data_4N5U # _entry.id 4N5U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4N5U RCSB RCSB082789 WWPDB D_1000082789 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-006240 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4N5U _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-10 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kumar, P.R.' 1 'Banu, R.' 2 'Bhosle, R.' 3 'Calarese, D.A.' 4 'Celikgil, A.' 5 'Chamala, S.' 6 'Chan, M.K.' 7 'Chowdhury, S.' 8 'Fiser, A.' 9 'Garforth, S.J.' 10 'Glenn, A.S.' 11 'Hillerich, B.' 12 'Khafizov, K.' 13 'Attonito, J.' 14 'Love, J.D.' 15 'Patel, H.' 16 'Patel, R.' 17 'Seidel, R.D.' 18 'Smith, B.' 19 'Stead, M.' 20 'Toro, R.' 21 'Casadevall, A.' 22 'Almo, S.C.' 23 'New York Structural Genomics Research Consortium (NYSGRC)' 24 'Atoms-to-Animals: The Immune Function Network (IFN)' 25 # _citation.id primary _citation.title 'Crystal structure of the 4th FN3 domain of human PTP, receptor F [PSI-NYSGRC-006240]' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kumar, P.R.' 1 primary 'Casadevall, A.' 2 primary 'Almo, S.C.' 3 # _cell.entry_id 4N5U _cell.length_a 36.011 _cell.length_b 39.677 _cell.length_c 68.525 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4N5U _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Receptor-type tyrosine-protein phosphatase F' 12905.143 1 3.1.3.48 ? 'Fibronectin type-III 4 domain, residues 601-705' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Leukocyte common antigen related, LAR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;QDYGGTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLE KWTEYRVWVRAHTDVGPGPESSPVLVRTDEAENLYFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;QDYGGTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLE KWTEYRVWVRAHTDVGPGPESSPVLVRTDEAENLYFQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-006240 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ASP n 1 3 TYR n 1 4 GLY n 1 5 GLY n 1 6 THR n 1 7 ALA n 1 8 GLN n 1 9 SER n 1 10 THR n 1 11 PRO n 1 12 SER n 1 13 ALA n 1 14 PRO n 1 15 PRO n 1 16 GLN n 1 17 LYS n 1 18 VAL n 1 19 MET n 1 20 CYS n 1 21 VAL n 1 22 SER n 1 23 MET n 1 24 GLY n 1 25 SER n 1 26 THR n 1 27 THR n 1 28 VAL n 1 29 ARG n 1 30 VAL n 1 31 SER n 1 32 TRP n 1 33 VAL n 1 34 PRO n 1 35 PRO n 1 36 PRO n 1 37 ALA n 1 38 ASP n 1 39 SER n 1 40 ARG n 1 41 ASN n 1 42 GLY n 1 43 VAL n 1 44 ILE n 1 45 THR n 1 46 GLN n 1 47 TYR n 1 48 SER n 1 49 VAL n 1 50 ALA n 1 51 TYR n 1 52 GLU n 1 53 ALA n 1 54 VAL n 1 55 ASP n 1 56 GLY n 1 57 GLU n 1 58 ASP n 1 59 ARG n 1 60 GLY n 1 61 ARG n 1 62 HIS n 1 63 VAL n 1 64 VAL n 1 65 ASP n 1 66 GLY n 1 67 ILE n 1 68 SER n 1 69 ARG n 1 70 GLU n 1 71 HIS n 1 72 SER n 1 73 SER n 1 74 TRP n 1 75 ASP n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 LEU n 1 80 GLU n 1 81 LYS n 1 82 TRP n 1 83 THR n 1 84 GLU n 1 85 TYR n 1 86 ARG n 1 87 VAL n 1 88 TRP n 1 89 VAL