HEADER HYDROLASE 09-OCT-13 4N59 TITLE THE CRYSTAL STRUCTURE OF PECTOCIN M2 AT 2.3 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PECTOCIN M2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM CAROTOVORUM SUBSP. BRASILIENSIS; SOURCE 3 ORGANISM_TAXID: 558269; SOURCE 4 STRAIN: PBR1692; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS LIPID-II HYDROLASE, BACTERIOCIN, PROTEIN ANTIBIOTIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,R.GRINTER,A.W.ROSZAK,R.J.COGDELL,D.WALKER REVDAT 3 20-SEP-23 4N59 1 REMARK LINK REVDAT 2 13-AUG-14 4N59 1 JRNL REVDAT 1 04-JUN-14 4N59 0 JRNL AUTH R.GRINTER,I.JOSTS,K.ZETH,A.W.ROSZAK,L.C.MCCAUGHEY, JRNL AUTH 2 R.J.COGDELL,J.J.MILNER,S.M.KELLY,O.BYRON,D.WALKER JRNL TITL STRUCTURE OF THE ATYPICAL BACTERIOCIN PECTOCIN M2 IMPLIES A JRNL TITL 2 NOVEL MECHANISM OF PROTEIN UPTAKE. JRNL REF MOL.MICROBIOL. V. 93 234 2014 JRNL REFN ISSN 0950-382X JRNL PMID 24865810 JRNL DOI 10.1111/MMI.12655 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1384 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4079 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : 1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.992 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4200 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3836 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5689 ; 1.700 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8890 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 6.752 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;40.071 ;25.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 707 ;17.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4796 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 915 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2104 ; 2.461 ; 2.040 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2103 ; 2.457 ; 2.034 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2625 ; 4.120 ; 3.032 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2666 ; 4.374 ; 5.077 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2096 ; 3.053 ; 2.426 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2120 ; 2.944 ; 3.789 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3093 ; 4.687 ; 5.553 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4760 ; 8.263 ;26.948 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4751 ; 8.254 ;26.934 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 111 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0808 2.3753 35.0853 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.5883 REMARK 3 T33: 0.3626 T12: 0.1484 REMARK 3 T13: 0.0002 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.0753 