HEADER LYASE 11-OCT-13 4N6F TITLE CRYSTAL STRUCTURE OF AMYCOLATOPSIS ORIENTALIS BEXX COMPLEXED WITH G6P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOSUGAR SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 797057; SOURCE 4 STRAIN: SUBSP. VINEARIA; SOURCE 5 GENE: BEXX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TIM BARREL, BEXX, THIOSUGAR SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,Y.ZHANG,C.KINSLAND,E.SASAKI,H.G.SUN,M.J.LU,T.LIU,A.OU,J.LI, AUTHOR 2 Y.CHEN,H.LIU,S.E.EALICK REVDAT 5 09-OCT-24 4N6F 1 REMARK LINK REVDAT 4 15-NOV-17 4N6F 1 REMARK REVDAT 3 09-JUL-14 4N6F 1 JRNL REVDAT 2 25-JUN-14 4N6F 1 JRNL REVDAT 1 14-MAY-14 4N6F 0 JRNL AUTH E.SASAKI,X.ZHANG,H.G.SUN,M.Y.LU,T.L.LIU,A.OU,J.Y.LI, JRNL AUTH 2 Y.H.CHEN,S.E.EALICK,H.W.LIU JRNL TITL CO-OPTING SULPHUR-CARRIER PROTEINS FROM PRIMARY METABOLIC JRNL TITL 2 PATHWAYS FOR 2-THIOSUGAR BIOSYNTHESIS. JRNL REF NATURE V. 509 427 2014 JRNL REFN ISSN 0028-0836 JRNL PMID 24814342 JRNL DOI 10.1038/NATURE13256 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1512 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2022 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3597 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3675 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3626 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4999 ; 1.192 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8318 ; 3.648 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 482 ; 5.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;33.827 ;23.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;14.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;21.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4142 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 750 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1934 ; 1.713 ; 3.691 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1933 ; 1.711 ; 3.689 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2414 ; 2.828 ; 5.527 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4N6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9767 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) PEG300, 0.1 M SODIUM REMARK 280 CACODYLATE/HCL, PH 6.5, 0.2 M CALCIUM ACETATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.18350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 84.47000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 84.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.77525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 84.47000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 84.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.59175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 84.47000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.47000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.77525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 84.47000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.47000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.59175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.18350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA