HEADER OXIDOREDUCTASE 11-OCT-13 4N65 TITLE CRYSTAL STRUCTURE OF PAAZOR1 BOUND TO ANTHRAQUINONE-2-SULPHONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN-DEPENDENT NADH-AZOREDUCTASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AZO-DYE REDUCTASE 1, FMN-DEPENDENT NADH-AZO COMPOUND COMPND 5 OXIDOREDUCTASE 1; COMPND 6 EC: 1.7.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692/ PAO1/ 1C/ PRS 101/ LMG 12228; SOURCE 5 GENE: AZOR1, PA0785; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS AZOREDUCTASE, QUINONE, NAD(P)H QUINONE OXIDOREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.RYAN,E.KAPLAN,V.CRESCENTE,E.LOWE,G.M.PRESTON,E.SIM REVDAT 3 28-FEB-24 4N65 1 REMARK REVDAT 2 18-JUN-14 4N65 1 JRNL REVDAT 1 11-JUN-14 4N65 0 JRNL AUTH A.RYAN,E.KAPLAN,J.C.NEBEL,E.POLYCARPOU,V.CRESCENTE,E.LOWE, JRNL AUTH 2 G.M.PRESTON,E.SIM JRNL TITL IDENTIFICATION OF NAD(P)H QUINONE OXIDOREDUCTASE ACTIVITY IN JRNL TITL 2 AZOREDUCTASES FROM P. AERUGINOSA: AZOREDUCTASES AND NAD(P)H JRNL TITL 3 QUINONE OXIDOREDUCTASES BELONG TO THE SAME FMN-DEPENDENT JRNL TITL 4 SUPERFAMILY OF ENZYMES. JRNL REF PLOS ONE V. 9 98551 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24915188 JRNL DOI 10.1371/JOURNAL.PONE.0098551 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 37808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3549 - 4.3739 0.98 2769 144 0.2097 0.2245 REMARK 3 2 4.3739 - 3.4724 1.00 2678 154 0.1499 0.1553 REMARK 3 3 3.4724 - 3.0337 1.00 2633 134 0.1469 0.1444 REMARK 3 4 3.0337 - 2.7564 1.00 2663 155 0.1533 0.1893 REMARK 3 5 2.7564 - 2.5589 1.00 2614 139 0.1458 0.1933 REMARK 3 6 2.5589 - 2.4080 1.00 2628 138 0.1497 0.1996 REMARK 3 7 2.4080 - 2.2874 1.00 2620 127 0.1448 0.1880 REMARK 3 8 2.2874 - 2.1879 1.00 2634 119 0.1432 0.1730 REMARK 3 9 2.1879 - 2.1037 1.00 2575 162 0.1423 0.1595 REMARK 3 10 2.1037 - 2.0311 1.00 2640 118 0.1458 0.1853 REMARK 3 11 2.0311 - 1.9676 1.00 2614 134 0.1499 0.1908 REMARK 3 12 1.9676 - 1.9113 1.00 2579 144 0.1664 0.2131 REMARK 3 13 1.9113 - 1.8610 0.99 2579 133 0.1988 0.2276 REMARK 3 14 1.8610 - 1.8160 0.65 1687 94 0.2245 0.2848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3293 REMARK 3 ANGLE : 1.315 4483 REMARK 3 CHIRALITY : 0.082 484 REMARK 3 PLANARITY : 0.006 584 REMARK 3 DIHEDRAL : 14.073 1197 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.4137 13.7279 6.6345 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.1278 REMARK 3 T33: 0.1395 T12: 0.0015 REMARK 3 T13: -0.0058 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.0157 L22: 1.3379 REMARK 3 L33: 0.8268 L12: 0.3730 REMARK 3 L13: 0.2170 L23: 0.0207 