n 1 90 ARG n 1 91 ALA n 1 92 HIS n 1 93 THR n 1 94 ASP n 1 95 VAL n 1 96 GLY n 1 97 PRO n 1 98 GLY n 1 99 PRO n 1 100 GLU n 1 101 SER n 1 102 SER n 1 103 PRO n 1 104 VAL n 1 105 LEU n 1 106 VAL n 1 107 ARG n 1 108 THR n 1 109 ASP n 1 110 GLU n 1 111 ALA n 1 112 GLU n 1 113 ASN n 1 114 LEU n 1 115 TYR n 1 116 PHE n 1 117 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LAR, PTPRF' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'cabbage looper' _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Hi5 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pIEX _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTPRF_HUMAN _struct_ref.pdbx_db_accession P10586 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEY RVWVRAHTDVGPGPESSPVLVRTDE ; _struct_ref.pdbx_align_begin 601 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4N5U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10586 _struct_ref_seq.db_align_beg 601 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 705 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 601 _struct_ref_seq.pdbx_auth_seq_align_end 705 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4N5U GLN A 1 ? UNP P10586 ? ? 'EXPRESSION TAG' 596 1 1 4N5U ASP A 2 ? UNP P10586 ? ? 'EXPRESSION TAG' 597 2 1 4N5U TYR A 3 ? UNP P10586 ? ? 'EXPRESSION TAG' 598 3 1 4N5U GLY A 4 ? UNP P10586 ? ? 'EXPRESSION TAG' 599 4 1 4N5U GLY A 5 ? UNP P10586 ? ? 'EXPRESSION TAG' 600 5 1 4N5U ALA A 111 ? UNP P10586 ? ? 'EXPRESSION TAG' 706 6 1 4N5U GLU A 112 ? UNP P10586 ? ? 'EXPRESSION TAG' 707 7 1 4N5U ASN A 113 ? UNP P10586 ? ? 'EXPRESSION TAG' 708 8 1 4N5U LEU A 114 ? UNP P10586 ? ? 'EXPRESSION TAG' 709 9 1 4N5U TYR A 115 ? UNP P10586 ? ? 'EXPRESSION TAG' 710 10 1 4N5U PHE A 116 ? UNP P10586 ? ? 'EXPRESSION TAG' 711 11 1 4N5U GLN A 117 ? UNP P10586 ? ? 'EXPRESSION TAG' 712 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4N5U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_percent_sol 35.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 10.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Protein (20 mM Hepes, pH 7.5, 150 mM NaCl, 5% glycerol, Reservoir (0.2M Lithium Sulfate, 0.1M CAPS, 1.2M NaH2PO4/0.8M K2HPO4), Cryoprotection (2M Li2SO4), VAPOR DIFFUSION, SITTING DROP, temperature 298K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2013-09-27 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0750 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0750 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4N5U _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.337 _reflns.d_resolution_high 1.456 _reflns.number_obs 16720 _reflns.number_all ? _reflns.percent_possible_obs 94.