HEADER DNA BINDING PROTEIN 14-OCT-13 4N6Q TITLE CRYSTAL STRUCTURE OF VOSA VELVET DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOSA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VELVET DOMAIN (UNP RESIDUES 1-190); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS; SOURCE 3 ORGANISM_TAXID: 162425; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM13 KEYWDS IG-FOLD, NFKB, BETA-SANDWICH, TRANSCRIPTION FACTOR, VELB, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.L.AHMED,A.DICKMANNS,P.NEUMANN,R.FICNER REVDAT 2 28-FEB-24 4N6Q 1 REMARK SEQADV REVDAT 1 22-JAN-14 4N6Q 0 JRNL AUTH Y.L.AHMED,J.GERKE,H.S.PARK,O.BAYRAM,P.NEUMANN,M.NI, JRNL AUTH 2 A.DICKMANNS,S.C.KIM,J.H.YU,G.H.BRAUS,R.FICNER JRNL TITL THE VELVET FAMILY OF FUNGAL REGULATORS CONTAINS A JRNL TITL 2 DNA-BINDING DOMAIN STRUCTURALLY SIMILAR TO NF-KAPPA B. JRNL REF PLOS BIOL. V. 11 01750 2013 JRNL REFN ISSN 1544-9173 JRNL PMID 24391470 JRNL DOI 10.1371/JOURNAL.PBIO.1001750 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 19471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1078 - 3.4220 1.00 2911 152 0.1822 0.1925 REMARK 3 2 3.4220 - 2.7166 1.00 2703 142 0.1796 0.2158 REMARK 3 3 2.7166 - 2.3733 1.00 2657 140 0.1846 0.2497 REMARK 3 4 2.3733 - 2.1564 0.99 2611 139 0.1780 0.2216 REMARK 3 5 2.1564 - 2.0019 0.99 2605 138 0.1658 0.2258 REMARK 3 6 2.0019 - 1.8839 0.98 2560 136 0.1774 0.2261 REMARK 3 7 1.8839 - 1.7900 0.94 2448 129 0.2609 0.3418 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 25.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20090 REMARK 3 B22 (A**2) : -0.20090 REMARK 3 B33 (A**2) : 0.40180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1453 REMARK 3 ANGLE : 1.567 1965 REMARK 3 CHIRALITY : 0.109 213 REMARK 3 PLANARITY : 0.009 260 REMARK 3 DIHEDRAL : 13.842 552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 8:26) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6731 12.7597 -8.4887 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.2001 REMARK 3 T33: 0.1861 T12: 0.0549 REMARK 3 T13: -0.0268 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 0.2678 L22: 0.0969 REMARK 3 L33: 0.3994 L12: 0.2336 REMARK 3 L13: 0.1171 L23: 0.2667 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0285 S13: 0.1272 REMARK 3 S21: -0.0470 S22: -0.0446 S23: 0.0787 REMARK 3 S31: -0.2113 S32: -0.1143 S33: 0.0019 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 27:37) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4180 -2.8530 18.3397 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.3850 REMARK 3 T33: 0.1101 T12: -0.0312 REMARK 3 T13: -0.0367 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.3622 L22: 0.5691 REMARK 3 L33: 0.0987 L12: -0.4039 REMARK 3 L13: 0.1154 L23: -0.0893 REMARK 3 S TENSOR REMARK 3 S11: 0.2850 S12: -0.2886 S13: -0.3350 REMARK 3 S21: 0.1781 S22: 0.0602 S23: 0.2127 REMARK 3 S31: 0.0834 S32: 0.0495 S33: 0.0451 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 38:47) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9307 -6.2728 14.9881 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.3486 REMARK 3 T33: 0.2531 T12: 0.0479 REMARK 3 T13: -0.0589 T23: 0.1430 REMARK 3 L TENSOR REMARK 3 L11: 0.0456 L22: 0.2375 REMARK 3 L33: 0.1406 L12: 0.1013 REMARK 3 L13: -0.0623 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: -0.3353 S13: -0.8410 REMARK 3 S21: 0.0606 S22: 0.0613 S23: -0.0904 REMARK 3 S31: 0.2660 S32: 0.2630 S33: 0.0070 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 48:70) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7085 7.5640 -10.7335 REMARK 3 T TENSOR REMARK 3 T11: 0.0924 T22: 0.2421 REMARK 3 T33: 0.1841 T12: 0.0074 REMARK 3 T13: -0.0281 T23: 0.0727 REMARK 3 L TENSOR REMARK 3 L11: 0.2520 L22: 0.4513 REMARK 3 L33: 0.1929 L12: 0.2974 REMARK 3 L13: 0.0601 L23: -0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: 0.1189 S13: 0.3063 REMARK 3 S21: -0.0995 S22: 0.2404 S23: 0.1567 REMARK 3 S31: 0.1072 S32: -0.2080 S33: 0.0585 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 