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: -0.0356 S13: -0.0756 REMARK 3 S21: 0.0118 S22: -0.0438 S23: -0.2783 REMARK 3 S31: 0.0624 S32: 0.0450 S33: -0.0076 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.815 REMARK 200 RESOLUTION RANGE LOW (A) : 70.919 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULPHATE, 0.1 M HEPES REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.46000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.92000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.92000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 546 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 127 REMARK 465 VAL A 128 REMARK 465 GLY A 191 REMARK 465 ARG A 192 REMARK 465 MET B 1 REMARK 465 LEU B 124 REMARK 465 ASP B 125 REMARK 465 ASN B 126 REMARK 465 GLY B 127 REMARK 465 VAL B 128 REMARK 465 ALA B 129 REMARK 465 GLU B 187 REMARK 465 GLU B 188 REMARK 465 SER B 189 REMARK 465 GLY B 190 REMARK 465 GLY B 191 REMARK 465 ARG B 192 REMARK 465 SER B 193 REMARK 465 PHE B 194 REMARK 465 GLU B 195 REMARK 465 SER B 211 REMARK 465 ALA B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 GLU A 65 CD OE1 OE2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 GLN A 130 CD OE1 NE2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 SER A 189 OG REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 ARG B 15 CD NE CZ NH1 NH2 REMARK 470 PHE B 122 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 130 CG CD OE1 NE2 REMARK 470 ARG B 132 CD NE CZ NH1 NH2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 ASP B 196 CG OD1 OD2 REMARK 470 ASP B 199 CG OD1 OD2 REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 470 ARG B 204 CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS B 149 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 162 HD1 HIS B 162 1.34 REMARK 500 O HOH B 538 O HOH B 539 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 460 O HOH B 460 6555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 67 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 -149.77 -138.73 REMARK 500 VAL A 118 -52.86 -124.63 REMARK 500 ALA A 163 -90.20 -100.22 REMARK 500 SER B 101 -149.15 -141.96 REMARK 500 VAL B 118 -56.99 -127.24 REMARK 500 ALA B 163 -89.04 -97.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AQN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V9C RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO METHYL RED REMARK 900 RELATED ID: 3KEG RELATED DB: PDB REMARK 900 Y131F MUTANT OF PAAZOR1 BOUND TO METHYL RED REMARK 900 RELATED ID: 3LT5 RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO BALSALAZIDE REMARK 900 RELATED ID: 3R6W RELATED