L22: 1.5892 REMARK 3 L33: 2.7942 L12: 0.0454 REMARK 3 L13: 0.5627 L23: -1.4902 REMARK 3 S TENSOR REMARK 3 S11: 0.1946 S12: 0.5015 S13: -0.1922 REMARK 3 S21: -0.0635 S22: -0.0501 S23: 0.1433 REMARK 3 S31: -0.0604 S32: -0.0029 S33: -0.1445 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2621 3.8369 65.3263 REMARK 3 T TENSOR REMARK 3 T11: 0.4748 T22: 0.4476 REMARK 3 T33: 0.4608 T12: -0.0219 REMARK 3 T13: -0.0018 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 1.3803 L22: 3.4961 REMARK 3 L33: 0.2881 L12: 1.2004 REMARK 3 L13: 0.6005 L23: 0.4609 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.0017 S13: -0.1131 REMARK 3 S21: 0.2960 S22: -0.1322 S23: -0.1025 REMARK 3 S31: 0.0289 S32: 0.0537 S33: 0.0635 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 111 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8642 32.1512 88.2455 REMARK 3 T TENSOR REMARK 3 T11: 1.3598 T22: 0.4877 REMARK 3 T33: 0.3547 T12: 0.2279 REMARK 3 T13: -0.1554 T23: -0.1287 REMARK 3 L TENSOR REMARK 3 L11: 3.5684 L22: 3.3688 REMARK 3 L33: 8.7700 L12: 1.3040 REMARK 3 L13: -3.8702 L23: -4.9675 REMARK 3 S TENSOR REMARK 3 S11: -0.8863 S12: -0.2256 S13: 0.0458 REMARK 3 S21: 1.3365 S22: 0.4673 S23: -0.5803 REMARK 3 S31: -1.3575 S32: -0.3917 S33: 0.4191 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 271 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2787 25.1815 55.2414 REMARK 3 T TENSOR REMARK 3 T11: 0.4296 T22: 0.4468 REMARK 3 T33: 0.4747 T12: 0.0260 REMARK 3 T13: -0.0218 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 2.1170 L22: 3.1735 REMARK 3 L33: 0.3144 L12: -1.9605 REMARK 3 L13: -0.6966 L23: 0.8305 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: 0.1018 S13: 0.0332 REMARK 3 S21: -0.0169 S22: -0.2635 S23: 0.0411 REMARK 3 S31: -0.0286 S32: 0.0632 S33: 0.1251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4N58 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % PEG3350, 0.2 M AMMONIUM SULPHATE, REMARK 280 3% MPD, 0.1M BIS-TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.37250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 243 REMARK 465 THR A 244 REMARK 465 GLY A 245 REMARK 465 VAL A 246 REMARK 465 LEU A 247 REMARK 465 ASN A 248 REMARK 465 ASN A 249 REMARK 465 LEU A 250 REMARK 465 LEU A 272 REMARK 465 GLU A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 MET B 1 REMARK 465 SER B 233 REMARK 465 THR B 234 REMARK 465 HIS B 235 REMARK 465 ARG B 236 REMARK 465 GLY B 237 REMARK 465 ALA B 238 REMARK 465 LEU B 239 REMARK 465 GLY B 240 REMARK 465 GLU B 241 REMARK 465 TRP B 242 REMARK 465 ALA B 243 REMARK 465 THR B 244 REMARK 465 GLY B 245 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 