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.100 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4N5U _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16660 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.337 _refine.ls_d_res_high 1.456 _refine.ls_percent_reflns_obs 93.62 _refine.ls_R_factor_obs 0.1641 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1623 _refine.ls_R_factor_R_free 0.1983 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.02 _refine.ls_number_reflns_R_free 836 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.360 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.7118 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 2EDX _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.14 _refine.pdbx_overall_phase_error 23.31 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 832 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 958 _refine_hist.d_res_high 1.456 _refine_hist.d_res_low 34.337 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 927 'X-RAY DIFFRACTION' ? f_angle_d 1.233 ? ? 1283 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.452 ? ? 340 'X-RAY DIFFRACTION' ? f_chiral_restr 0.076 ? ? 138 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 173 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.4562 1.5475 1850 0.2473 68.00 0.2955 . . 107 . . . . 'X-RAY DIFFRACTION' . 1.5475 1.6669 2601 0.2116 93.00 0.2765 . . 134 . . . . 'X-RAY DIFFRACTION' . 1.6669 1.8347 2763 0.1769 100.00 0.2193 . . 156 . . . . 'X-RAY DIFFRACTION' . 1.8347 2.1001 2825 0.1519 100.00 0.2023 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.1001 2.6458 2827 0.1571 100.00 0.1871 . . 155 . . . . 'X-RAY DIFFRACTION' . 2.6458 34.3461 2958 0.1538 100.00 0.1809 . . 154 . . . . # _struct.entry_id 4N5U _struct.title 'Crystal structure of the 4th FN3 domain of human Protein Tyrosine phosphatase, receptor type F [PSI-NYSGRC-006240]' _struct.pdbx_descriptor 'Receptor-type tyrosine-protein phosphatase F (E.C.3.1.3.48)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4N5U _struct_keywords.text ;internal FN3 domain, Structural genomics, PSI-Biology, New York Structural Genomics Research Consortium (NYSGRC), HYDROLASE, Atoms-to-Animals: The Immune Function Network, IFN ; _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 36 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ARG _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 40 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 631 _struct_conf.end_auth_comp_id ARG _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 635 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 16 ? GLY A 24 ? GLN A 611 GLY A 619 A 2 THR A 27 ? VAL A 33 ? THR A 622 VAL A 628 A 3 SER A 73 ? LEU A 76 ? SER A 668 LEU A 671 B 1 HIS A 62 ? SER A 68 ? HIS A 657 SER A 663 B 2 ILE A 44 ? ALA A 53 ? ILE A 639 ALA A 648 B 3 GLU A 84 ? THR A 93 ? GLU A 679 THR A 688 B 4 PRO A 97 ? GLU A 100 ? PRO A 692 GLU A 695 C 1 HIS A 62 ? SER A 68 ? HIS A 657 SER A 663 C 2 ILE A 44 ? ALA A 53 ? ILE A 639 ALA A 648 C 3 GLU A 84 ? THR A 93 ? GLU A 679 THR A 688 C 4 VAL A 104 ? ARG