HEADER HYDROLASE/HYDROLASE INHIBITOR 11-OCT-13 4N66 TITLE THERMOLYSIN IN COMPLEX WITH UBTLN37 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: MATURE FORM (UNP RESIDUES 233-548); COMPND 5 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 6 EC: 3.4.24.27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427 KEYWDS PROTEASE, METALLOPROTEASE, HYDROLYSIS OF PEPTIDE BONDS, 2- KEYWDS 2 PHOSPHORAMIDON, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.KRIMMER,A.HEINE,G.KLEBE REVDAT 3 20-SEP-23 4N66 1 REMARK LINK REVDAT 2 16-APR-14 4N66 1 JRNL REVDAT 1 02-APR-14 4N66 0 JRNL AUTH S.G.KRIMMER,M.BETZ,A.HEINE,G.KLEBE JRNL TITL METHYL, ETHYL, PROPYL, BUTYL: FUTILE BUT NOT FOR WATER, AS JRNL TITL 2 THE CORRELATION OF STRUCTURE AND THERMODYNAMIC SIGNATURE JRNL TITL 3 SHOWS IN A CONGENERIC SERIES OF THERMOLYSIN INHIBITORS. JRNL REF CHEMMEDCHEM V. 4 833 2014 JRNL REFN ISSN 1860-7179 JRNL PMID 24623396 JRNL DOI 10.1002/CMDC.201400013 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1492) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 59267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.114 REMARK 3 R VALUE (WORKING SET) : 0.112 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1696 - 3.9725 0.99 2941 143 0.1412 0.1675 REMARK 3 2 3.9725 - 3.1535 1.00 2811 120 0.1200 0.1450 REMARK 3 3 3.1535 - 2.7550 1.00 2732 145 0.1200 0.1320 REMARK 3 4 2.7550 - 2.5032 1.00 2719 147 0.1152 0.1490 REMARK 3 5 2.5032 - 2.3238 1.00 2697 156 0.1139 0.1380 REMARK 3 6 2.3238 - 2.1868 1.00 2660 164 0.1024 0.1452 REMARK 3 7 2.1868 - 2.0773 1.00 2709 130 0.0997 0.1424 REMARK 3 8 2.0773 - 1.9869 1.00 2696 138 0.0996 0.1198 REMARK 3 9 1.9869 - 1.9104 1.00 2680 126 0.0979 0.1406 REMARK 3 10 1.9104 - 1.8445 1.00 2641 156 0.0993 0.1251 REMARK 3 11 1.8445 - 1.7868 1.00 2686 133 0.0886 0.1313 REMARK 3 12 1.7868 - 1.7357 1.00 2653 130 0.0900 0.1239 REMARK 3 13 1.7357 - 1.6900 1.00 2668 156 0.0942 0.1377 REMARK 3 14 1.6900 - 1.6488 1.00 2625 136 0.0969 0.1453 REMARK 3 15 1.6488 - 1.6113 1.00 2682 116 0.0967 0.1498 REMARK 3 16 1.6113 - 1.5770 1.00 2649 150 0.1022 0.1572 REMARK 3 17 1.5770 - 1.5455 1.00 2628 141 0.1022 0.1593 REMARK 3 18 1.5455 - 1.5163 1.00 2652 147 0.1047 0.1482 REMARK 3 19 1.5163 - 1.4892 1.00 2632 135 0.1087 0.1602 REMARK 3 20 1.4892 - 1.4640 1.00 2601 172 0.1185 0.1587 REMARK 3 21 1.4640 - 1.4404 0.96 2517 147 0.1433 0.1948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2672 REMARK 3 ANGLE : 1.068 3652 REMARK 3 CHIRALITY : 0.073 380 REMARK 3 PLANARITY : 0.005 484 REMARK 3 DIHEDRAL : 13.115 950 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 39.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44500 REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 8TLN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS/HCL, 1.9 M CSCL, 50% DMSO, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.36800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.73600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.05200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.42000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.68400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.36800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.73600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.42000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.05200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.68400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 638 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 734 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 983 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 182 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR E 26 -59.12 69.67 REMARK 500 SER E 92 -173.48 60.80 REMARK 500 SER E 107 -162.84 60.53 REMARK 500 ASN E 111 54.67 -93.96 REMARK 500 THR E 152 -98.55 -120.70 REMARK 500 ASN E 159 -140.82 51.51 REMARK 500 ASN E 159 -140.82 55.69 REMARK 500 THR E 194 75.82 41.94 REMARK 500 ILE E 232 -60.13 -105.15 REMARK 500 TYR E 274 -39.72 -130.