248 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 -69.90 -145.26 REMARK 500 ARG A 39 17.32 57.07 REMARK 500 CYS A 43 -158.95 -147.68 REMARK 500 CYS A 76 23.91 -145.30 REMARK 500 CYS A 76 33.35 -149.63 REMARK 500 SER A 81 -178.85 -170.59 REMARK 500 LYS A 170 73.77 -69.54 REMARK 500 THR A 185 0.94 -67.58 REMARK 500 SER B 37 -85.01 -150.61 REMARK 500 ARG B 39 10.18 56.29 REMARK 500 CYS B 76 50.04 -142.56 REMARK 500 ASN B 168 30.63 -93.35 REMARK 500 LEU B 272 108.76 -51.12 REMARK 500 HIS B 274 129.85 -33.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 38 SG REMARK 620 2 FES A 301 S1 118.2 REMARK 620 3 FES A 301 S2 109.5 97.1 REMARK 620 4 CYS A 43 SG 104.8 110.5 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 FES A 301 S1 112.4 REMARK 620 3 FES A 301 S2 106.8 97.3 REMARK 620 4 CYS A 75 SG 106.6 121.9 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 38 SG REMARK 620 2 FES B 301 S1 119.1 REMARK 620 3 FES B 301 S2 92.5 97.0 REMARK 620 4 CYS B 43 SG 115.3 112.6 117.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 FES B 301 S1 103.1 REMARK 620 3 FES B 301 S2 110.8 97.9 REMARK 620 4 CYS B 75 SG 108.1 128.5 107.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N58 RELATED DB: PDB REMARK 900 RELATED ID: 4FZM RELATED DB: PDB REMARK 900 RELATED ID: 4FZN RELATED DB: PDB REMARK 900 RELATED ID: 4FZL RELATED DB: PDB REMARK 900 RELATED ID: 4G75 RELATED DB: PDB REMARK 900 RELATED ID: 2XMX RELATED DB: PDB DBREF 4N59 A 1 279 PDB 4N59 4N59 1 279 DBREF 4N59 B 1 279 PDB 4N59 4N59 1 279 SEQRES 1 A 279 MET ALA THR TYR LYS VAL LYS ASP VAL THR THR GLY ALA SEQRES 2 A 279 GLU ILE GLU VAL PRO ASP ASP LYS TYR ILE LEU ASP GLU SEQRES 3 A 279 PHE GLU LYS GLN GLY VAL ASN LEU PRO TYR SER CYS ARG SEQRES 4 A 279 ALA GLY ALA CYS SER SER CYS VAL ALA LEU ILE SER SER SEQRES 5 A 279 GLY GLU VAL ASP GLN SER ASP GLY SER PHE LEU SER GLU SEQRES 6 A 279 LYS GLN GLU LYS LYS TYR ILE LEU THR CYS CYS SER TYR SEQRES 7 A 279 PRO LYS SER ASP CYS THR ILE GLU THR GLY TYR GLU ASP SEQRES 8 A 279 LYS ILE LEU GLU ASP PHE GLU ILE GLU LEU ALA GLU THR SEQRES 9 A 279 GLY LEU GLU PHE PHE ASN ASP LEU LYS ASP SER LEU PRO SEQRES 10 A 279 ARG SER GLY GLU ILE LEU SER GLY VAL THR ALA PRO PHE SEQRES 11 A 279 GLU ALA PHE ASP HIS TYR LEU PHE GLY ASN GLY VAL GLU SEQRES 12 A 279 ARG SER ILE ASN ILE ASN ASP VAL GLY PHE ASN ILE ASN SEQRES 13 A 279 VAL SER GLN ILE PRO PRO ILE MET SER LEU LEU ASN GLY SEQRES 14 A 279 LYS ASN VAL GLY ARG PHE ASP ILE GLY SER ASP PHE VAL SEQRES 15 A 279 ARG ASN THR ALA LEU ASP GLY TYR SER VAL ALA ALA TYR SEQRES 16 A 279 LEU GLY ASN ILE THR MET ARG THR GLU GLY VAL LEU ASN SEQRES 17 A 279 VAL LYS SER ASP GLY THR TRP GLN TYR GLU GLY