DB: PDB REMARK 900 SAME PROTEIN BOUND TO NITROFURAZONE REMARK 900 RELATED ID: 4N9Q RELATED DB: PDB DBREF 4N65 A 1 212 UNP Q9I5F3 AZOR1_PSEAE 1 212 DBREF 4N65 B 1 212 UNP Q9I5F3 AZOR1_PSEAE 1 212 SEQRES 1 A 212 MET SER ARG ILE LEU ALA VAL HIS ALA SER PRO ARG GLY SEQRES 2 A 212 GLU ARG SER GLN SER ARG ARG LEU ALA GLU VAL PHE LEU SEQRES 3 A 212 ALA ALA TYR ARG GLU ALA HIS PRO GLN ALA ARG VAL ALA SEQRES 4 A 212 ARG ARG GLU VAL GLY ARG VAL PRO LEU PRO ALA VAL THR SEQRES 5 A 212 GLU ALA PHE VAL ALA ALA ALA PHE HIS PRO GLN PRO GLU SEQRES 6 A 212 GLN ARG SER LEU ALA MET GLN ALA ASP LEU ALA LEU SER SEQRES 7 A 212 ASP GLN LEU VAL GLY GLU LEU PHE ASP SER ASP LEU LEU SEQRES 8 A 212 VAL ILE SER THR PRO MET TYR ASN PHE SER VAL PRO SER SEQRES 9 A 212 GLY LEU LYS ALA TRP ILE ASP GLN ILE VAL ARG LEU GLY SEQRES 10 A 212 VAL THR PHE ASP PHE VAL LEU ASP ASN GLY VAL ALA GLN SEQRES 11 A 212 TYR ARG PRO LEU LEU ARG GLY LYS ARG ALA LEU ILE VAL SEQRES 12 A 212 THR SER ARG GLY GLY HIS GLY PHE GLY PRO GLY GLY GLU SEQRES 13 A 212 ASN GLN ALA MET ASN HIS ALA ASP PRO TRP LEU ARG THR SEQRES 14 A 212 ALA LEU GLY PHE ILE GLY ILE ASP GLU VAL THR VAL VAL SEQRES 15 A 212 ALA ALA GLU GLY GLU GLU SER GLY GLY ARG SER PHE GLU SEQRES 16 A 212 ASP SER CYS ASP GLU ALA GLU GLN ARG LEU LEU ALA LEU SEQRES 17 A 212 ALA ARG SER ALA SEQRES 1 B 212 MET SER ARG ILE LEU ALA VAL HIS ALA SER PRO ARG GLY SEQRES 2 B 212 GLU ARG SER GLN SER ARG ARG LEU ALA GLU VAL PHE LEU SEQRES 3 B 212 ALA ALA TYR ARG GLU ALA HIS PRO GLN ALA ARG VAL ALA SEQRES 4 B 212 ARG ARG GLU VAL GLY ARG VAL PRO LEU PRO ALA VAL THR SEQRES 5 B 212 GLU ALA PHE VAL ALA ALA ALA PHE HIS PRO GLN PRO GLU SEQRES 6 B 212 GLN ARG SER LEU ALA MET GLN ALA ASP LEU ALA LEU SER SEQRES 7 B 212 ASP GLN LEU VAL GLY GLU LEU PHE ASP SER ASP LEU LEU SEQRES 8 B 212 VAL ILE SER THR PRO MET TYR ASN PHE SER VAL PRO SER SEQRES 9 B 212 GLY LEU LYS ALA TRP ILE ASP GLN ILE VAL ARG LEU GLY SEQRES 10 B 212 VAL THR PHE ASP PHE VAL LEU ASP ASN GLY VAL ALA GLN SEQRES 11 B 212 TYR ARG PRO LEU LEU ARG GLY LYS ARG ALA LEU ILE VAL SEQRES 12 B 212 THR SER ARG GLY GLY HIS GLY PHE GLY PRO GLY GLY GLU SEQRES 13 B 212 ASN GLN ALA MET ASN HIS ALA ASP PRO TRP LEU ARG THR SEQRES 14 B 212 ALA LEU GLY PHE ILE GLY ILE ASP GLU VAL THR VAL VAL SEQRES 15 B 212 ALA ALA GLU GLY GLU GLU SER GLY GLY ARG SER PHE GLU SEQRES 16 B 212 ASP SER CYS ASP GLU ALA GLU GLN ARG LEU LEU ALA LEU SEQRES 17 B 212 ALA ARG SER ALA HET FMN A 301 50 HET AQN A 302 28 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET FMN B 301 50 HET GOL B 302 14 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM AQN 