HEADER TRANSFERASE 09-OCT-13 4N57 TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE APH(2'')-IVA TITLE 2 ADP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH(2'')-ID; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS CASSELIFLAVUS; SOURCE 3 ORGANISM_TAXID: 37734; SOURCE 4 GENE: APH(2'')-ID; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOGLYCOSIDE, PHOSPHOTRANSFERASE ANTIBIOTIC RESISTANCE, NUCLEOSIDE KEYWDS 2 DIPHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KAPLAN,N.LEBAN,L.CHALOIN,J.-F.GUICHOU,C.LIONNE REVDAT 3 20-SEP-23 4N57 1 REMARK SEQADV LINK REVDAT 2 17-JUL-19 4N57 1 REMARK REVDAT 1 17-DEC-14 4N57 0 JRNL AUTH E.KAPLAN,N.LEBAN,L.CHALOIN,J.-F.GUICHOU,C.LIONNE JRNL TITL CRYSTAL STRUCTURE OF AMINOGLYCOSIDE PHOSPHOTRANSFERASE JRNL TITL 2 APH(2'')-IVA ADP COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9423 - 5.3781 1.00 2627 111 0.1539 0.1640 REMARK 3 2 5.3781 - 4.2695 1.00 2530 130 0.1370 0.1838 REMARK 3 3 4.2695 - 3.7300 1.00 2529 141 0.1595 0.2099 REMARK 3 4 3.7300 - 3.3891 1.00 2512 130 0.1802 0.2888 REMARK 3 5 3.3891 - 3.1462 1.00 2479 147 0.2014 0.2848 REMARK 3 6 3.1462 - 2.9607 1.00 2518 108 0.2151 0.2959 REMARK 3 7 2.9607 - 2.8125 1.00 2489 149 0.2169 0.2925 REMARK 3 8 2.8125 - 2.6900 1.00 2510 148 0.2163 0.2890 REMARK 3 9 2.6900 - 2.5865 1.00 2466 158 0.2134 0.2786 REMARK 3 10 2.5865 - 2.4972 1.00 2486 147 0.2256 0.3237 REMARK 3 11 2.4972 - 2.4192 1.00 2454 153 0.2350 0.2959 REMARK 3 12 2.4192 - 2.3500 1.00 2457 144 0.2404 0.3017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : -2.44000 REMARK 3 B33 (A**2) : 1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5123 REMARK 3 ANGLE : 1.189 6921 REMARK 3 CHIRALITY : 0.045 728 REMARK 3 PLANARITY : 0.006 885 REMARK 3 DIHEDRAL : 17.615 1963 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1882 -1.4200 47.3085 REMARK 3 T TENSOR REMARK 3 T11: 0.3198 T22: 0.2229 REMARK 3 T33: 0.1993 T12: 0.0191 REMARK 3 T13: 0.0843 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 3.4780 L22: 2.5703 REMARK 3 L33: 5.3448 L12: -0.7914 REMARK 3 L13: 3.0221 L23: -2.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: -0.3082 S13: 0.0051 REMARK 3 S21: 0.4114 S22: -0.0402 S23: -0.0553 REMARK 3 S31: -0.1399 S32: -0.1834 S33: 0.1104 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6000 1.1858 26.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.2287 REMARK 3 T33: 0.2357 T12: 0.0153 REMARK 3 T13: -0.0154 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 5.8687 L22: 1.2365 REMARK 3 L33: 1.8632 L12: -0.3764 REMARK 3 L13: -2.5271 L23: -0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.3483 S13: 0.0007 REMARK 3 S21: -0.0893 S22: 0.0096 S23: -0.2320 REMARK 3 S31: 0.1334 S32: 0.2972 S33: 0.0493 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9896 12.4596 -1.7715 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.2018 REMARK 3 T33: 0.3521 T12: -0.0075 REMARK 3 T13: -0.0066 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.7124 L22: 2.7442 REMARK 3 L33: 5.1332 L12: -0.3213 REMARK 3 L13: -1.9632 L23: 0.1002 REMARK 3 S TENSOR REMARK 3 S11: 0.0937 S12: -0.0260 S13: -0.0143 REMARK 3 S21: -0.2092 S22: 0.0042 S23: -0.5472 REMARK 3 S31: -0.0540 S32: 0.2893 S33: -0.0762 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8338 22.5980 -0.1574 REMARK 3 T TENSOR REMARK 3 T11: 0.5560 T22: 0.3432 REMARK 3 T33: 0.5734 T12: -0.0715 REMARK 3 T13: -0.0461 T23: 0.1560 REMARK 3 L TENSOR REMARK 3 L11: 5.4186 L22: 3.3749 REMARK 3 L33: 6.3878 L12: 0.2627 REMARK 3 L13: 4.0940 L23: 1.8298 REMARK 3 S TENSOR REMARK 3 S11: -0.2233 S12: 0.4711 S13: 0.7215 REMARK 3 S21: -0.7640 S22: -0.0698 S23: 0.8461 REMARK 3 S31: 0.2079 S32: -0.3703 S33: 0.2861 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0973 11.8431 12.4163 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.2103 REMARK 3 T33: 0.1542 T12: -0.0196 REMARK 3 T13: -0.0112 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 6.9748 L22: 6.6342 REMARK 3 L33: 2.2861 L12: -2.5195 REMARK 3 L13: 0.3050 L23: -0.9994 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: -0.2618 S13: -0.4415 REMARK 3 S21: 0.3184 S22: 0.0865 S23: 0.3791 REMARK 3 S31: 0.1467 S32: -0.2111 S33: -0.1112 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 257 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2963 9.6722 -0.9357 REMARK 3 T TENSOR REMARK 3 T11: 0.8557 T22: 0.3816 REMARK 3 T33: 0.6300 T12: -0.0630 REMARK 3 T13: -0.1571 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 8.9744 L22: 8.3124 REMARK 3 L33: 7.1281 L12: 3.0418 REMARK 3 L13: 5.9226 L23: 2.6067 REMARK 3 S TENSOR REMARK 3 S11: 0.1552 S12: 1.0356 S13: -0.4581 REMARK 3 S21: -1.5861 S22: 0.3077 S23: 1.0019 REMARK 3 S31: 0.6917 S32: 0.0550 S33: -0.4639 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000082766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 10.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 49.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06700 REMARK 200 R SYM FOR SHELL (I) : 0.06700 REMARK 200 FOR SHELL : 10.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3N4V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 75 MM AMMONIUM CITRATE 12% PEG3350, PH REMARK 280 7.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.90100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ILE A 300 REMARK 465 LYS A 301 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ILE B 300 REMARK 465 LYS B 301 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 52 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 538 O HOH B 582 1.97 REMARK 500 O HOH A 529 O HOH B 628 2.01 REMARK 500 O HOH A 529 O HOH B 629 2.06 REMARK 500 OE2 GLU B 164 NZ LYS B 280 2.14 REMARK 500 OG SER A 28 O HOH A 520 2.17 REMARK 500 O SER B 297 O HOH B 569 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 598 O HOH B 599 2655 1.90 REMARK 500 O HOH A 510 O HOH A 577 2546 1.96 REMARK 500 O HOH B 512 O HOH B 539 2645 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 -35.34 69.14 REMARK 500 SER A 85 79.13 -151.11 REMARK 500 GLU A 86 -73.93 68.28 