A 107 ? VAL A 699 ARG A 702 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 21 ? N VAL A 616 O ARG A 29 ? O ARG A 624 A 2 3 N VAL A 30 ? N VAL A 625 O TRP A 74 ? O TRP A 669 B 1 2 O HIS A 62 ? O HIS A 657 N TYR A 51 ? N TYR A 646 B 2 3 N ALA A 50 ? N ALA A 645 O TRP A 88 ? O TRP A 683 B 3 4 N ALA A 91 ? N ALA A 686 O GLY A 98 ? O GLY A 693 C 1 2 O HIS A 62 ? O HIS A 657 N TYR A 51 ? N TYR A 646 C 2 3 N ALA A 50 ? N ALA A 645 O TRP A 88 ? O TRP A 683 C 3 4 N TYR A 85 ? N TYR A 680 O VAL A 106 ? O VAL A 701 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE SO4 A 801' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 802' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ARG A 61 ? ARG A 656 . ? 1_555 ? 2 AC1 9 VAL A 63 ? VAL A 658 . ? 1_555 ? 3 AC1 9 ARG A 90 ? ARG A 685 . ? 1_555 ? 4 AC1 9 SER A 102 ? SER A 697 . ? 4_555 ? 5 AC1 9 HOH D . ? HOH A 915 . ? 1_555 ? 6 AC1 9 HOH D . ? HOH A 923 . ? 1_555 ? 7 AC1 9 HOH D . ? HOH A 969 . ? 1_555 ? 8 AC1 9 HOH D . ? HOH A 978 . ? 1_555 ? 9 AC1 9 HOH D . ? HOH A 1016 . ? 4_555 ? 10 AC2 4 ARG A 90 ? ARG A 685 . ? 1_555 ? 11 AC2 4 HOH D . ? HOH A 927 . ? 1_555 ? 12 AC2 4 HOH D . ? HOH A 941 . ? 1_555 ? 13 AC2 4 HOH D . ? HOH A 1015 . ? 1_555 ? # _atom_sites.entry_id 4N5U _atom_sites.fract_transf_matrix[1][1] 0.027769 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025204 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014593 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 596 ? ? ? A . n A 1 2 ASP 2 597 ? ? ? A . n A 1 3 TYR 3 598 ? ? ? A . n A 1 4 GLY 4 599 ? ? ? A . n A 1 5 GLY 5 600 ? ? ? A . n A 1 6 THR 6 601 ? ? ? A . n A 1 7 ALA 7 602 602 ALA ALA A . n A 1 8 GLN 8 603 603 GLN GLN A . n A 1 9 SER 9 604 604 SER SER A . n A 1 10 THR 10 605 605 THR THR A . n A 1 11 PRO 11 606 606 PRO PRO A . n A 1 12 SER 12 607 607 SER SER A . n A 1 13 ALA 13 608 608 ALA ALA A . n A 1 14 PRO 14 609 609 PRO PRO A . n A 1 15 PRO 15 610 610 PRO PRO A . n A 1 16 GLN 16 611 611 GLN GLN A . n A 1 17 LYS 17 612 612 LYS LYS A . n A 1 18 VAL 18 613 613 VAL VAL A . n A 1 19 MET 19 614 614 MET MET A . n A 1 20 CYS 20 615 615 CYS CYS A . n A 1 21 VAL 21 616 616 VAL VAL A . n A 1 22 SER 22 617 617 SER SER A . n A 1 23 MET 23 618 618 MET MET A . n A 1 24 GLY 24 619 619 GLY GLY A . n A 1 25 SER 25 620 620 SER SER A . n A 1 26 THR 26 621 621 THR THR A . n A 1 27 THR 27 622 622 THR THR A . n A 1 28 VAL 28 623 623 VAL VAL A . n A 1 29 ARG 29 624 624 ARG ARG A . n A 1 30 VAL 30 625 625 VAL VAL A . n A 1 31 SER 31 626 626 SER SER A . n A 1 32 TRP 32 627 627 TRP TRP A . n A 1 33 VAL 33 628 628 VAL VAL A . n A 1 34 PRO 34 629 629 PRO PRO A . n A 1 35 PRO 35 630 630 PRO PRO A . n A 1 36 PRO 36 631 631 PRO PRO A . n A 1 37 ALA 37 632 632 ALA ALA A . n A 1 38 ASP 38 633 633 ASP ASP A . n A 1 39 SER 39 634 634 SER SER A . n A 1 40 ARG 40 635 635 ARG ARG A . n A 1 41 ASN 41 636 636 ASN ASN A . n A 1 42 