9,10-DIOXO-9,10-DIHYDROANTHRACENE-2-SULFONIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 AQN C14 H8 O5 S FORMUL 5 SO4 3(O4 S 2-) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *278(H2 O) HELIX 1 1 SER A 16 HIS A 33 1 18 HELIX 2 2 THR A 52 PHE A 60 1 9 HELIX 3 3 GLN A 63 ARG A 67 5 5 HELIX 4 4 SER A 68 ASP A 87 1 20 HELIX 5 5 PRO A 103 VAL A 114 1 12 HELIX 6 6 ASN A 157 ASN A 161 5 5 HELIX 7 7 ALA A 163 ILE A 174 1 12 HELIX 8 8 PHE A 194 ALA A 212 1 19 HELIX 9 9 SER B 16 HIS B 33 1 18 HELIX 10 10 THR B 52 PHE B 60 1 9 HELIX 11 11 GLN B 63 ARG B 67 5 5 HELIX 12 12 SER B 68 LEU B 75 1 8 HELIX 13 13 LEU B 75 ASP B 87 1 13 HELIX 14 14 PRO B 103 VAL B 114 1 12 HELIX 15 15 ASN B 157 ASN B 161 5 5 HELIX 16 16 ALA B 163 GLY B 175 1 13 HELIX 17 17 SER B 197 ARG B 210 1 14 SHEET 1 A 5 ARG A 37 GLU A 42 0 SHEET 2 A 5 ARG A 3 HIS A 8 1 N ALA A 6 O ALA A 39 SHEET 3 A 5 LEU A 90 PRO A 96 1 O VAL A 92 N VAL A 7 SHEET 4 A 5 ARG A 139 ARG A 146 1 O VAL A 143 N ILE A 93 SHEET 5 A 5 VAL A 179 GLU A 185 1 O THR A 180 N ILE A 142 SHEET 1 B 2 PHE A 120 VAL A 123 0 SHEET 2 B 2 GLN A 130 PRO A 133 -1 O GLN A 130 N VAL A 123 SHEET 1 C 5 ARG B 37 GLU B 42 0 SHEET 2 C 5 ARG B 3 HIS B 8 1 N ILE B 4 O ARG B 37 SHEET 3 C 5 LEU B 90 PRO B 96 1 O VAL B 92 N LEU B 5 SHEET 4 C 5 ARG B 139 ARG B 146 1 O VAL B 143 N ILE B 93 SHEET 5 C 5 VAL B 179 GLU B 185 1 O THR B 180 N ILE B 142 SHEET 1 D 2 PHE B 120 ASP B 121 0 SHEET 2 D 2 ARG B 132 PRO B 133 -1 O ARG B 132 N ASP B 121 SITE 1 AC1 20 SER A 10 ARG A 12 SER A 16 GLN A 17 SITE 2 AC1 20 SER A 18 PRO A 96 MET A 97 TYR A 98 SITE 3 AC1 20 ASN A 99 PHE A 100 SER A 145 ARG A 146 SITE 4 AC1 20 GLY A 147 GLY A 148 PHE A 151 GLU A 187 SITE 5 AC1 20 GLU A 188 HOH A 407 HOH A 415 VAL B 56 SITE 1 AC2 8 TYR A 131 PHE A 173 HOH A 514 HOH A 531 SITE 2 AC2 8 PHE B 100 GLY B 147 GLY B 148 FMN B 301 SITE 1 AC3 2 ARG A 30 ARG A 40 SITE 1 AC4 4 ARG A 139 LEU A 208 ALA A 212 HOH A 459 SITE 1 AC5 8 LEU A 48 ALA A 50 SER A 104 GLY A 105 SITE 2 AC5 8 HOH A 440 LEU B 48 SER B 104 GLY B 105 SITE 1 AC6 21 PHE A 60 AQN A 302 SER B 10 ARG B 12 SITE 2 AC6 21 SER B 16 GLN B 17 SER B 18 PRO B 96 SITE 3 AC6 21 MET B 97 TYR B 98 ASN B 99 PHE B 100 SITE 4 AC6 21 SER B 145 ARG B 146 GLY B 147 GLY B 148 SITE 5 AC6 21 PHE B 151 HOH B 414 HOH B 424 HOH B 487 SITE 6 AC6 21 HOH B 516 SITE 1 AC7 9 ALA B 50 VAL B 51 THR B 52 PHE B 55 SITE 2 AC7 9 ASP B 74 GLN B 112 HOH B 404 HOH B 412 SITE 3 AC7 9 HOH B 437 CRYST1 81.890 81.890 109.380 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012212 0.007050 0.000000 0.00000 SCALE2 0.000000 0.014101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009142 0.00000