VAL ILE SEQRES 18 A 279 ARG SER TYR ASN ASP THR TYR ASP ALA ASN PRO SER THR SEQRES 19 A 279 HIS ARG GLY ALA LEU GLY GLU TRP ALA THR GLY VAL LEU SEQRES 20 A 279 ASN ASN LEU SER GLY THR PRO TYR GLU ILE ARG ILE PRO SEQRES 21 A 279 GLY GLU LEU LYS ILE LYS GLU ASN GLY LYS LYS LEU GLU SEQRES 22 A 279 HIS HIS HIS HIS HIS HIS SEQRES 1 B 279 MET ALA THR TYR LYS VAL LYS ASP VAL THR THR GLY ALA SEQRES 2 B 279 GLU ILE GLU VAL PRO ASP ASP LYS TYR ILE LEU ASP GLU SEQRES 3 B 279 PHE GLU LYS GLN GLY VAL ASN LEU PRO TYR SER CYS ARG SEQRES 4 B 279 ALA GLY ALA CYS SER SER CYS VAL ALA LEU ILE SER SER SEQRES 5 B 279 GLY GLU VAL ASP GLN SER ASP GLY SER PHE LEU SER GLU SEQRES 6 B 279 LYS GLN GLU LYS LYS TYR ILE LEU THR CYS CYS SER TYR SEQRES 7 B 279 PRO LYS SER ASP CYS THR ILE GLU THR GLY TYR GLU ASP SEQRES 8 B 279 LYS ILE LEU GLU ASP PHE GLU ILE GLU LEU ALA GLU THR SEQRES 9 B 279 GLY LEU GLU PHE PHE ASN ASP LEU LYS ASP SER LEU PRO SEQRES 10 B 279 ARG SER GLY GLU ILE LEU SER GLY VAL THR ALA PRO PHE SEQRES 11 B 279 GLU ALA PHE ASP HIS TYR LEU PHE GLY ASN GLY VAL GLU SEQRES 12 B 279 ARG SER ILE ASN ILE ASN ASP VAL GLY PHE ASN ILE ASN SEQRES 13 B 279 VAL SER GLN ILE PRO PRO ILE MET SER LEU LEU ASN GLY SEQRES 14 B 279 LYS ASN VAL GLY ARG PHE ASP ILE GLY SER ASP PHE VAL SEQRES 15 B 279 ARG ASN THR ALA LEU ASP GLY TYR SER VAL ALA ALA TYR SEQRES 16 B 279 LEU GLY ASN ILE THR MET ARG THR GLU GLY VAL LEU ASN SEQRES 17 B 279 VAL LYS SER ASP GLY THR TRP GLN TYR GLU GLY VAL ILE SEQRES 18 B 279 ARG SER TYR ASN ASP THR TYR ASP ALA ASN PRO SER THR SEQRES 19 B 279 HIS ARG GLY ALA LEU GLY GLU TRP ALA THR GLY VAL LEU SEQRES 20 B 279 ASN ASN LEU SER GLY THR PRO TYR GLU ILE ARG ILE PRO SEQRES 21 B 279 GLY GLU LEU LYS ILE LYS GLU ASN GLY LYS LYS LEU GLU SEQRES 22 B 279 HIS HIS HIS HIS HIS HIS HET FES A 301 4 HET SO4 A 302 5 HET SO4 A 303 5 HET CL A 304 1 HET FES B 301 4 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 FES 2(FE2 S2) FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 11 HOH *51(H2 O) HELIX 1 1 TYR A 22 GLN A 30 1 9 HELIX 2 2 LYS A 66 LYS A 69 5 4 HELIX 3 3 CYS A 75 SER A 77 5 3 HELIX 4 4 TYR A 89 ILE A 93 5 5 HELIX 5 5 GLU A 95 ASP A 111 1 17 HELIX 6 6 THR A 127 GLY A 139 1 13 HELIX 7 7 ASN A 156 GLN A 159 5 4 HELIX 8 8 ILE A 160 ASN A 168 1 9 HELIX 9 9 ALA A 186 ASP A 188 5 3 HELIX 10 10 GLY A 189 GLY A 197 1 9 HELIX 11 11 THR A 234 GLU A 241 1 8 HELIX 12 12 TYR B 22 GLN B 30 1 9 HELIX 13 13 SER B 64 LYS B 69 1 6 HELIX 14 14 CYS B 75 SER B 77 5 3 HELIX 15 15 TYR B 89 ILE B 93 5 5 HELIX 16 16 GLU B 95 GLU B 103 1 9 HELIX 17 17 GLY B 105 LYS B 113 1 9 HELIX 18 18 ASP B 114 LEU B 116 5 3 HELIX 19 19 THR B 127 GLY B 139 1 13 HELIX 20 20 ASN B 