71:89) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5988 12.2891 11.8579 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.2137 REMARK 3 T33: 0.1626 T12: 0.0339 REMARK 3 T13: -0.0006 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.3669 L22: 0.0364 REMARK 3 L33: 0.2621 L12: 0.0938 REMARK 3 L13: -0.0389 L23: -0.2003 REMARK 3 S TENSOR REMARK 3 S11: -0.0649 S12: -0.1009 S13: 0.1915 REMARK 3 S21: 0.0860 S22: 0.0312 S23: 0.0024 REMARK 3 S31: -0.1344 S32: 0.0001 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 90:111) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6109 0.4434 1.4836 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.1944 REMARK 3 T33: 0.1105 T12: 0.0096 REMARK 3 T13: -0.0124 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.3414 L22: 0.2772 REMARK 3 L33: 0.2831 L12: 0.1100 REMARK 3 L13: -0.3323 L23: -0.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: 0.0423 S13: -0.0288 REMARK 3 S21: 0.0155 S22: -0.0223 S23: -0.0051 REMARK 3 S31: 0.0552 S32: 0.0865 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 112:150) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9139 8.2532 4.1806 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.1423 REMARK 3 T33: 0.1041 T12: 0.0162 REMARK 3 T13: 0.0031 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.3767 L22: 0.2952 REMARK 3 L33: 0.3322 L12: 0.1858 REMARK 3 L13: 0.1809 L23: 0.1381 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0193 S13: 0.0239 REMARK 3 S21: -0.0341 S22: -0.0372 S23: -0.0591 REMARK 3 S31: -0.0221 S32: -0.0131 S33: -0.0010 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 151:166) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6845 -1.7718 20.8194 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.2476 REMARK 3 T33: 0.1739 T12: -0.0504 REMARK 3 T13: -0.0656 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 0.1652 L22: 0.1003 REMARK 3 L33: 0.2192 L12: 0.1658 REMARK 3 L13: 0.0226 L23: -0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.3356 S12: -0.1692 S13: -0.2872 REMARK 3 S21: -0.0299 S22: -0.0062 S23: 0.0005 REMARK 3 S31: 0.2567 S32: -0.2441 S33: 0.0061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 167:176) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4624 -10.2471 3.5236 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1870 REMARK 3 T33: 0.1593 T12: -0.0223 REMARK 3 T13: -0.0225 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.0237 L22: 0.0986 REMARK 3 L33: 0.0357 L12: -0.0349 REMARK 3 L13: 0.0017 L23: 0.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.1404 S12: 0.0002 S13: -0.2072 REMARK 3 S21: 0.1153 S22: -0.1886 S23: -0.2418 REMARK 3 S31: 0.4376 S32: -0.2458 S33: 0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 177:185) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6076 -11.1162 3.6121 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.4052 REMARK 3 T33: 0.2329 T12: 0.1185 REMARK 3 T13: 0.0194 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.0137 L22: 0.0855 REMARK 3 L33: 0.0426 L12: -0.0124 REMARK 3 L13: 0.0304 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.1493 S12: -0.0446 S13: -0.1733 REMARK 3 S21: -0.1182 S22: -0.0494 S23: -0.3280 REMARK 3 S31: 0.3578 S32: 0.6471 S33: 0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4N6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000082821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19471 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 32.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.010 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 22.