GLY 42 637 637 GLY GLY A . n A 1 43 VAL 43 638 638 VAL VAL A . n A 1 44 ILE 44 639 639 ILE ILE A . n A 1 45 THR 45 640 640 THR THR A . n A 1 46 GLN 46 641 641 GLN GLN A . n A 1 47 TYR 47 642 642 TYR TYR A . n A 1 48 SER 48 643 643 SER SER A . n A 1 49 VAL 49 644 644 VAL VAL A . n A 1 50 ALA 50 645 645 ALA ALA A . n A 1 51 TYR 51 646 646 TYR TYR A . n A 1 52 GLU 52 647 647 GLU GLU A . n A 1 53 ALA 53 648 648 ALA ALA A . n A 1 54 VAL 54 649 649 VAL VAL A . n A 1 55 ASP 55 650 650 ASP ASP A . n A 1 56 GLY 56 651 651 GLY GLY A . n A 1 57 GLU 57 652 652 GLU GLU A . n A 1 58 ASP 58 653 653 ASP ASP A . n A 1 59 ARG 59 654 654 ARG ARG A . n A 1 60 GLY 60 655 655 GLY GLY A . n A 1 61 ARG 61 656 656 ARG ARG A . n A 1 62 HIS 62 657 657 HIS HIS A . n A 1 63 VAL 63 658 658 VAL VAL A . n A 1 64 VAL 64 659 659 VAL VAL A . n A 1 65 ASP 65 660 660 ASP ASP A . n A 1 66 GLY 66 661 661 GLY GLY A . n A 1 67 ILE 67 662 662 ILE ILE A . n A 1 68 SER 68 663 663 SER SER A . n A 1 69 ARG 69 664 664 ARG ARG A . n A 1 70 GLU 70 665 665 GLU GLU A . n A 1 71 HIS 71 666 666 HIS HIS A . n A 1 72 SER 72 667 667 SER SER A . n A 1 73 SER 73 668 668 SER SER A . n A 1 74 TRP 74 669 669 TRP TRP A . n A 1 75 ASP 75 670 670 ASP ASP A . n A 1 76 LEU 76 671 671 LEU LEU A . n A 1 77 VAL 77 672 672 VAL VAL A . n A 1 78 GLY 78 673 673 GLY GLY A . n A 1 79 LEU 79 674 674 LEU LEU A . n A 1 80 GLU 80 675 675 GLU GLU A . n A 1 81 LYS 81 676 676 LYS LYS A . n A 1 82 TRP 82 677 677 TRP TRP A . n A 1 83 THR 83 678 678 THR THR A . n A 1 84 GLU 84 679 679 GLU GLU A . n A 1 85 TYR 85 680 680 TYR TYR A . n A 1 86 ARG 86 681 681 ARG ARG A . n A 1 87 VAL 87 682 682 VAL VAL A . n A 1 88 TRP 88 683 683 TRP TRP A . n A 1 89 VAL 89 684 684 VAL VAL A . n A 1 90 ARG 90 685 685 ARG ARG A . n A 1 91 ALA 91 686 686 ALA ALA A . n A 1 92 HIS 92 687 687 HIS HIS A . n A 1 93 THR 93 688 688 THR THR A . n A 1 94 ASP 94 689 689 ASP ASP A . n A 1 95 VAL 95 690 690 VAL VAL A . n A 1 96 GLY 96 691 691 GLY GLY A . n A 1 97 PRO 97 692 692 PRO PRO A . n A 1 98 GLY 98 693 693 GLY GLY A . n A 1 99 PRO 99 694 694 PRO PRO A . n A 1 100 GLU 100 695 695 GLU GLU A . n A 1 101 SER 101 696 696 SER SER A . n A 1 102 SER 102 697 697 SER SER A . n A 1 103 PRO 103 698 698 PRO PRO A . n A 1 104 VAL 104 699 699 VAL VAL A . n A 1 105 LEU 105 700 700 LEU LEU A . n A 1 106 VAL 106 701 701 VAL VAL A . n A 1 107 ARG 107 702 702 ARG ARG A . n A 1 108 THR 108 703 703 THR THR A . n A 1 109 ASP 109 704 704 ASP ASP A . n A 1 110 GLU 110 705 705 GLU GLU A . n A 1 111 ALA 111 706 706 ALA ALA A . n A 1 112 GLU 112 707 707 GLU GLU A . n A 1 113 ASN 113 708 708 ASN ASN A . n A 1 114 LEU 114 709 709 LEU LEU A . n A 1 115 TYR 115 710 ? ? ? A . n A 1 116 PHE 116 711 ? ? ? A . n A 1 117 GLN 117 712 ? ? ? A . n # loop_ _pdbx_SG_project.id _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.initial_of_center 1 PSI:Biology 'New York Structural