B 301 LIES ON A SPECIAL POSITION. REMARK 375 CA CA B 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 410 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 412 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 PRO A 4 REMARK 465 HIS A 5 REMARK 465 ILE A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 253 REMARK 465 ALA A 254 REMARK 465 ALA A 255 REMARK 465 VAL A 256 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ILE B 3 REMARK 465 PRO B 4 REMARK 465 HIS B 5 REMARK 465 ILE B 6 REMARK 465 GLY B 7 REMARK 465 VAL B 8 REMARK 465 VAL B 9 REMARK 465 ALA B 10 REMARK 465 ASP B 11 REMARK 465 ALA B 254 REMARK 465 ALA B 255 REMARK 465 VAL B 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 145 101.85 -59.95 REMARK 500 ASN A 217 -73.24 -140.57 REMARK 500 THR B 84 54.05 -110.65 REMARK 500 ASP B 117 37.84 -97.73 REMARK 500 PRO B 145 93.40 -62.78 REMARK 500 ASN B 217 -71.76 -139.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD2 REMARK 620 2 ASP A 56 OD1 49.9 REMARK 620 3 ASP A 58 OD1 113.6 71.1 REMARK 620 4 HOH A 401 O 164.8 143.0 81.5 REMARK 620 5 HOH A 445 O 93.2 80.0 105.1 83.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD1 REMARK 620 2 ASP A 68 O 74.6 REMARK 620 3 ASP A 71 OD1 141.6 69.6 REMARK 620 4 GLU A 72 OE2 89.5 86.4 101.5 REMARK 620 5 HOH A 423 O 88.2 101.9 86.1 170.4 REMARK 620 6 HOH A 424 O 140.7 142.1 77.6 81.8 94.2 REMARK 620 7 HOH A 425 O 70.6 141.5 147.5 77.4 93.1 70.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 188 O REMARK 620 2 HOH A 437 O 98.8 REMARK 620 3 HOH A 447 O 82.0 178.9 REMARK 620 4 HOH A 448 O 175.5 77.0 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 32 O REMARK 620 2 ASP B 34 OD2 94.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 34 OD1 REMARK 620 2 ASP B 34 OD2 50.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 184 O REMARK 620 2 ILE B 187 O 89.8 REMARK 620 3 HOH B 421 O 89.4 170.1 REMARK 620 4 HOH B 422 O 165.6 90.4 88.0 REMARK 620 5 HOH B 423 O 97.2 86.0 103.9 97.2 REMARK 620 6 HOH B 424 O 85.9 75.5 94.6 80.2 161.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F6R A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F6R B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N6E RELATED DB: PDB DBREF 4N6F A 1 256 UNP D7RFL7 D7RFL7_AMYOR 1 256 DBREF 4N6F B 1 256 UNP D7RFL7 D7RFL7_AMYOR 1 256 SEQRES 1 A 256 MET THR ILE PRO HIS ILE GLY VAL VAL ALA ASP GLU PRO SEQRES 2 A 256 TRP LEU LYS ILE GLY ALA ARG GLU PHE ARG SER ARG ILE SEQRES 3 A 256 LEU VAL GLY ILE GLU GLN TYR ASP SER VAL PRO LEU VAL SEQRES 4 A 256 ARG ASP VAL LEU ASN ALA ALA GLY ALA ASP VAL PHE ILE SEQRES 5 A 256 THR THR VAL ASP PRO ASP ASN ARG ARG SER SER LEU LEU SEQRES 6 A 256 LEU MET ASP LEU ALA ASP GLU LEU PRO LEU ASP ASP PHE SEQRES 7 A 256 THR TRP ILE GLY THR THR SER PHE ALA ARG THR LYS GLU SEQRES 8 A 256 SER ALA LEU ARG SER ALA ARG ILE LEU ARG ASP SER LEU SEQRES 9 A 256 GLY ILE GLU ILE LEU LYS LEU ASP VAL ARG GLY ASP ASP SEQRES 10 A 256 ASN THR PRO ASP ASN ALA GLY THR VAL GLU ALA ALA ARG SEQRES 11 A 256 GLU LEU