REMARK 500 LYS A 188 78.17 -103.09 REMARK 500 ASP A 197 45.93 -146.77 REMARK 500 ASP A 217 80.51 51.84 REMARK 500 SER A 224 -150.65 -159.63 REMARK 500 GLU A 238 -49.84 85.17 REMARK 500 GLU A 239 -165.83 -116.41 REMARK 500 LYS A 253 33.25 77.32 REMARK 500 TYR A 282 -104.66 -110.36 REMARK 500 ARG B 41 -41.65 78.44 REMARK 500 GLU B 86 -107.98 54.25 REMARK 500 ASP B 197 43.80 -146.69 REMARK 500 ASP B 217 91.55 69.37 REMARK 500 SER B 224 -156.45 -158.74 REMARK 500 ASP B 237 -57.29 75.01 REMARK 500 GLU B 239 -153.41 -130.68 REMARK 500 LYS B 253 33.31 70.41 REMARK 500 TYR B 282 -16.53 84.90 REMARK 500 ASP B 286 -61.24 155.77 REMARK 500 ARG B 296 73.56 -69.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 217 OD2 REMARK 620 2 ADP A 403 O1A 86.3 REMARK 620 3 ADP A 403 O3B 67.4 101.8 REMARK 620 4 HOH A 557 O 153.2 75.8 135.2 REMARK 620 5 HOH A 599 O 72.3 158.4 67.5 125.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 217 OD1 REMARK 620 2 ASP A 217 OD2 51.5 REMARK 620 3 ADP A 403 O1B 77.5 82.4 REMARK 620 4 ADP A 403 O3B 98.8 59.1 56.0 REMARK 620 5 HOH A 568 O 75.6 65.2 146.4 109.1 REMARK 620 6 HOH A 574 O 106.9 158.4 94.1 135.0 112.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 217 OD2 REMARK 620 2 ADP B 403 O1A 79.1 REMARK 620 3 ADP B 403 O1B 84.0 88.3 REMARK 620 4 HOH B 571 O 165.0 89.2 105.3 REMARK 620 5 HOH B 611 O 83.7 162.0 84.4 108.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 217 OD1 REMARK 620 2 ASP B 217 OD2 55.3 REMARK 620 3 ADP B 403 O2B 84.4 92.0 REMARK 620 4 ADP B 403 O1B 105.2 64.7 56.5 REMARK 620 5 HOH B 580 O 100.8 154.9 93.0 136.7 REMARK 620 6 HOH B 581 O 85.5 86.4 168.7 131.7 83.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 403 DBREF 4N57 A 1 301 UNP O68183 O68183_ENTCA 1 301 DBREF 4N57 B 1 301 UNP O68183 O68183_ENTCA 1 301 SEQADV 4N57 MET A -19 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLY A -18 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER A -17 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER A -16 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS A -15 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS A -14 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS A -13 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS A -12 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS A -11 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS A -10 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER A -9 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER A -8 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLY A -7 UNP O68183 EXPRESSION TAG SEQADV 4N57 LEU A -6 UNP O68183 EXPRESSION TAG SEQADV 4N57 VAL A -5 UNP O68183 EXPRESSION TAG SEQADV 4N57 PRO A -4 UNP O68183 EXPRESSION TAG SEQADV 4N57 ARG A -3 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLY A -2 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER A -1 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS A 0 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLN A 26 UNP O68183 GLU 26 ENGINEERED MUTATION