Genomics Research Consortium' NYSGRC 2 PSI:Biology 'Atoms-to-Animals: The Immune Function Network' IFN # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -11.3485 1.8190 -6.6960 0.1016 0.1616 0.0904 0.0088 0.0061 -0.0261 2.3632 7.4280 5.5430 -0.0403 -0.5520 -4.7013 0.0167 0.0485 -0.0087 -0.1584 0.2756 0.4186 0.0890 -0.3562 -0.3195 'X-RAY DIFFRACTION' 2 ? refined -3.9353 3.2363 -1.5440 0.1266 0.1318 0.1199 -0.0123 -0.0079 -0.0158 1.1772 1.6779 7.1859 0.5974 -1.7569 -2.3192 0.0361 -0.1826 -0.0096 0.1267 -0.1297 -0.0911 -0.1887 0.5161 0.1264 'X-RAY DIFFRACTION' 3 ? refined -5.9408 -7.2128 -0.3616 0.1832 0.1305 0.1755 -0.0129 0.0046 -0.0293 1.8726 2.1580 9.9604 0.6578 -2.8334 -3.0578 -0.1014 -0.0306 -0.0514 0.0574 -0.0789 -0.1234 0.5283 0.3220 0.1957 'X-RAY DIFFRACTION' 4 ? refined -9.9926 -0.0022 1.2555 0.0977 0.1436 0.1059 -0.0070 0.0032 -0.0125 1.1666 3.9131 3.0391 1.1498 -0.9187 -2.0273 -0.0489 0.1042 -0.0516 0.1451 0.1791 0.0688 -0.0450 -0.3133 -0.1408 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 602 through 633 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 634 through 664 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 665 through 677 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 678 through 709 ) ; # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 0.1.29 21/08/12 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHENIX 1.8.4_1496 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 PHENIX 1.8.4_1496 ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HH22 A ARG 654 ? ? O A HOH 958 ? ? 1.32 2 1 HH12 A ARG 656 ? ? O3 A SO4 801 ? ? 1.59 3 1 O A HOH 990 ? ? O A HOH 998 ? ? 1.83 4 1 NH2 A ARG 654 ? ? O A HOH 958 ? ? 1.90 5 1 OD1 A ASP 704 ? A O A HOH 998 ? ? 2.04 6 1 O A HOH 985 ? ? O A HOH 987 ? ? 2.06 7 1 OG A SER 617 ? B O A HOH 990 ? ? 2.18 8 1 OG A SER 697 ? A O A HOH 1016 ? ? 2.19 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 596 ? A GLN 1 2 1 Y 1 A ASP 597 ? A ASP 2 3 1 Y 1 A TYR 598 ? A TYR 3 4 1 Y 1 A GLY 599 ? A GLY 4 5 1 Y 1 A GLY 600 ? A GLY 5 6 1 Y 1 A THR 601 ? A THR 6 7 1 Y 1 A TYR 710 ? A TYR 115 8 1 Y 1 A PHE 711 ? A PHE 116 9 1 Y 1 A GLN 712 ? A GLN 117 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 801 1 SO4 SO4 A . C 2 SO4 1 802 2 SO4 SO4 A . D 3 HOH 1 901 1 HOH HOH A . D 3 HOH 2 902 2 HOH HOH A . D 3 HOH 3 903 3 HOH HOH A . D 3 HOH 4 904 4 HOH HOH A . D 3 HOH 5 905 5 HOH HOH A . D 3 HOH 6 906 6 HOH HOH A . D 3 HOH 7 907 7 HOH HOH A . D 3 HOH 8 908 8 HOH HOH A . D 3 HOH 9 909 9 HOH HOH A . D 3 HOH 10 910 10 HOH HOH A . D 3 HOH 11 911 11 HOH HOH A . D 3 HOH 12 912 12 HOH HOH A . D 3 HOH 13 913 13 HOH HOH A . D 3 HOH 14 914 14 HOH HOH A . D 3 HOH 15 915 15 HOH HOH A . D 3 HOH 16 916 16 HOH HOH A . D 3 HOH 17 917 17 HOH HOH A . D 3 HOH 18 918 18 HOH HOH A . D 3 HOH 19 919 19 HOH HOH A . D 3 HOH 20 920 20 HOH HOH A . D 3 HOH 21 921 21 HOH HOH A . D 3 HOH 22 922 22 