEU MET ALA SEQRES 20 A 475 GLY VAL VAL TRP PHE VAL VAL LEU THR TYR ALA TRP HIS SEQRES 21 A 475 THR SER PHE LYS ALA LEU GLY THR THR TYR GLN PRO LEU SEQRES 22 A 475 SER GLY LYS THR SER TYR PHE HIS LEU LEU THR TRP SER SEQRES 23 A 475 LEU PRO PHE VAL LEU THR VAL ALA ILE LEU ALA VAL ALA SEQRES 24 A 475 GLN VAL ASP GLY ASP SER VAL SER GLY ILE CYS PHE VAL SEQRES 25 A 475 GLY TYR LYS ASN TYR ARG TYR ARG ALA GLY PHE VAL LEU SEQRES 26 A 475 ALA PRO ILE GLY LEU VAL LEU ILE VAL GLY GLY TYR PHE SEQRES 27 A 475 LEU ILE ARG GLY VAL MET THR LEU PHE SER ILE LYS SER SEQRES 28 A 475 ASN HIS PRO GLY LEU LEU SER GLU LYS ALA ALA SER LYS SEQRES 29 A 475 ILE ASN GLU THR MET LEU ARG LEU GLY ILE PHE GLY PHE SEQRES 30 A 475 LEU ALA PHE GLY PHE VAL LEU ILE THR PHE SER CYS HIS SEQRES 31 A 475 PHE TYR ASP PHE PHE ASN GLN ALA GLU TRP GLU ARG SER SEQRES 32 A 475 PHE ARG ASP TYR VAL LEU CYS GLN ALA ASN VAL THR ILE SEQRES 33 A 475 GLY LEU PRO THR LYS GLN PRO ILE PRO ASP CYS GLU ILE SEQRES 34 A 475 LYS ASN ARG PRO SER LEU LEU VAL GLU LYS ILE ASN LEU SEQRES 35 A 475 PHE ALA MET PHE GLY THR GLY ILE ALA MET SER THR TRP SEQRES 36 A 475 VAL TRP THR LYS ALA THR LEU LEU ILE TRP ARG ARG THR SEQRES 37 A 475 TRP CYS ARG LEU THR GLY GLN HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET SNT A 605 28 HET ZN A 606 1 HET ZN A 607 1 HET OLC A 608 15 HET OLC A 609 14 HET PEG A 610 7 HET PG4 A 611 13 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM SNT (E)-N-(4-BENZYLPIPERAZIN-1-YL)-1-(3,5-DIMETHYL-1- HETNAM 2 SNT PHENYL-1H-PYRAZOL-4-YL)METHANIMINE HETNAM ZN ZINC ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN SNT SANT-1 HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 SNT C23 H27 N5 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 OLC 2(C21 H40 O4) FORMUL 8 PEG C4 H10 O3 FORMUL 9 PG4 C8 H18 O5 FORMUL 10 HOH *8(H2 O) HELIX 1 1 ASP A 2 LYS A 19 1 18 HELIX 2 2 ASN A 22 LYS A 42 1 21 HELIX 3 3 SER A 55 GLU A 81 1 27 HELIX 4 4 LYS A 83 GLU A 92 1 10 HELIX 5 5 GLN A 93 LEU A 106 1 14 HELIX 6 6 THR A 223 ALA A 254 1 32 HELIX 7 7 ASP A 255 ASN A 260 1 6 HELIX 8 8 ALA A 264 ALA A 283 1 20 HELIX 9 9 GLN A 284 MET A 286 5 3 HELIX 10 10 GLY A 288 CYS A 295 1 8 HELIX 11 11 LEU A 312 SER A 342 1 31 HELIX 12 12 PHE A 343 LEU A 346 5 4 HELIX 13 13 LYS A 356 ALA A 379 1 24 HELIX 14 14 ASN A 396 VAL A 404 1 9 HELIX 15 15 VAL A 404 HIS A 433 1 30 HELIX 16 16 ILE A 445 GLN A 491 1 47 HELIX 17 17 SER A 514 THR A 534 1 21 HELIX 18 18 THR A 538 ARG A 551 1 14 SHEET 1 A 2 LEU A 197 ARG A 199 0 SHEET 2 A 2 CYS A 213 ILE A 215 -1 O GLY A 214 N VAL A 198 SHEET 1 B 2 VAL A 381 GLY A 383 0 SHEET 2 B 2 CYS A 390 VAL A 392 -1 O PHE A 391 N ASP A 382 SSBOND 1 CYS A 193 CYS A 213 1555 1555 2.04 SSBOND 2 CYS A 217 CYS A 295 1555 1555 2.04 SSBOND 3 CYS A 314 CYS A 390 1555 1555 2.05 SSBOND 4 CYS A 490 CYS A 507 1555 1555 2.04 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.47 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.47 LINK ND1 HIS A 63 ZN ZN A 606 1555 1555 2.01 LINK OD1 ASP A 66 ZN ZN A 606 1555 1555 1.90 LINK NE2 HIS A 433 ZN ZN A 607 1555 1555 1.91 LINK ZN ZN A 607 O HOH A 706 1555 1555 2.50 CISPEP 1 VAL A 195 PRO A 196 0 6.13 CISPEP 2 TYR A 262 PRO A 263 0 6.97 CISPEP 3 GLU A 305 PRO A 306 0 8.10 CRYST1 84.640 110.880 145.210 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006887 0.00000