SEQADV 4N57 LYS A 30 UNP O68183 GLU 30 ENGINEERED MUTATION SEQADV 4N57 MET B -19 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLY B -18 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER B -17 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER B -16 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS B -15 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS B -14 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS B -13 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS B -12 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS B -11 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS B -10 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER B -9 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER B -8 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLY B -7 UNP O68183 EXPRESSION TAG SEQADV 4N57 LEU B -6 UNP O68183 EXPRESSION TAG SEQADV 4N57 VAL B -5 UNP O68183 EXPRESSION TAG SEQADV 4N57 PRO B -4 UNP O68183 EXPRESSION TAG SEQADV 4N57 ARG B -3 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLY B -2 UNP O68183 EXPRESSION TAG SEQADV 4N57 SER B -1 UNP O68183 EXPRESSION TAG SEQADV 4N57 HIS B 0 UNP O68183 EXPRESSION TAG SEQADV 4N57 GLN B 26 UNP O68183 GLU 26 ENGINEERED MUTATION SEQADV 4N57 LYS B 30 UNP O68183 GLU 30 ENGINEERED MUTATION SEQRES 1 A 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 321 LEU VAL PRO ARG GLY SER HIS MET ARG THR TYR THR PHE SEQRES 3 A 321 ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO ASP SEQRES 4 A 321 PHE THR ILE ASN THR ILE GLN ILE SER GLY LYS GLY ASN SEQRES 5 A 321 ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE PHE SEQRES 6 A 321 LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU PHE SEQRES 7 A 321 ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS LEU SEQRES 8 A 321 PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MET PRO SEQRES 9 A 321 SER GLU THR TYR GLN MET SER PHE ALA GLY PHE THR LYS SEQRES 10 A 321 ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN ASN SEQRES 11 A 321 LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP LEU SEQRES 12 A 321 ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SER SEQRES 13 A 321 GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU LYS SEQRES 14 A 321 ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SER SEQRES 15 A 321 ARG GLU LEU LYS GLY PRO GLN MET LYS LYS VAL ASP ASP SEQRES 16 A 321 PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE LYS SEQRES 17 A 321 TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER ASP SEQRES 18 A 321 HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS GLY SEQRES 19 A 321 ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO ASP SEQRES 20 A 321 ASN ASP PHE ILE SER LEU MET GLU ASP ASP GLU GLU TYR SEQRES 21 A 321 GLY MET GLU PHE VAL SER LYS ILE LEU ASN HIS TYR LYS SEQRES 22 A 321 HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG MET SEQRES 23 A 321 LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR GLY SEQRES 24 A 321 LYS GLU TYR GLY TYR MET ASP TRP TYR GLU