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 52.7 REMARK 620 3 ASP E 59 OD1 122.7 70.4 REMARK 620 4 GLN E 61 O 95.2 89.5 89.8 REMARK 620 5 GLN E 61 O 92.7 86.7 89.9 3.0 REMARK 620 6 HOH E 619 O 81.3 132.5 155.5 82.8 83.8 REMARK 620 7 HOH E 620 O 84.8 88.5 87.9 177.4 175.2 99.8 REMARK 620 8 HOH E 627 O 157.6 147.0 77.0 95.4 98.3 80.5 85.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 77.6 REMARK 620 3 GLU E 177 OE2 127.1 49.7 REMARK 620 4 ASP E 185 OD1 160.0 122.4 72.7 REMARK 620 5 GLU E 187 O 84.0 145.9 141.7 78.9 REMARK 620 6 GLU E 190 OE2 99.2 83.2 73.8 83.6 128.3 REMARK 620 7 GLU E 190 OE1 84.2 127.9 122.3 82.0 77.4 52.0 REMARK 620 8 HOH E 601 O 97.5 79.4 78.9 88.0 74.8 152.7 151.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 102.9 REMARK 620 3 GLU E 166 OE2 125.5 96.2 REMARK 620 4 GLU E 166 OE1 82.1 129.6 47.9 REMARK 620 5 2GZ E 513 O14 111.8 126.6 95.3 95.2 REMARK 620 6 2GZ E 513 O15 101.1 80.2 132.4 148.9 54.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 93.0 REMARK 620 3 ASP E 185 OD2 88.8 91.1 REMARK 620 4 GLU E 190 OE2 83.0 171.7 81.6 REMARK 620 5 HOH E 645 O 171.9 92.6 96.8 92.1 REMARK 620 6 HOH E 658 O 87.7 93.2 174.6 93.9 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 77.3 REMARK 620 3 THR E 194 OG1 76.4 70.8 REMARK 620 4 ILE E 197 O 154.9 79.5 104.4 REMARK 620 5 ASP E 200 OD1 121.4 133.4 73.4 81.7 REMARK 620 6 HOH E 628 O 82.4 152.5 122.1 115.9 73.4 REMARK 620 7 HOH E 684 O 87.4 83.6 152.1 80.9 134.4 77.0 REMARK 620 N 1 2 3 4 5 6 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: P-((((BENZYLOXY)CARBONYL)AMINO)METHYL)-N-((S)-4- REMARK 630 METHYL-1-(NEOPENTYLAMINO)-1-OXOPENTAN-2-YL)PHOSPHONAMIDIC ACID REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 2GZ E 513 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ PGL LEU NPT REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS E 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2GZ E 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MTW RELATED DB: PDB REMARK 900 RELATED ID: 4MWP RELATED DB: PDB REMARK 900 RELATED ID: 4MXJ RELATED DB: PDB REMARK 900 RELATED ID: 4MZN RELATED DB: PDB REMARK 900 RELATED ID: 4N4E RELATED DB: PDB REMARK 900 RELATED ID: 4N5P RELATED DB: PDB REMARK 900 RELATED ID: 4OI5 RELATED DB: PDB DBREF 4N66 E 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET ZN E 501 1 HET CA E 503 1 HET CA E 504 1 HET CA E 502 1 HET CA E 505 1 HET DMS E 506 4 HET DMS E 507 4 HET DMS E 508 4 HET DMS E 509 4 HET GOL E 510 6 HET GOL E 511 6 HET GOL E 512 6 HET 2GZ E 513 33 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM 2GZ P-((((BENZYLOXY)CARBONYL)AMINO)METHYL)-N-((S)-4-METHYL- HETNAM 2 2GZ 1-(NEOPENTYLAMINO)-1-OXOPENTAN-2-YL)PHOSPHONAMIDIC HETNAM 3 2GZ ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 2GZ N~2~-[(S)-({[(BENZYLOXY)CARBONYL]AMINO}METHYL) HETSYN 2 2GZ (HYDROXY)PHOSPHORYL]-N-(2,2-DIMETHYLPROPYL)-L- HETSYN 3 2GZ LEUCINAMIDE FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 DMS 4(C2 H6 O S) FORMUL 11 GOL 3(C3 H8 O3) FORMUL 14 2GZ C20 H34 N3 O5 P FORMUL 15 HOH *403(H2 O) HELIX 1 1 ALA E 64 TYR E 66 5 3 HELIX 2 2 ASP E 67 ASN E 89 1 23 HELIX 3 3 PRO E 132 GLY E 135 5 4 HELIX 4 4 GLY E 136 THR E 152 1 17 HELIX 5 5 GLN E 158 ASN E 181 1 24 HELIX 6 6 ASP E 207 GLY E 212 5 6 HELIX 7 7 HIS E 216 ARG E 220 5 5 HELIX 8 8 THR E 224 VAL E 230 1 7 HELIX 9 9 ASN E 233 GLY E 247 1 15 HELIX 10 10 GLY E 259 TYR E 274 1 16 HELIX 11 11 ASN E 280 GLY E 297 1 18 HELIX 12 12 SER E 300 VAL E 313 1 14 SHEET 1 A 5 ALA E 56 ASP E 57 0 SHEET 2 A 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 A 