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.5, 32% PEG 2000 MME, REMARK 280 150 MM KI, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.71500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.35750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.07250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.71500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 142.07250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.35750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 45.40000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N NO3 A 305 LIES ON A SPECIAL POSITION. REMARK 375 O2 NO3 A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 TYR A 6 REMARK 465 PRO A 7 REMARK 465 LYS A 186 REMARK 465 GLU A 187 REMARK 465 PRO A 188 REMARK 465 ARG A 189 REMARK 465 THR A 190 REMARK 465 SER A 191 REMARK 465 ALA A 192 REMARK 465 TRP A 193 REMARK 465 SER A 194 REMARK 465 HIS A 195 REMARK 465 PRO A 196 REMARK 465 GLN A 197 REMARK 465 PHE A 198 REMARK 465 GLU A 199 REMARK 465 LYS A 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 160 O MET A 165 8555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 140 -120.69 51.56 REMARK 500 LYS A 181 95.21 -69.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4N6R RELATED DB: PDB DBREF 4N6Q A 1 190 UNP A0SP16 A0SP16_EMEND 1 190 SEQADV 4N6Q SER A 191 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q ALA A 192 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q TRP A 193 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q SER A 194 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q HIS A 195 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q PRO A 196 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q GLN A 197 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q PHE A 198 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q GLU A 199 UNP A0SP16 EXPRESSION TAG SEQADV 4N6Q LYS A 200 UNP A0SP16 EXPRESSION TAG SEQRES 1 A 200 MET SER ALA ALA ASN TYR PRO ASP PRO SER LEU PRO ARG SEQRES 2 A 200 PRO SER THR SER ASP ASP PHE GLU LEU ILE VAL ARG GLN SEQRES 3 A 200 ASN PRO ASN ARG ALA ARG VAL ALA GLY GLY LYS GLU LYS SEQRES 4 A 200 GLU ARG LYS PRO VAL ASP PRO PRO PRO ILE VAL GLN ILE SEQRES 5 A 200 ARG VAL ARG GLU GLU GLY THR TYR LEU ALA GLN HIS TYR SEQRES 6 A 200 LEU GLN SER PRO TYR PHE PHE MET SER CYS SER LEU TYR SEQRES 7 A 200 ASP ALA GLN GLU ASP ALA PRO ALA SER ILE PRO PRO SER SEQRES 8 A 200 THR ALA LEU THR GLY THR LEU VAL SER SER LEU HIS ARG SEQRES 9 A 200 LEU LYS ASP VAL ASP ASN THR ASP GLY GLY PHE PHE VAL SEQRES 10 A 200 TRP GLY ASP LEU SER ILE LYS VAL GLU GLY ASP PHE ARG SEQRES 11 A 200 LEU LYS PHE SER LEU PHE GLU MET ARG LYS THR ASP VAL SEQRES 12 A 200 VAL PHE LEU LYS SER ILE VAL SER GLU ARG PHE THR VAL SEQRES 13 A 200 SER PRO PRO LYS SER PHE PRO GLY MET ALA GLU SER THR SEQRES 14 A 200 PHE LEU SER ARG SER PHE ALA ASP GLN GLY VAL LYS LEU SEQRES 15 A 200 ARG ILE ARG LYS GLU PRO ARG THR SER ALA TRP SER HIS SEQRES 16 A 200 PRO GLN PHE GLU LYS HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET NO3 A 304 4 HET NO3 A 305 4 HETNAM IOD IODIDE ION HETNAM NO3 NITRATE ION FORMUL 2 IOD 3(I 1-) FORMUL 5 NO3 2(N O3 1-) FORMUL 7 HOH *192(H2 O) HELIX 1 1 THR A 16 ASP A 18 5 3 HELIX 2 2 LYS A 37 ARG A 41 5 5 HELIX 3 3 THR A 59 TYR A 65 1 7 HELIX 4 4 LEU A 66 SER A 68 5 3 HELIX 5 5 PRO A 89 ALA A 93 1 5 HELIX 6 6 THR A 169 GLN A 178 1 10 SHEET 1 A 4 PHE A 20 GLN A 26 0 SHEET 2 A 4 ILE A 49 VAL A 54 -1 O GLN A 51 N ILE A 23 SHEET 3 A 4 ASP A 112 VAL A 117 -1 O PHE A 116 N VAL A 50 SHEET 4 A 4 HIS A 103 LYS A 106 -1 N LEU A 105 O GLY A 113 SHEET 1 B 5 ALA A 31 ARG A 32 0 SHEET 2 B 5 PHE A 154 SER A 157 1 O SER A 157 N ALA A 31 SHEET 3 B 5 GLY A 127 ARG A 139 -1 N GLY A 127 O VAL A 156 SHEET 4 B 5 PHE A 71 ASP A 79 -1 N SER A 76 O LYS A 132 SHEET 5 B 5 VAL A 99 SER A 101 -1 O SER A 100 N MET A 73 SHEET 1 C 4 ALA A 31 ARG A 32 0 SHEET 2 C 4 PHE A 154 SER A 157 1 O SER A 157 N ALA A 31 SHEET 3 C 4 GLY A 127 ARG A 139 -1 N GLY A 127 O VAL A 156 SHEET 4 C 4 ASP A 142 VAL A 150 -1 O LYS A 147 N LEU A 135 SHEET 1 D 2 LEU A 94 GLY A 96 0 SHEET 2 D 2 LEU A 121 ILE A 123 -1 O SER A 122 N THR A 95 CISPEP 1 ASP A 45 PRO A 46 0 -9.67 SITE 1 AC1 1 IOD A 302 SITE 1 AC2 2 IOD A 301 HOH A 448 SITE 1 AC3 2 ASP A 79 SER A 87 SITE 1 AC4 7 ASN A 29 ARG A 30 ASP A 45 PRO A 46 SITE 2 AC4 7 LYS A 160 ALA A 166 HOH A 555 SITE 1 AC5 1 GLY A 164 CRYST1 45.400 45.400 189.430 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022026 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005279 0.00000