GLU GLY LEU SEQRES 25 A 321 ASN GLU ILE ARG SER ILE LYS ILE LYS SEQRES 1 B 321 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 321 LEU VAL PRO ARG GLY SER HIS MET ARG THR TYR THR PHE SEQRES 3 B 321 ASP GLN VAL GLU LYS ALA ILE GLU GLN LEU TYR PRO ASP SEQRES 4 B 321 PHE THR ILE ASN THR ILE GLN ILE SER GLY LYS GLY ASN SEQRES 5 B 321 ASP CYS ILE ALA TYR GLU ILE ASN ARG ASP PHE ILE PHE SEQRES 6 B 321 LYS PHE PRO LYS HIS SER ARG GLY SER THR ASN LEU PHE SEQRES 7 B 321 ASN GLU VAL ASN ILE LEU LYS ARG ILE HIS ASN LYS LEU SEQRES 8 B 321 PRO LEU PRO ILE PRO GLU VAL VAL PHE THR GLY MET PRO SEQRES 9 B 321 SER GLU THR TYR GLN MET SER PHE ALA GLY PHE THR LYS SEQRES 10 B 321 ILE LYS GLY VAL PRO LEU THR PRO LEU LEU LEU ASN ASN SEQRES 11 B 321 LEU PRO LYS GLN SER GLN ASN GLN ALA ALA LYS ASP LEU SEQRES 12 B 321 ALA ARG PHE LEU SER GLU LEU HIS SER ILE ASN ILE SER SEQRES 13 B 321 GLY PHE LYS SER ASN LEU VAL LEU ASP PHE ARG GLU LYS SEQRES 14 B 321 ILE ASN GLU ASP ASN LYS LYS ILE LYS LYS LEU LEU SER SEQRES 15 B 321 ARG GLU LEU LYS GLY PRO GLN MET LYS LYS VAL ASP ASP SEQRES 16 B 321 PHE TYR ARG ASP ILE LEU GLU ASN GLU ILE TYR PHE LYS SEQRES 17 B 321 TYR TYR PRO CYS LEU ILE HIS ASN ASP PHE SER SER ASP SEQRES 18 B 321 HIS ILE LEU PHE ASP THR GLU LYS ASN THR ILE CYS GLY SEQRES 19 B 321 ILE ILE ASP PHE GLY ASP ALA ALA ILE SER ASP PRO ASP SEQRES 20 B 321 ASN ASP PHE ILE SER LEU MET GLU ASP ASP GLU GLU TYR SEQRES 21 B 321 GLY MET GLU PHE VAL SER LYS ILE LEU ASN HIS TYR LYS SEQRES 22 B 321 HIS LYS ASP ILE PRO THR VAL LEU GLU LYS TYR ARG MET SEQRES 23 B 321 LYS GLU LYS TYR TRP SER PHE GLU LYS ILE ILE TYR GLY SEQRES 24 B 321 LYS GLU TYR GLY TYR MET ASP TRP TYR GLU GLU GLY LEU SEQRES 25 B 321 ASN GLU ILE ARG SER ILE LYS ILE LYS HET MG A 401 1 HET MG A 402 1 HET ADP A 403 27 HET MG B 401 1 HET MG B 402 1 HET ADP B 403 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 4(MG 2+) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 9 HOH *240(H2 O) HELIX 1 1 THR A 5 TYR A 17 1 13 HELIX 2 2 HIS A 50 ILE A 67 1 18 HELIX 3 3 THR A 104 ASN A 110 1 7 HELIX 4 4 PRO A 112 HIS A 131 1 20 HELIX 5 5 LYS A 139 VAL A 143 5 5 HELIX 6 6 ASP A 145 LEU A 161 1 17 HELIX 7 7 LYS A 166 ASN A 183 1 18 HELIX 8 8 GLU A 184 PHE A 187 5 4 HELIX 9 9 SER A 199 ASP A 201 5 3 HELIX 10 10 ASP A 227 SER A 232 1 6 HELIX 11 11 GLY A 241 LYS A 253 1 13 HELIX 12 12 ASP A 256 TYR A 282 1 27 HELIX 13 13 TYR A 284 SER A 297 1 14 HELIX 14 14 THR B 5 TYR B 17 1 13 HELIX 15 15 HIS B 50 ILE B 67 1 18 HELIX 16 16 THR B 104 ASN B 109 1 6 HELIX 17 17 PRO B 112 HIS B 131 1 20 HELIX 18 18 SER B 132 ILE B 133 5 2 HELIX 19 19 ASN B 134 PHE B 138 5 5 HELIX 20 20 LYS B 139 VAL B 143 5 5 HELIX 21 21 ASP B 145 LEU B 161 1 17 HELIX 22 22 GLY B 167 GLU B 182 1 16 HELIX 23 23 ASN B 183 PHE B 187 5 5 HELIX 24 24 SER B 199 ASP B 201 5 3 HELIX 25 25 ASP B 227 SER B 232 1 6 HELIX 26 26 GLY B 241 LYS B 253 1 13 HELIX 27 27 ASP B 256 GLU B 281 1 26 HELIX 28 28 ASP B 286 ARG B 296 1 11 SHEET 1 A 5 ILE A 25 LYS A 30 0 SHEET 2 A 5 CYS A 34 ILE A 39 -1 O