HOH HOH A . D 3 HOH 23 923 23 HOH HOH A . D 3 HOH 24 924 24 HOH HOH A . D 3 HOH 25 925 25 HOH HOH A . D 3 HOH 26 926 26 HOH HOH A . D 3 HOH 27 927 27 HOH HOH A . D 3 HOH 28 928 28 HOH HOH A . D 3 HOH 29 929 29 HOH HOH A . D 3 HOH 30 930 30 HOH HOH A . D 3 HOH 31 931 31 HOH HOH A . D 3 HOH 32 932 32 HOH HOH A . D 3 HOH 33 933 33 HOH HOH A . D 3 HOH 34 934 34 HOH HOH A . D 3 HOH 35 935 35 HOH HOH A . D 3 HOH 36 936 36 HOH HOH A . D 3 HOH 37 937 37 HOH HOH A . D 3 HOH 38 938 38 HOH HOH A . D 3 HOH 39 939 39 HOH HOH A . D 3 HOH 40 940 40 HOH HOH A . D 3 HOH 41 941 41 HOH HOH A . D 3 HOH 42 942 42 HOH HOH A . D 3 HOH 43 943 43 HOH HOH A . D 3 HOH 44 944 44 HOH HOH A . D 3 HOH 45 945 45 HOH HOH A . D 3 HOH 46 946 46 HOH HOH A . D 3 HOH 47 947 47 HOH HOH A . D 3 HOH 48 948 48 HOH HOH A . D 3 HOH 49 949 49 HOH HOH A . D 3 HOH 50 950 50 HOH HOH A . D 3 HOH 51 951 51 HOH HOH A . D 3 HOH 52 952 52 HOH HOH A . D 3 HOH 53 953 53 HOH HOH A . D 3 HOH 54 954 54 HOH HOH A . D 3 HOH 55 955 55 HOH HOH A . D 3 HOH 56 956 56 HOH HOH A . D 3 HOH 57 957 57 HOH HOH A . D 3 HOH 58 958 58 HOH HOH A . D 3 HOH 59 959 59 HOH HOH A . D 3 HOH 60 960 60 HOH HOH A . D 3 HOH 61 961 61 HOH HOH A . D 3 HOH 62 962 62 HOH HOH A . D 3 HOH 63 963 63 HOH HOH A . D 3 HOH 64 964 64 HOH HOH A . D 3 HOH 65 965 65 HOH HOH A . D 3 HOH 66 966 66 HOH HOH A . D 3 HOH 67 967 67 HOH HOH A . D 3 HOH 68 968 68 HOH HOH A . D 3 HOH 69 969 69 HOH HOH A . D 3 HOH 70 970 70 HOH HOH A . D 3 HOH 71 971 71 HOH HOH A . D 3 HOH 72 972 72 HOH HOH A . D 3 HOH 73 973 73 HOH HOH A . D 3 HOH 74 974 74 HOH HOH A . D 3 HOH 75 975 75 HOH HOH A . D 3 HOH 76 976 76 HOH HOH A . D 3 HOH 77 977 77 HOH HOH A . D 3 HOH 78 978 78 HOH HOH A . D 3 HOH 79 979 79 HOH HOH A . D 3 HOH 80 980 80 HOH HOH A . D 3 HOH 81 981 81 HOH HOH A . D 3 HOH 82 982 82 HOH HOH A . D 3 HOH 83 983 83 HOH HOH A . D 3 HOH 84 984 84 HOH HOH A . D 3 HOH 85 985 85 HOH HOH A . D 3 HOH 86 986 86 HOH HOH A . D 3 HOH 87 987 87 HOH HOH A . D 3 HOH 88 988 88 HOH HOH A . D 3 HOH 89 989 89 HOH HOH A . D 3 HOH 90 990 90 HOH HOH A . D 3 HOH 91 991 91 HOH HOH A . D 3 HOH 92 992 92 HOH HOH A . D 3 HOH 93 993 93 HOH HOH A . D 3 HOH 94 994 94 HOH HOH A . D 3 HOH 95 995 95 HOH HOH A . D 3 HOH 96 996 96 HOH HOH A . D 3 HOH 97 997 97 HOH HOH A . D 3 HOH 98 998 98 HOH HOH A . D 3 HOH 99 999 99 HOH HOH A . D 3 HOH 100 1000 100 HOH HOH A . D 3 HOH 101 1001 101 HOH HOH A . D 3 HOH 102 1002 102 HOH HOH A . D 3 HOH 103 1003 103 HOH HOH A . D 3 HOH 104 1004 104 HOH HOH A . D 3 HOH 105 1005 105 HOH HOH A . D 3 HOH 106 1006 106 HOH HOH A . D 3 HOH 107 1007 107 HOH HOH A . D 3 HOH 108 1008 108 HOH HOH A . D 3 HOH 109 1009 109 HOH HOH A . D 3 HOH 110 1010 110 HOH HOH A . D 3 HOH 111 1011 111 HOH HOH A . D 3 HOH 112 1012 112 HOH HOH A . D 3 HOH 113 1013 113 HOH HOH A . D 3 HOH 114 1014 114 HOH HOH A . D 3 HOH 115 1015 115 HOH HOH A . D 3 HOH 116 1016 116 HOH HOH A . #