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 A 5 THR E 4 ARG E 11 -1 N THR E 4 O TYR E 24 SHEET 5 A 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 B 3 GLN E 31 ASP E 32 0 SHEET 2 B 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 B 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 C 5 GLN E 31 ASP E 32 0 SHEET 2 C 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 C 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 C 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 C 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 D 2 GLU E 187 ILE E 188 0 SHEET 2 D 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 E 2 GLY E 248 HIS E 250 0 SHEET 2 E 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 503 1555 1555 2.38 LINK OD2 ASP E 57 CA CA E 503 1555 1555 2.54 LINK OD1 ASP E 59 CA CA E 503 1555 1555 2.35 LINK O AGLN E 61 CA CA E 503 1555 1555 2.27 LINK O BGLN E 61 CA CA E 503 1555 1555 2.28 LINK OD2 ASP E 138 CA CA E 502 1555 1555 2.37 LINK NE2 HIS E 142 ZN ZN E 501 1555 1555 2.02 LINK NE2 HIS E 146 ZN ZN E 501 1555 1555 2.02 LINK OE2 GLU E 166 ZN ZN E 501 1555 1555 1.96 LINK OE1 GLU E 166 ZN ZN E 501 1555 1555 2.95 LINK OE1 GLU E 177 CA CA E 502 1555 1555 2.47 LINK OE2 GLU E 177 CA CA E 502 1555 1555 2.71 LINK OE2 GLU E 177 CA CA E 505 1555 1555 2.41 LINK O ASN E 183 CA CA E 505 1555 1555 2.29 LINK OD1 ASP E 185 CA CA E 502 1555 1555 2.45 LINK OD2 ASP E 185 CA CA E 505 1555 1555 2.38 LINK O GLU E 187 CA CA E 502 1555 1555 2.34 LINK OE2 GLU E 190 CA CA E 502 1555 1555 2.49 LINK OE1 GLU E 190 CA CA E 502 1555 1555 2.50 LINK OE2 GLU E 190 CA CA E 505 1555 1555 2.30 LINK O TYR E 193 CA CA E 504 1555 1555 2.34 LINK O THR E 194 CA CA E 504 1555 1555 2.37 LINK OG1 THR E 194 CA CA E 504 1555 1555 2.42 LINK O ILE E 197 CA CA E 504 1555 1555 2.27 LINK OD1 ASP E 200 CA CA E 504 1555 1555 2.38 LINK ZN ZN E 501 O14 2GZ E 513 1555 1555 2.00 LINK ZN ZN E 501 O15 2GZ E 513 1555 1555 3.16 LINK CA CA E 502 O HOH E 601 1555 1555 2.43 LINK CA CA E 503 O HOH E 619 1555 1555 2.42 LINK CA CA E 503 O HOH E 620 1555 1555 2.34 LINK CA CA E 503 O HOH E 627 1555 1555 2.36 LINK CA CA E 504 O HOH E 628 1555 1555 2.40 LINK CA CA E 504 O HOH E 684 1555 1555 2.40 LINK CA CA E 505 O HOH E 645 1555 1555 2.35 LINK CA CA E 505 O HOH E 658 1555 1555 2.39 CISPEP 1 LEU E 50 PRO E 51 0 5.28 SITE 1 AC1 4 HIS E 142 HIS E 146 GLU E 166 2GZ E 513 SITE 1 AC2 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC2 6 GLU E 190 HOH E 601 SITE 1 AC3 6 ASP E 57 ASP E 59 GLN E 61 HOH E 619 SITE 2 AC3 6 HOH E 620 HOH E 627 SITE 1 AC4 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 6 HOH E 628 HOH E 684 SITE 1 AC5 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC5 6 HOH E 645 HOH E 658 SITE 1 AC6 5 ILE E 1 THR E 2 GLY E 3 GLN E 31 SITE 2 AC6 5 ASN E 33 SITE 1 AC7 5 TYR E 66 HIS E 216 SER E 218 TYR E 251 SITE 2 AC7 5 HOH E 663 SITE 1 AC8 4 TYR E 110 ASN E 112 PHE E 114 2GZ E 513 SITE 1 AC9 5 GLY E 95 PRO E 184 TRP E 186 HOH E 655 SITE 2 AC9 5 HOH E 783 SITE 1 BC1 8 PHE E 114 TRP E 115 HIS E 146 TYR E 157 SITE 2 BC1 8 2GZ E 513 HOH E 609 HOH E 646 HOH E 648 SITE 1 BC2 6 GLY E 109 TYR E 110 ASN E 111 ASN E 112 SITE 2 BC2 6 GLN E 158 HOH E 894 SITE 1 BC3 11 GLY E 247 GLY E 248 VAL E 255 GLN E 273 SITE 2 BC3 11 TYR E 274 LEU E 275 HOH E 632 HOH E 664 SITE 3 BC3 11 HOH E 672 HOH E 687 HOH E 849 SITE 1 BC4 19 TYR E 106 ASN E 112 ALA E 113 PHE E 114 SITE 2 BC4 19 TRP E 115 VAL E 139 HIS E 142 GLU E 143 SITE 3 BC4 19 HIS E 146 TYR E 157 GLU E 166 LEU E 202 SITE 4 BC4 19 ARG E 203 HIS E 231 ZN E 501 DMS E 508 SITE 5 BC4 19 GOL E 510 HOH E 673 HOH E 947 CRYST1 92.171 92.171 130.104 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010849 0.006264 0.000000 0.00000 SCALE2 0.000000 0.012528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007686 0.00000