ALA A 36 N GLY A 29 SHEET 3 A 5 PHE A 43 PRO A 48 -1 O PHE A 45 N TYR A 37 SHEET 4 A 5 ALA A 93 THR A 96 -1 O ALA A 93 N LYS A 46 SHEET 5 A 5 VAL A 78 THR A 81 -1 N VAL A 79 O GLY A 94 SHEET 1 B 3 VAL A 101 PRO A 102 0 SHEET 2 B 3 ILE A 203 ASP A 206 -1 O PHE A 205 N VAL A 101 SHEET 3 B 3 THR A 211 ILE A 215 -1 O THR A 211 N ASP A 206 SHEET 1 C 2 CYS A 192 ILE A 194 0 SHEET 2 C 2 ALA A 222 SER A 224 -1 O ALA A 222 N ILE A 194 SHEET 1 D 5 ILE B 25 LYS B 30 0 SHEET 2 D 5 CYS B 34 ILE B 39 -1 O GLU B 38 N GLN B 26 SHEET 3 D 5 PHE B 43 PRO B 48 -1 O PHE B 45 N TYR B 37 SHEET 4 D 5 ALA B 93 THR B 96 -1 O PHE B 95 N ILE B 44 SHEET 5 D 5 VAL B 78 THR B 81 -1 N VAL B 79 O GLY B 94 SHEET 1 E 3 VAL B 101 PRO B 102 0 SHEET 2 E 3 ILE B 203 ASP B 206 -1 O PHE B 205 N VAL B 101 SHEET 3 E 3 THR B 211 ILE B 215 -1 O GLY B 214 N LEU B 204 SHEET 1 F 2 CYS B 192 ILE B 194 0 SHEET 2 F 2 ALA B 222 SER B 224 -1 O ALA B 222 N ILE B 194 LINK OD2 ASP A 217 MG MG A 401 1555 1555 2.45 LINK OD1 ASP A 217 MG MG A 402 1555 1555 2.47 LINK OD2 ASP A 217 MG MG A 402 1555 1555 2.55 LINK MG MG A 401 O1A ADP A 403 1555 1555 1.90 LINK MG MG A 401 O3B ADP A 403 1555 1555 2.35 LINK MG MG A 401 O HOH A 557 1555 1555 2.63 LINK MG MG A 401 O HOH A 599 1555 1555 2.41 LINK MG MG A 402 O1B ADP A 403 1555 1555 2.47 LINK MG MG A 402 O3B ADP A 403 1555 1555 2.83 LINK MG MG A 402 O HOH A 568 1555 1555 2.09 LINK MG MG A 402 O HOH A 574 1555 1555 2.04 LINK OD2 ASP B 217 MG MG B 401 1555 1555 2.24 LINK OD1 ASP B 217 MG MG B 402 1555 1555 2.30 LINK OD2 ASP B 217 MG MG B 402 1555 1555 2.37 LINK MG MG B 401 O1A ADP B 403 1555 1555 2.09 LINK MG MG B 401 O1B ADP B 403 1555 1555 2.11 LINK MG MG B 401 O HOH B 571 1555 1555 2.26 LINK MG MG B 401 O HOH B 611 1555 1555 2.39 LINK MG MG B 402 O2B ADP B 403 1555 1555 2.04 LINK MG MG B 402 O1B ADP B 403 1555 1555 2.98 LINK MG MG B 402 O HOH B 580 1555 1555 2.09 LINK MG MG B 402 O HOH B 581 1555 1555 2.24 SITE 1 AC1 5 HIS A 202 ASP A 217 ADP A 403 HOH A 557 SITE 2 AC1 5 HOH A 599 SITE 1 AC2 5 ASP A 217 ASP A 220 ADP A 403 HOH A 568 SITE 2 AC2 5 HOH A 574 SITE 1 AC3 22 GLY A 31 ASN A 32 ASP A 33 CYS A 34 SITE 2 AC3 22 ALA A 36 ILE A 44 LYS A 46 PRO A 76 SITE 3 AC3 22 THR A 96 LYS A 97 ILE A 98 HIS A 202 SITE 4 AC3 22 ILE A 216 ASP A 217 MG A 401 MG A 402 SITE 5 AC3 22 HOH A 513 HOH A 557 HOH A 575 HOH A 588 SITE 6 AC3 22 HOH A 589 HOH A 599 SITE 1 AC4 5 HIS B 202 ASP B 217 ADP B 403 HOH B 571 SITE 2 AC4 5 HOH B 611 SITE 1 AC5 4 ASP B 217 ADP B 403 HOH B 580 HOH B 581 SITE 1 AC6 24 SER B 28 GLY B 31 ASN B 32 ASP B 33 SITE 2 AC6 24 CYS B 34 ALA B 36 ILE B 44 LYS B 46 SITE 3 AC6 24 PRO B 76 THR B 96 ILE B 98 HIS B 202 SITE 4 AC6 24 ILE B 216 ASP B 217 MG B 401 MG B 402 SITE 5 AC6 24 HOH B 519 HOH B 521 HOH B 522 HOH B 571 SITE 6 AC6 24 HOH B 580 HOH B 586 HOH B 611 HOH B 624 CRYST1 76.051 65.802 76.731 90.00 92.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013149 0.000000 0.000558 0.00000 SCALE2 0.000000 0.015197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013044 0.00000