147 VAL B 151 5 5 HELIX 21 21 ASN B 156 GLN B 159 5 4 HELIX 22 22 ILE B 160 ASN B 168 1 9 HELIX 23 23 ALA B 186 ASP B 188 5 3 HELIX 24 24 GLY B 189 GLY B 197 1 9 SHEET 1 A 5 GLU A 14 PRO A 18 0 SHEET 2 A 5 THR A 3 ASP A 8 -1 N VAL A 6 O ILE A 15 SHEET 3 A 5 CYS A 83 GLU A 86 1 O ILE A 85 N LYS A 7 SHEET 4 A 5 VAL A 47 SER A 52 -1 N SER A 51 O THR A 84 SHEET 5 A 5 TYR A 71 LEU A 73 -1 O ILE A 72 N ALA A 48 SHEET 1 B 2 VAL A 55 ASP A 56 0 SHEET 2 B 2 TYR A 78 PRO A 79 -1 O TYR A 78 N ASP A 56 SHEET 1 C 4 GLY A 120 GLU A 121 0 SHEET 2 C 4 ARG A 144 SER A 145 1 O SER A 145 N GLY A 120 SHEET 3 C 4 TYR A 255 ARG A 258 1 O ARG A 258 N ARG A 144 SHEET 4 C 4 ASP A 226 TYR A 228 -1 N TYR A 228 O TYR A 255 SHEET 1 D 4 GLY A 173 ASN A 184 0 SHEET 2 D 4 ASN A 198 VAL A 209 -1 O MET A 201 N PHE A 181 SHEET 3 D 4 THR A 214 SER A 223 -1 O GLN A 216 N ASN A 208 SHEET 4 D 4 LEU A 263 LYS A 270 -1 O LEU A 263 N ILE A 221 SHEET 1 E 5 ALA B 13 VAL B 17 0 SHEET 2 E 5 TYR B 4 ASP B 8 -1 N ASP B 8 O ALA B 13 SHEET 3 E 5 CYS B 83 GLU B 86 1 O CYS B 83 N LYS B 7 SHEET 4 E 5 VAL B 47 SER B 52 -1 N LEU B 49 O GLU B 86 SHEET 5 E 5 TYR B 71 LEU B 73 -1 O ILE B 72 N ALA B 48 SHEET 1 F 2 VAL B 55 ASP B 56 0 SHEET 2 F 2 TYR B 78 PRO B 79 -1 O TYR B 78 N ASP B 56 SHEET 1 G 4 GLY B 120 GLU B 121 0 SHEET 2 G 4 ARG B 144 SER B 145 1 O SER B 145 N GLY B 120 SHEET 3 G 4 TYR B 255 ARG B 258 1 O ARG B 258 N ARG B 144 SHEET 4 G 4 ASP B 226 TYR B 228 -1 N ASP B 226 O ILE B 257 SHEET 1 H 4 GLY B 173 ASN B 184 0 SHEET 2 H 4 ASN B 198 VAL B 209 -1 O MET B 201 N PHE B 181 SHEET 3 H 4 THR B 214 SER B 223 -1 O GLU B 218 N VAL B 206 SHEET 4 H 4 LEU B 263 LYS B 270 -1 O GLU B 267 N TYR B 217 LINK SG CYS A 38 FE1 FES A 301 1555 1555 2.31 LINK SG CYS A 43 FE1 FES A 301 1555 1555 2.39 LINK SG CYS A 46 FE2 FES A 301 1555 1555 2.33 LINK SG CYS A 75 FE2 FES A 301 1555 1555 2.21 LINK SG CYS B 38 FE1 FES B 301 1555 1555 2.43 LINK SG CYS B 43 FE1 FES B 301 1555 1555 1.89 LINK SG CYS B 46 FE2 FES B 301 1555 1555 2.48 LINK SG CYS B 75 FE2 FES B 301 1555 1555 2.11 SITE 1 AC1 8 SER A 37 CYS A 38 ARG A 39 GLY A 41 SITE 2 AC1 8 ALA A 42 CYS A 43 CYS A 46 CYS A 75 SITE 1 AC2 5 THR A 234 HIS A 235 ARG A 236 HOH A 412 SITE 2 AC2 5 HOH A 423 SITE 1 AC3 1 ARG A 258 SITE 1 AC4 8 SER B 37 CYS B 38 ARG B 39 GLY B 41 SITE 2 AC4 8 ALA B 42 CYS B 43 CYS B 46 CYS B 75 SITE 1 AC5 3 ASN B 147 GLY B 261 GLU B 262 SITE 1 AC6 2 ARG B 258 PRO B 260 SITE 1 AC7 3 GLY B 197 ASN B 198 HOH B 419 CRYST1 44.649 116.745 60.790 90.00 94.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022397 0.000000 0.001944 0.00000 SCALE2 0.000000 0.008566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016512 0.00000