ARG ALA GLU GLY MET GLU LEU LEU PRO PHE ILE SEQRES 12 A 256 LEU PRO ASP LEU ALA THR ALA ARG ALA LEU GLU GLU ALA SEQRES 13 A 256 GLY CYS ALA ALA LEU ARG VAL MET ALA SER PRO VAL ALA SEQRES 14 A 256 SER GLY ARG GLY ILE ALA ASN PRO ALA ALA ILE ARG GLU SEQRES 15 A 256 LEU ILE GLU GLN ILE GLY ILE PRO VAL VAL VAL GLU GLY SEQRES 16 A 256 GLY ILE GLY SER ALA ARG HIS VAL ALA GLU ALA MET GLU SEQRES 17 A 256 LEU GLY ALA SER ALA THR LEU VAL ASN THR ALA LEU VAL SEQRES 18 A 256 ARG ALA GLU SER PRO LEU LEU MET ALA ALA ALA MET ARG SEQRES 19 A 256 GLN ALA ALA LEU ALA GLY LEU LEU SER TYR GLU SER GLY SEQRES 20 A 256 PRO MET PRO GLU VAL ALA ALA ALA VAL SEQRES 1 B 256 MET THR ILE PRO HIS ILE GLY VAL VAL ALA ASP GLU PRO SEQRES 2 B 256 TRP LEU LYS ILE GLY ALA ARG GLU PHE ARG SER ARG ILE SEQRES 3 B 256 LEU VAL GLY ILE GLU GLN TYR ASP SER VAL PRO LEU VAL SEQRES 4 B 256 ARG ASP VAL LEU ASN ALA ALA GLY ALA ASP VAL PHE ILE SEQRES 5 B 256 THR THR VAL ASP PRO ASP ASN ARG ARG SER SER LEU LEU SEQRES 6 B 256 LEU MET ASP LEU ALA ASP GLU LEU PRO LEU ASP ASP PHE SEQRES 7 B 256 THR TRP ILE GLY THR THR SER PHE ALA ARG THR LYS GLU SEQRES 8 B 256 SER ALA LEU ARG SER ALA ARG ILE LEU ARG ASP SER LEU SEQRES 9 B 256 GLY ILE GLU ILE LEU LYS LEU ASP VAL ARG GLY ASP ASP SEQRES 10 B 256 ASN THR PRO ASP ASN ALA GLY THR VAL GLU ALA ALA ARG SEQRES 11 B 256 GLU LEU ARG ALA GLU GLY MET GLU LEU LEU PRO PHE ILE SEQRES 12 B 256 LEU PRO ASP LEU ALA THR ALA ARG ALA LEU GLU GLU ALA SEQRES 13 B 256 GLY CYS ALA ALA LEU ARG VAL MET ALA SER PRO VAL ALA SEQRES 14 B 256 SER GLY ARG GLY ILE ALA ASN PRO ALA ALA ILE ARG GLU SEQRES 15 B 256 LEU ILE GLU GLN ILE GLY ILE PRO VAL VAL VAL GLU GLY SEQRES 16 B 256 GLY ILE GLY SER ALA ARG HIS VAL ALA GLU ALA MET GLU SEQRES 17 B 256 LEU GLY ALA SER ALA THR LEU VAL ASN THR ALA LEU VAL SEQRES 18 B 256 ARG ALA GLU SER PRO LEU LEU MET ALA ALA ALA MET ARG SEQRES 19 B 256 GLN ALA ALA LEU ALA GLY LEU LEU SER TYR GLU SER GLY SEQRES 20 B 256 PRO MET PRO GLU VAL ALA ALA ALA VAL HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET F6R A 304 15 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HET F6R B 304 15 HETNAM CA CALCIUM ION HETNAM F6R FRUCTOSE -6-PHOSPHATE FORMUL 3 CA 6(CA 2+) FORMUL 6 F6R 2(C6 H13 O9 P) FORMUL 11 HOH *107(H2 O) HELIX 1 1 SER A 35 GLY A 47 1 13 HELIX 2 2 ASN A 59 ASP A 71 1 13 HELIX 3 3 PRO A 74 PHE A 78 5 5 HELIX 4 4 THR A 89 GLY A 105 1 17 HELIX 5 5 ASP A 121 GLU A 135 1 15 HELIX 6 6 ASP A 146 GLY A 157 1 12 HELIX 7 7 ASN A 176 ILE A 187 1 12 HELIX 8 8 SER A 199 LEU A 209 1 11 HELIX 9 9 ASN A 217 ARG A 222 1 6 HELIX 10 10 SER A 225 SER A 246 1 22 HELIX 11 11 SER B 35 GLY B 47 1 13 HELIX 12 12 LEU B 65 ALA B 70 5 6 HELIX 13 13 PRO B 74 PHE B 78 5 5 HELIX 14 14 THR B 89 GLY B 105 1 17 HELIX 15 15 ASP B 121 GLU B 135 1 15 HELIX 16 16 ASP B 146 ALA B 156 1 11 HELIX 17 17 ASN B 176 ILE B 187 1 12 HELIX 18 18 SER B 199 LEU B 209 1 11 HELIX 19 19 ASN B 217 ALA B 223 1 7 HELIX 20 20 SER B 225 SER B 246 1 22 HELIX 21 21 MET B 249 ALA B 253 5 5 SHEET 1 A 2 LEU A 15 ILE A 17 0 SHEET 2 A 2 ARG A 20 PHE A 22 -1 O PHE A 22 N LEU A 15 SHEET 1 B 8 ILE A 26 VAL A 28 0 SHEET 2 B 8 ALA A 213 VAL A 216 1 O THR A 214 N LEU A 27 SHEET 3 B 8 VAL A 191 GLU A 194 1 N VAL A 193 O ALA A 213 SHEET 4 B 8 LEU A 161 MET A 164 1 N LEU A 161 O VAL A 192 SHEET 5 B 8 GLU A 138 ILE A 143 1 N PRO A 141 O ARG A 162 SHEET 6 B 8 ILE A 108 LEU A 111 1 N LEU A 109 O GLU A 138 SHEET 7 B 8 THR A 79 THR A 83 1 N GLY A 82 O LYS A 110 SHEET 8 B 8 VAL A 50 ILE A 52 1 N PHE A 51 O THR A 79 SHEET 1 C 2 LEU B 15 ILE B 17 0 SHEET 2 C 2 ARG B 20 PHE B 22 -1 O PHE B 22 N LEU B 15 SHEET 1 D 8 ILE B 26 VAL B 28 0 SHEET 2 D 8 ALA B 213 VAL B 216 1 O VAL B 216 N LEU B 27 SHEET 3 D 8 VAL B 191 GLU B 194 1 N VAL B 193 O ALA B 213 SHEET 4 D 8 LEU B 161 MET B 164 1 N LEU B 161 O VAL B 192 SHEET 5 D 8 GLU B 138 ILE B 143 1 N PRO B 141 O ARG B 162 SHEET 6 D 8 ILE B 108 LEU B 111 1 N LEU B 109 O GLU B 138 SHEET 7 D 8 THR B 79 THR B 83 1 N GLY B 82 O LYS B 110 SHEET 8 D 8 VAL B 50 THR B 54 1 N PHE B 51 O ILE B 81 LINK NZ LYS A 110 C1 F6R A 304 1555 1555 1.49 LINK NZ LYS B 110 C1 F6R B 304 1555 1555 1.48 LINK OD2 ASP A 56 CA CA A 301 1555 1555 2.58 LINK OD1 ASP A 56 CA CA A 301 1555 1555 2.61 LINK OD1 ASP A 58 CA CA A 301 1555 1555 2.33 LINK OD1 ASP A 68 CA CA A 302 1555 1555 2.33 LINK O ASP A 68 CA CA A 302 1555 1555 2.54 LINK OD1 ASP A 71 CA CA A 302 1555 1555 2.52 LINK OE2 GLU A 72 CA CA A 302 1555 1555 2.32 LINK O GLY A 188 CA CA A 303 1555 1555 2.69 LINK CA CA A 301 O HOH A 401 1555 1555 2.48 LINK CA CA A 301 O HOH A 445 1555 1555 2.41 LINK CA CA A 302 O HOH A 423 1555 1555 2.34 LINK CA CA A 302 O HOH A 424 1555 1555 2.82 LINK CA CA A 302 O HOH A 425 1555 1555 2.67 LINK CA CA A 303 O HOH A 437 1555 1555 2.57 LINK CA CA A 303 O HOH A 447 1555 1555 2.93 LINK CA CA A 303 O HOH A 448 1555 1555 2.25 LINK O GLN B 32 CA CA B 301 1555 1555 2.17 LINK OD2 ASP B 34 CA CA B 301 1555 1555 2.54 LINK OD1 ASP B 34 CA CA B 303 1555 1555 2.11 LINK OD2 ASP B 34 CA CA B 303 1555 1555 2.79 LINK O ILE B 184 CA CA B 302 1555 1555 2.24 LINK O ILE B 187 CA CA B 302 1555 1555 2.45 LINK CA CA B 302 O HOH B 421 1555 1555 2.38 LINK CA CA B 302 O HOH B 422 1555 1555 2.30 LINK CA CA B 302 O HOH B 423 1555 1555 2.48 LINK CA CA B 302 O HOH B 424 1555 1555 2.51 SITE 1 AC1 6 ASP A 56 ASP A 58 HOH A 401 HOH A 445 SITE 2 AC1 6 GLY B 136 GLU B 138 SITE 1 AC2 6 ASP A 68 ASP A 71 GLU A 72 HOH A 423 SITE 2 AC2 6 HOH A 424 HOH A 425 SITE 1 AC3 5 LYS A 16 GLY A 188 HOH A 437 HOH A 447 SITE 2 AC3 5 HOH A 448 SITE 1 AC4 16 GLU A 31 LYS A 110 ASP A 112 ARG A 114 SITE 2 AC4 16 ARG A 162 VAL A 168 ALA A 169 GLU A 194 SITE 3 AC4 16 GLY A 195 GLY A 196 ASN A 217 THR A 218 SITE 4 AC4 16 HOH A 402 HOH A 403 HOH A 404 HOH A 455 SITE 1 AC5 2 GLN B 32 ASP B 34 SITE 1 AC6 6 ILE B 184 ILE B 187 HOH B 421 HOH B 422 SITE 2 AC6 6 HOH B 423 HOH B 424 SITE 1 AC7 1 ASP B 34 SITE 1 AC8 14 GLU B 31 SER B 85 LYS B 110 ASP B 112 SITE 2 AC8 14 ARG B 114 ALA B 169 GLU B 194 GLY B 195 SITE 3 AC8 14 GLY B 196 ASN B 217 THR B 218 HOH B 401 SITE 4 AC8 14 HOH B 402 HOH B 403 CRYST1 168.940 168.940 42.367 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023603 0.00000